rna4164, rna4164 (mRNA) Nannochloropsis gaditana

Overview
Namerna4164
Unique Namerna4164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1382
Alignment locationCM002462.1:1019757..1021324 -

Link to JBrowse

Properties
Property NameValue
Product3-demethylubiquinone-9 3-methyltransferase
Orig transcript idgnl|cribi|Naga_100398g3.1308.mrna
Orig protein idgnl|cribi|Naga_100398g3.1308
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1019757..1021324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100398g3gene4007Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4164rna4164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26519.1cds4154Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4164 ID=rna4164|Name=rna4164|organism=Nannochloropsis gaditana|type=mRNA|length=1382bp
GTCCCTCCACCGAAGGACAAGGCCACCGAGGCAAGCGCCAGCTCGTCGAG
CGTCCCTCTCCTGGGAGGAAAAATGGCCCCAGACGATTTCTCTGTCAAAG
TCCTGACGACCGGGTATTGGCCGTCCTACACGCAGTTGGATGTCCGGCTG
CCCGACGAAATGCTTCGCTGCACCCAGGCCTTCAAAGCCTGGTACGACCT
CAAGAATTCGCGGCGACGCCTCGCATGGCAGCACTCCTTGGGATCTGCAA
CCCTCCGGGCGAAATATGGCGCGAAAACATACGATTTGCAAACAAACACA
CTGCAGGCGGTTCTCCTCCTCTCCTTCCAGTCGGACGAGGAGAGCCTCGG
TCTTTCCACCCTTAAAGAACGATTGAACGTCCCGACCGAGCAGATGAAGC
CCCTCCTCCACTCCCTCTCCTGCGGAAGATACAAGATCTTGAAGAAGCAG
CCCGCCTCGGACAAGATCAAGGAGACAGACACCTTCACGATCAACCCTTC
CTTCTCCTGCCCCCAGCGCGTGATCCGTATTCCGATGGCCACCATTGAGG
AGAGCCACAACCCGAACAGAATCGAGGAGGATCGTTCGATCGCGATTGAG
GCGGCGATTGTACGCATTATGAAGGCGCGCAAGGTTCTGACACATCAACA
GCTCACATCCGAAGTGCTCTCTCAACTCGCTTTCTTTCGGCCAAATCCTA
AAGTGGTTAAACAACGCATCCACGCTTTGATTGACAGGGAATACTTGGAA
CGAGACGAGAACCCTAACCAGTACAAGTATCTGGCCTAGGCGTGAAAGCT
GATGTGAGGTGTGACGGTTGAGAAGATAGCGTGAAGAGGGTGGAGGAGAT
TGAGGGATTGAGATGAGATACCTTAGTCTGAAGAGCGATGGGTTGCGTGA
AATCTGTGACATACGAAAAGCAGGGCGGGGGGCGGGGGGCGAAATATGGA
GAGTGTGAGGCGCATCAGGCTGCATTTTCGAAAGACTAATCGATATAAAG
CAGAAGACTCTGCCCCTTTACGGTTGCATCCCTTTCTTTCCAGTCACACT
GGCGTTTCGGTACCATTCACCGTGATTCGATATCAGTTTCACTCCATAGC
ATGCGCGTATCCTCCCGTCACATCAGGCTGGCTACTGACTTCTCCTTCAT
GCTGAACGCACACCGGGTTGAATCGCATGTTTCCAGGCGTGAGGGCAGGT
AGTGGCATGAATTGTGGATGACATCGCGTGGCACTGACTACTAGAGCGTA
CCACGCCCCCAAAAAACGGGGGCTCCTCCCCTTCTTCCAGGGCCAGACTC
ACTCATCAGTCCTACCACATGGCGCGTGCTTTTGACGGGGCCGTGGAGAA
ATTTCTGTGAGAGCCCACAGATTGCAGCCTAA
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protein sequence of rna4164

>rna4164-protein ID=rna4164-protein|Name=rna4164|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MLVETEEHSKSRGDGKGGRVVLTTINRTVKAYLLAVLGAEYIARIIPRGT
HQWKKFLQPQEIARMGADAGLRVEDVTGLIYNPITNTWRLDKNDIDVNFA
MCLKGERGQGQRGKA
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mRNA from alignment at CM002462.1:1019757..1021324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4164 ID=rna4164|Name=rna4164|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp|location=Sequence derived from alignment at CM002462.1:1019757..1021324- (Nannochloropsis gaditana)
GGCACGGGCCAGCGTTTCGACGCGGTGGTGTCGTCGGAAGTGATTGAGCA
CGTGGCCGCACCCGCTTCCTTTGTCAAATCCTTGGCAGGCATGCTGGTGG
AGACAGAAGAGGTGAGGGAAGGAGGGAAAGAGGGAAAAAGGGAGGGAGGA
AGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGATAGTATGGACTTTGTGA
CAATGACGGAAATCGAGCTAAGCGAAGCTTTCGATGACGGAGCCCGGGTA
CAAAAGGCACGAGGGTAGACGAGGAAGGACCTGATCAGTATGGCAATTCC
AATGAGGAGCGAGGCAACATATCAGCTTGCTGACATGTTATCTGCCCTCC
CCTCTCCCTCCTTCGGTGCACATGCCCTGCTTACCCTTATCCGTCTGACC
TTGGTATCCTACCCTTATCCGCCTGACCCTGGACTCCTCCCTGCCCCTCC
TTTCCAGCATTCTAAGAGCAGGGGAGATGGAAAGGGCGGGCGCGTGGTCC
TCACGACCATCAACCGCACCGTCAAGGCCTACCTGCTTGCCGTTCTGGGC
GCGGAGTACATCGCTCGCATCATTCCCCGAGGCGAGTAGTGTTGCCCTCG
TCCCTTTTTCGTCCACCCCTTTCCTATGATCCTTGACAGTGGCATGTCTG
CGATGCTTTCTCCTCTCAAAGGAGCGTATCTCTGCATGTATCCCATGATT
TCCCCCACGTGTGTCTGGTCTCACGCTGCGTTGGCCTCCCCCCCTGTGAC
AGGCACGCACCAATGGAAGAAATTCCTTCAGCCTCAAGAAATTGCGCGAA
TGGGTGCCGACGCAGGACTCCGGGTCGAGGACGTGACCGGGCTGATCTAC
AACCCCATCACAAACACGTGGCGGCTCGACAAAAACGACATCGACGTCAA
CTTTGCCATGTGTTTAAAGGGAGAGAGGGGCCAAGGCCAAAGAGGGAAGG
CCTGAAGCCCAGAAAATAGTCGAAGGTATCGTACATGGAAAGCCCTTGTA
CAGTGGGCGACGGGCGGGCATTTCGCAATCTCAATGTAAGGAGGCTACGT
CCTGTATTGCGTTGGAGACAGCTGAACGCGATTGAGGGTATTGCGTGCCA
TGGAAGTGAACTTCATGTGAAGATAGAATGAGAGCTACGGCACTCATGCC
TATTCTCTTAGGCTGCAATCTGTGGGCTCTCACAGAAATTTCTCCACGGC
CCCGTCAAAAGCACGCGCCATGTGGTAGGACTGATGAGTGAGTCTGGCCC
TGGAAGAAGGGGAGGAGCCCCCGTTTTTTGGGGGCGTGGTACGCTCTAGT
AGTCAGTGCCACGCGATGTCATCCACAATTCATGCCACTACCTGCCCTCA
CGCCTGGAAACATGCGATTCAACCCGGTGTGCGTTCAGCATGAAGGAGAA
GTCAGTAGCCAGCCTGATGTGACGGGAGGATACGCGCATGCTATGGAGTG
AAACTGATATCGAATCACGGTGAATGGTACCGAAACGCCAGTGTGACTGG
AAAGAAAGGGATGCAACCGTAAAGGGGCAGAGTCTTCTGCTTTATATCGA
TTAGTCTTTCGAAAATGC
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Coding sequence (CDS) from alignment at CM002462.1:1019757..1021324-

>rna4164 ID=rna4164|Name=rna4164|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002462.1:1019757..1021324- (Nannochloropsis gaditana)
GCACGCACCAATGGAAGAAATTCCTTCAGCCTCAAGAAATTGCGCGAATG
GGTGCCGACGCAGGACTCCGGGTCGAGGACGTGACCGGGCTGATCTACAA
CCCCATCACAAACACGTGGCGGCTCGACAAAAACGACATCGACGTCAACT
TTGCCATGTGTTTAAAGGGAGAGAGGGGCCAAGGCCAAAGAGGGAAGGCC
TGACATTCTAAGAGCAGGGGAGATGGAAAGGGCGGGCGCGTGGTCCTCAC
GACCATCAACCGCACCGTCAAGGCCTACCTGCTTGCCGTTCTGGGCGCGG
AGTACATCGCTCGCATCATTCCCCGAGATGCTGGTGGAGACAGAAGAGGC
ACGCACCAATGGAAGAAATTCCTTCAGCCTCAAGAAATTGCGCGAATGGG
TGCCGACGCAGGACTCCGGGTCGAGGACGTGACCGGGCTGATCTACAACC
CCATCACAAACACGTGGCGGCTCGACAAAAACGACATCGACGTCAACTTT
GCCATGTGTTTAAAGGGAGAGAGGGGCCAAGGCCAAAGAGGGAAGGCCTG
ACATTCTAAGAGCAGGGGAGATGGAAAGGGCGGGCGCGTGGTCCTCACGA
CCATCAACCGCACCGTCAAGGCCTACCTGCTTGCCGTTCTGGGCGCGGAG
TACATCGCTCGCATCATTCCCCGAGATGCTGGTGGAGACAGAAGAGGCAC
GCACCAATGGAAGAAATTCCTTCAGCCTCAAGAAATTGCGCGAATGGGTG
CCGACGCAGGACTCCGGGTCGAGGACGTGACCGGGCTGATCTACAACCCC
ATCACAAACACGTGGCGGCTCGACAAAAACGACATCGACGTCAACTTTGC
CATGTGTTTAAAGGGAGAGAGGGGCCAAGGCCAAAGAGGGAAGGCCTGAC
ATTCTAAGAGCAGGGGAGATGGAAAGGGCGGGCGCGTGGTCCTCACGACC
ATCAACCGCACCGTCAAGGCCTACCTGCTTGCCGTTCTGGGCGCGGAGTA
CATCGCTCGCATCATTCCCCGAGATGCTGGTGGAGACAGAAGAG
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Synonyms
Publications