EWM26522.1, cds4151 (CDS) Nannochloropsis gaditana

Overview
NameEWM26522.1
Unique Namecds4151
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1015442..1015558 +
Alignment locationCM002462.1:1015710..1015754 +
Alignment locationCM002462.1:1015915..1016025 +
Alignment locationCM002462.1:1016252..1016395 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26522.1
Productcullin protein 1
Orig transcript idgnl|cribi|Naga_102075g1.2492.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1015442..1015558 +
CM002462.1supercontigCM002462.1:1015710..1015754 +
CM002462.1supercontigCM002462.1:1015915..1016025 +
CM002462.1supercontigCM002462.1:1016252..1016395 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: INTERPRO
TermDefinition
IPR016159Cullin_repeat-like_dom
IPR001373Cullin_N
Homology
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|585108599|gb|EWM26522.1| (cullin protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 279.641 bits (714), Expect = 2.747e-95
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKVREDRREGGR 138
            MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKVREDRREGGR
Sbjct:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKVREDRREGGR 138          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|298711209|emb|CBJ32430.1| (CULlin protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 198.749 bits (504), Expect = 9.429e-58
Identity = 95/129 (73.64%), Postives = 110/129 (85.27%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLF+R+P GL PMA+I++ HI  MGNE+I +REA+I E GEKDTNQDPNFVK LL+LHDK++ VVN QF  NSL  KALKEAFV+FVN+DVGKFKNADL+ SFCDRILK GGEKLGDAEVE +L KV
Sbjct:  295 MYRLFNRLPKGLEPMAEIIKDHITEMGNEIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMAVVNDQFAGNSLLQKALKEAFVDFVNRDVGKFKNADLMCSFCDRILKTGGEKLGDAEVEEYLAKV 422          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|676378097|ref|XP_009032327.1| (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >gi|323456805|gb|EGB12671.1| hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens])

HSP 1 Score: 199.904 bits (507), Expect = 1.183e-57
Identity = 95/129 (73.64%), Postives = 112/129 (86.82%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLFSRVP+GL PMA +V+AHIE MGNEVIN+REAR+ E GEKD+NQDP FVK LL+LHDK++ VV+AQF  N+LF KALKEAFVEF N+DVGKF NA+L+SSFCDRILK GGEKL D +VE++LEK 
Sbjct:  293 MYRLFSRVPNGLPPMAALVRAHIEAMGNEVINRREARL-EAGEKDSNQDPAFVKELLALHDKYMAVVSAQFAGNALFQKALKEAFVEFTNRDVGKFTNAELMSSFCDRILKSGGEKLSDEDVESYLEKT 420          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|298706020|emb|CBJ29134.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 160.999 bits (406), Expect = 1.174e-44
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0
Query:    2 YRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            YRLF+R+P GL PMA+I++ HI  M NE+I +  A+I E GEKD NQDPNFVK LL+LH K++ VVN QF  NSL  KAL  AFV FVN+DVGKFKNADL+ SFCDRI+K GGEKLGD  VE +L KV
Sbjct:   33 YRLFNRLPKGLEPMAEIIKDHITEMRNEIIKRPGAKI-EGGEKDINQDPNFVKELLALHGKYMAVVNDQFVGNSLLQKAL--AFVGFVNRDVGKFKNADLMCSFCDRIMKTGGEKLGD--VEEYLAKV 155          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|673027716|ref|XP_008867819.1| (hypothetical protein H310_05001 [Aphanomyces invadans] >gi|574476592|gb|ETW03590.1| hypothetical protein H310_05001 [Aphanomyces invadans])

HSP 1 Score: 162.54 bits (410), Expect = 5.228e-44
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLFSRVP GL P+A +V+ H+E +GN++++ R   I  +  KD + DP F+K +L+LHDK+V VV  QF  NSLF KALKEAFVEFVNKDVGK  +A L+S+FCDRILK GGEKL D +VE +LEKV
Sbjct:  291 MYRLFSRVPEGLAPIAALVRRHVEAVGNQIVDLRTQAITTDNIKDPSADPAFIKEILALHDKYVKVVQEQFGGNSLFQKALKEAFVEFVNKDVGKDCSAKLMSTFCDRILKSGGEKLSDTQVEEYLEKV 419          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|698810158|ref|XP_009838108.1| (hypothetical protein H257_12555 [Aphanomyces astaci] >gi|574106911|gb|ETV72426.1| hypothetical protein H257_12555 [Aphanomyces astaci])

HSP 1 Score: 162.155 bits (409), Expect = 9.503e-44
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLFSRVP GL P+A +V+ HIE +GN++++ R   I  +  KD + DP F+K +L+LHDK+V VV  QF  NSLF KALKEAFVEFVNKDVGK  +A L+S+FCDRILK GGEKL D +VE +LEKV
Sbjct:  292 MYRLFSRVPEGLAPIAVLVRRHIEAVGNQIVDLRTQAIVSDNIKDPSADPAFIKEILALHDKYVKVVQDQFGGNSLFQKALKEAFVEFVNKDVGKDCSAKLMSTFCDRILKSGGEKLSDVQVEEYLEKV 420          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|669138794|ref|XP_008604965.1| (hypothetical protein SDRG_01226 [Saprolegnia diclina VS20] >gi|530743009|gb|EQC41251.1| hypothetical protein SDRG_01226 [Saprolegnia diclina VS20])

HSP 1 Score: 161.384 bits (407), Expect = 1.488e-43
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLFSRVP GL P+A +V+ HIE +GNE++ +R A I  +  KD + DP F+K +L+LHDK+  VV  QF  NSLF KALKEAFVEFVNKDVGK  +A L+S+FCDRILK GGEKL D +VE +L K+
Sbjct:  293 MYRLFSRVPEGLAPIATLVRRHIETVGNEIVERRTAAIASDNIKDPSSDPTFIKDILALHDKYKLVVQEQFGGNSLFQKALKEAFVEFVNKDVGKDCSAKLMSTFCDRILKSGGEKLSDDQVEEYLVKI 421          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|1173949084|gb|OQR97158.1| (CULlin protein 1 [Achlya hypogyna])

HSP 1 Score: 160.999 bits (406), Expect = 2.134e-43
Identity = 78/129 (60.47%), Postives = 98/129 (75.97%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            M+RLFSRVP GL P+A +V+ HIE +GNE++ +R A I  +  KD   DP F+K +L+LHDK+  VV  QF  NSLF KALKEAFVEFVNKDVGK  +A L+S+FCDRILK GGEKL D +VE+ L+K+
Sbjct:  293 MFRLFSRVPEGLAPIATLVRRHIETVGNEIVERRTAAIASDNIKDPASDPTFIKDILALHDKYKQVVQEQFGGNSLFQKALKEAFVEFVNKDVGKDCSAKLMSTFCDRILKSGGEKLSDDQVEDFLQKI 421          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|813109733|ref|XP_012194667.1| (hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65] >gi|641541251|gb|KDO35014.1| hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 160.229 bits (404), Expect = 4.895e-43
Identity = 79/129 (61.24%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLFSRVP GL P+A +V+ HIE +GNE++ +R A I  +  KD + DP F+K +L+LHDK+  VV  QF  NSLF KALKEAFVEFVNKDVGK  +A L+S+FCDRILK GGEKL D +VE  L K+
Sbjct:  293 MYRLFSRVPDGLAPIATLVRRHIETVGNEIVERRTAAIASDNIKDPSSDPTFIKDILALHDKYKLVVQEQFGGNSLFQKALKEAFVEFVNKDVGKDCSAKLMSTFCDRILKSGGEKLSDDQVEEFLLKI 421          
BLAST of EWM26522.1 vs. NCBI_GenBank
Match: gi|567948654|gb|ETK74397.1| (hypothetical protein L915_18816 [Phytophthora parasitica] >gi|567977322|gb|ETL27827.1| hypothetical protein L916_18712 [Phytophthora parasitica] >gi|568036664|gb|ETM34268.1| hypothetical protein L914_18630 [Phytophthora parasitica])

HSP 1 Score: 157.532 bits (397), Expect = 3.679e-42
Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    1 MYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEVENHLEKV 129
            MYRLF+R+ +GL P+A +VQ HI  +GN+++ +R   +     +D + DP F+K +L++HDKF  +VN QF  NSLF KALKEAFVEFVNKDVG   +A L+S+FCDRILK GGEKL D +VE++LEKV
Sbjct:  293 MYRLFARLKNGLEPIADLVQQHITAVGNDIVAKRANAVASGNVRDPSSDPTFIKDILAIHDKFRSIVNEQFAGNSLFQKALKEAFVEFVNKDVGPDSSAKLMSTFCDRILKTGGEKLSDEQVEDYLEKV 421          
The following BLAST results are available for this feature:
BLAST of EWM26522.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108599|gb|EWM26522.1|2.747e-95100.00cullin protein 1 [Nannochloropsis gaditana][more]
gi|298711209|emb|CBJ32430.1|9.429e-5873.64CULlin protein 1 [Ectocarpus siliculosus][more]
gi|676378097|ref|XP_009032327.1|1.183e-5773.64hypothetical protein AURANDRAFT_52007 [Aureococcus... [more]
gi|298706020|emb|CBJ29134.1|1.174e-4465.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|673027716|ref|XP_008867819.1|5.228e-4461.24hypothetical protein H310_05001 [Aphanomyces invad... [more]
gi|698810158|ref|XP_009838108.1|9.503e-4462.02hypothetical protein H257_12555 [Aphanomyces astac... [more]
gi|669138794|ref|XP_008604965.1|1.488e-4361.24hypothetical protein SDRG_01226 [Saprolegnia dicli... [more]
gi|1173949084|gb|OQR97158.1|2.134e-4360.47CULlin protein 1 [Achlya hypogyna][more]
gi|813109733|ref|XP_012194667.1|4.895e-4361.24hypothetical protein SPRG_01077 [Saprolegnia paras... [more]
gi|567948654|gb|ETK74397.1|3.679e-4256.59hypothetical protein L915_18816 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4161rna4161Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications