EWM26517.1, cds4155 (CDS) Nannochloropsis gaditana

Overview
NameEWM26517.1
Unique Namecds4155
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1023251..1023421 +
Alignment locationCM002462.1:1023560..1023703 +
Alignment locationCM002462.1:1023849..1024457 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26517.1
ProductCell division protein borealin
Orig transcript idgnl|cribi|Naga_100398g4.1306.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1023251..1023421 +
CM002462.1supercontigCM002462.1:1023560..1023703 +
CM002462.1supercontigCM002462.1:1023849..1024457 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR018867Cell_div_borealin
IPR018851Borealin-like_N
Homology
BLAST of EWM26517.1 vs. NCBI_GenBank
Match: gi|585108592|gb|EWM26517.1| (Cell division protein borealin [Nannochloropsis gaditana])

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0
Query:    1 MGSGRAVTGKKRGGGGGSVLEAATLAEGKVGAEGVLNSLSNIKPEELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMAAQTPRMTMRFDPRLPMTPGIRAPRYGESVLSVNGSPLQVPLPVHPGTSSGRVETEWV 307
            MGSGRAVTGKKRGGGGGSVLEAATLAEGKVGAEGVLNSLSNIKPEELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMAAQTPRMTMRFDPRLPMTPGIRAPRYGESVLSVNGSPLQVPLPVHPGTSSGRVETEWV
Sbjct:    1 MGSGRAVTGKKRGGGGGSVLEAATLAEGKVGAEGVLNSLSNIKPEELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMAAQTPRMTMRFDPRLPMTPGIRAPRYGESVLSVNGSPLQVPLPVHPGTSSGRVETEWV 307          
BLAST of EWM26517.1 vs. NCBI_GenBank
Match: gi|1191049632|ref|XP_020902574.1| (borealin-like [Exaiptasia pallida])

HSP 1 Score: 75.0998 bits (183), Expect = 8.124e-12
Identity = 70/264 (26.52%), Postives = 126/264 (47.73%), Query Frame = 0
Query:   45 EELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHK-PARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPM---EGGSRNTRSG--------RVRGMAAQTPRMTMRFDPRLPMTPG-IRAPRYGESVLSVNGSPL-QVPLPVH 294
            ++L+  + + + ++ +R ++++++A+    S++ A+H+E+MK+P ++R M L +F    G+   TV+     E AS+++S                  V   V++ AP N    +R+    +      ++ A ++   K P    V+       T G SL   A + + +    S  S   L  T M  P        +N RS         +VR + AQTP +T +FDP LP+TP  +R P+ GE ++S++GSPL  +  P H
Sbjct:   33 QKLDDYLQDFDVQVKSRIEQMKLQAKSIISSIKGAYHLELMKMPPNIRKMKLCDFYALGGKVDATVL-----EGASKSVSA-----------------VANAVLQNAPTN----NRVPFEDKTNAPMSKTPAQSTRKKKAPKTEVVEP-----QTTGRSLRSTARKRKNVPESPSCKSKAKLQKTEMLAPTTSRRSTRKNARSNIQFVTPACQVRNI-AQTPFVTPKFDPSLPVTPALLREPKEGERIMSMSGSPLANIATPAH 264          
BLAST of EWM26517.1 vs. NCBI_GenBank
Match: gi|291230260|ref|XP_002735089.1| (PREDICTED: borealin-like [Saccoglossus kowalevskii])

HSP 1 Score: 70.0922 bits (170), Expect = 4.868e-10
Identity = 73/254 (28.74%), Postives = 113/254 (44.49%), Query Frame = 0
Query:   45 EELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFSDQYGEDIRTVMRLAVEEEASRALSQ-----SHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIE--SGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMAAQTPRMTMRFDPRLPMTPGI-RAPRYGESVLSVNGSPLQVP 290
            ++LE  + + + E+N R   +R EAE+    + +++ +E+ KLPK++R +   +F  + G  +  V+   V E   R  S      S  K   R  L    G V  T +         + + E  S +EV   E + T G  +    AR  +         R  + C DA     + VR S    G L   L+   M  G  N  +     M   TP +T +FDPRLP+TP + R P+ GE ++S+ GSPL  P
Sbjct:   33 QKLELFLQDFDIEVNDRIAAMRKEAEKMCSLINSSYKMELFKLPKAMRNLKRTQFIAKGGS-VNAVVLDEVTEGIDRLASTLAPILSCSKSTARVPL----GNVGNTKINECTNLDPVTIKEEVLSSEEVQPTETKKTRGKGTRTTKARAAL---------REQNNCSDA----PLTVRRSTR-KGALKNQLVTPAMNTGRHNALT-----MGWDTPAVTPKFDPRLPVTPAVMREPKAGERIMSMCGSPLTNP 262          
BLAST of EWM26517.1 vs. NCBI_GenBank
Match: gi|551520687|ref|XP_005811834.1| (PREDICTED: borealin [Xiphophorus maculatus])

HSP 1 Score: 67.781 bits (164), Expect = 2.127e-9
Identity = 67/253 (26.48%), Postives = 116/253 (45.85%), Query Frame = 0
Query:   40 SNIKPEELEHIMVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREF--SDQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKAAPRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRGSSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMAAQTPRMTMRFDPRLPMTPGIRAPRYGESV--LSVNGSPLQ 288
            +++K  +LE  + + + E+ TR  R+R + +     + N +++ ++KLP++VR     +   S+ +  +   V  +  +EEA  A+ +S   +                ++K+A +   +  R +SG         ST    ++ KP        P   TT+ S + G +   EG  +R S            + P+   +RN     +  M   TP +T RFDPRLP TP +R PR+ E V  +SVNGSP+Q
Sbjct:   13 NSLKTAKLEAFLQDFDHEVKTRVDRMREKIDHLLKDVDNNYNMALIKLPRAVRQQVWLQLCSSESHKSNTAEVDNVKRQEEA--AILESMVVEDH------------AVLLKSAKKTTRKKGRAKSG--CDENVLNSTRKTRTARKP--------PS--TTKRSKVLGVSK--EGSTIRRS-----------NRKPLVTPARNLLDSSL--MMGSTPLITPRFDPRLPKTPAVRVPRHKERVFSMSVNGSPIQ 224          
The following BLAST results are available for this feature:
BLAST of EWM26517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108592|gb|EWM26517.1|0.000e+0100.00Cell division protein borealin [Nannochloropsis ga... [more]
gi|1191049632|ref|XP_020902574.1|8.124e-1226.52borealin-like [Exaiptasia pallida][more]
gi|291230260|ref|XP_002735089.1|4.868e-1028.74PREDICTED: borealin-like [Saccoglossus kowalevskii... [more]
gi|551520687|ref|XP_005811834.1|2.127e-926.48PREDICTED: borealin [Xiphophorus maculatus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4165rna4165Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications