rna4161, rna4161 (mRNA) Nannochloropsis gaditana

Overview
Namerna4161
Unique Namerna4161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationCM002462.1:1015294..1016395 +

Link to JBrowse

Properties
Property NameValue
Productcullin protein 1
Orig transcript idgnl|cribi|Naga_102075g1.2492.mrna
Orig protein idgnl|cribi|Naga_102075g1.2492
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1015294..1016395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102075g1gene4004Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4161rna4161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26522.1cds4151Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4161 ID=rna4161|Name=rna4161|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGCGAGTGCGCCTCCCCCGAACCCCATCACAATCGAAGAGGGATGGGA
AAAGGAAATTCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACG
AGGGATTGCAAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATAC
GTGCACATCTACACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTT
TAACTGGTCAGAACCGCTTTATCAAAAACACAACGAGACCATCTCGGACT
ACCTGACGCGGACGGTCCTTCCCTCCCTCCGGAACCATCACAAAGAATAC
CTCTTGGTGGAAGTTAAACGCCGATGGGAGAACCATAAAATTATGAACGA
GTGGATGCGGAAATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGT
GTACGACGTGGTCAAACCGGACGTGGTGCAGGCGATGCTGGCTATGA
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protein sequence of rna4161

>rna4161-protein ID=rna4161-protein|Name=rna4161|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDP
NFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNAD
LLSSFCDRILKKGGEKLGDAEVENHLEKVREDRREGGR
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mRNA from alignment at CM002462.1:1015294..1016395+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4161 ID=rna4161|Name=rna4161|organism=Nannochloropsis gaditana|type=mRNA|length=1102bp|location=Sequence derived from alignment at CM002462.1:1015294..1016395+ (Nannochloropsis gaditana)
GTCGTTGTGTCGCCAACACAACAAGCCACATAACGACAAACAACGAAGTT
CTTGTGACAAgcttcattccttcctttcaaTCCACCATTGACGCCcgccc
ctcactccctcactccctccctccctcgcccccctaGACCTTTCCCGCAT
GTAtcgcctcttctcccgggTCCCAAGCGGCCTCCTGCCCATGGCCAAGA
TCGTCCAAGCGCACATTGAGCGGATGGGGAACGAAGTCATCAATCAACGG
GAAGCCCGCATCCATGTACGTagactttcccctccctccctccctccctc
cctcccttcctccttcccttcctccatcgctcgctccctccctcctccct
ccctcccttcctccctcccttccacccttgCGCGCACATCTAATGCCTCG
ATCAACGCCCtcacaggaggaaggagaaaaggacaCGAACCAAGATCCCA
ATTTTGTGAAGGTACGaagacgcctccctccctcccttcctgcgtccatc
cctcctgcctttccctgcccccttctcccttccctctagCGTTCTGAAGG
TGaccacgcttcctccccgtaccTCAAccgctccttttcctcttcttcct
ctgcttctttcgTTCGaccaggccctcctctccctccacgacaAATTTGT
AGGGGTTGTCAATGCCCAATTCGAAAAAAATTCTCTCTTCCACAAAGCGC
TCAAGGAAGCCTTTGTGGAGTTTGTCAACAAGGTacccctcctgcccgcc
tcctcgtccccccatccctcgttattttctttttattttccCCATCTTCC
CCACCAGCTTTTTGGTGCTTTGGAATCGATCCAATGATGCCTGTGACCTT
ATGCcatgcttccctttcctacttccgccccctctttttcgcccCAACCA
TCCCCAATCCCCGTTTTAAGATTGCctcacccttccccctcttttcccct
ggTATCAGGACGTGGGCAAATTTAAAAATGCAGatttgctctcctccttt
tgcgACCGGATACTtaagaaggggggggagaaacTGGGGGACGCGGAGGT
AGAAAACCATCTGGAGAAGGTAAGGGAggataggagggagggggggaggt
ag
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Coding sequence (CDS) from alignment at CM002462.1:1015294..1016395+

>rna4161 ID=rna4161|Name=rna4161|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at CM002462.1:1015294..1016395+ (Nannochloropsis gaditana)
ATGTAtcgcctcttctcccgggTCCCAAGCGGCCTCCTGCCCATGGCCAA
GATCGTCCAAGCGCACATTGAGCGGATGGGGAACGAAGTCATCAATCAAC
GGGAAGCCCGCATCCATgaggaaggagaaaaggacaCGAACCAAGATCCC
AATTTTGTGAAGgccctcctctccctccacgacaAATTTGTAGGGGTTGT
CAATGCCCAATTCGAAAAAAATTCTCTCTTCCACAAAGCGCTCAAGGAAG
CCTTTGTGGAGTTTGTCAACAAGGACGTGGGCAAATTTAAAAATGCAGat
ttgctctcctccttttgcgACCGGATACTtaagaaggggggggagaaacT
GGGGGACGCGGAGGTAGAAAACCATCTGGAGAAGGTAAGGGAggatagga
gggagggggggaggtagATGTAtcgcctcttctcccgggTCCCAAGCGGC
CTCCTGCCCATGGCCAAGATCGTCCAAGCGCACATTGAGCGGATGGGGAA
CGAAGTCATCAATCAACGGGAAGCCCGCATCCATgaggaaggagaaaagg
acaCGAACCAAGATCCCAATTTTGTGAAGgccctcctctccctccacgac
aAATTTGTAGGGGTTGTCAATGCCCAATTCGAAAAAAATTCTCTCTTCCA
CAAAGCGCTCAAGGAAGCCTTTGTGGAGTTTGTCAACAAGGACGTGGGCA
AATTTAAAAATGCAGatttgctctcctccttttgcgACCGGATACTtaag
aaggggggggagaaacTGGGGGACGCGGAGGTAGAAAACCATCTGGAGAA
GGTAAGGGAggataggagggagggggggaggtagATGTAtcgcctcttct
cccgggTCCCAAGCGGCCTCCTGCCCATGGCCAAGATCGTCCAAGCGCAC
ATTGAGCGGATGGGGAACGAAGTCATCAATCAACGGGAAGCCCGCATCCA
TgaggaaggagaaaaggacaCGAACCAAGATCCCAATTTTGTGAAGgccc
tcctctccctccacgacaAATTTGTAGGGGTTGTCAATGCCCAATTCGAA
AAAAATTCTCTCTTCCACAAAGCGCTCAAGGAAGCCTTTGTGGAGTTTGT
CAACAAGGACGTGGGCAAATTTAAAAATGCAGatttgctctcctcctttt
gcgACCGGATACTtaagaaggggggggagaaacTGGGGGACGCGGAGGTA
GAAAACCATCTGGAGAAGGTAAGGGAggataggagggagggggggaggta
gATGTAtcgcctcttctcccgggTCCCAAGCGGCCTCCTGCCCATGGCCA
AGATCGTCCAAGCGCACATTGAGCGGATGGGGAACGAAGTCATCAATCAA
CGGGAAGCCCGCATCCATgaggaaggagaaaaggacaCGAACCAAGATCC
CAATTTTGTGAAGgccctcctctccctccacgacaAATTTGTAGGGGTTG
TCAATGCCCAATTCGAAAAAAATTCTCTCTTCCACAAAGCGCTCAAGGAA
GCCTTTGTGGAGTTTGTCAACAAGGACGTGGGCAAATTTAAAAATGCAGa
tttgctctcctccttttgcgACCGGATACTtaagaaggggggggagaaac
TGGGGGACGCGGAGGTAGAAAACCATCTGGAGAAGGTAAGGGAggatagg
agggagggggggaggtag
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Synonyms
Publications