rna4157, rna4157 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4157
Unique Name	rna4157
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2199
Alignment location	CM002462.1:1000503..1002827 -

Link to JBrowse

Properties


Property Name	Value
Product	allantoicase
Orig transcript id	gnl\|cribi\|Naga_100141g4.8371.mrna
Orig protein id	gnl\|cribi\|Naga_100141g4.8371
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1000503..1002827 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g4	gene4000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26524.1	cds4147	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4157	rna4157-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1000503..1002827-
coding sequence from alignment at CM002462.1:1000503..1002827-

mRNA sequence

>rna4157 ID=rna4157|Name=rna4157|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp
GATAATGTGCGTGCCAAAAAACAGGCTAGCTGTCCGCGCGACGCACATGT
GCGGCCATGAAGTGCTATCTCTACGACGACGATAATCTGCCCAGCAAGCG
GAGGCCTCAAGTATACACGTGCGTTTCCAGGGAAGGAGTATTTTTTTTTG
GGGGTATCTCGCATTTCCCCTATAAATCTCATTTCTACATGTTCAAGCCC
GAGGCGACATGTCCGTTTTTCAACAGGAGCTGTACTGCACGCAACCTTTC
CTTAGATAAATCCAACTTCGCAAGTCGTGGATCTCAATGGCTGATCGACC
CATGCAACAGAGTCATACGACTGCCCTGCCCGATTTTGTCGAAGAAACGG
ACCTGGCTTTAAGTCGTTTTGGTGGCAGAATATGCTTTGCAACCGACGAT
TGGTTTGCTGCCGCAGAGAATTTACTCGATCACGAGGAACCGATTTTTAT
CCCAGATAAATTCACAGCCTACGGAAAATGGATGGATGGGTGGGAGACAC
GGCGAAAACGTACAGCAGGTCACGATTGGTGTATTATCAAATTGGCTTTC
CCCGGTCGCATTTTGGGCGTGGGTGTGGACACCTCCTTCTTCACAGGCAA
CTACGTGCCTCGCTGCTCTATCCAAGCTGCCTCATACATTGATGACAACG
AACCCATCGCCCTTCAAAAACTGGCTGCAGCACGCACTGAGGTTCCAGGT
GGAGATAAAATAGGCAGCAAGGCCTCTGAGGAGGAGATGACCTTAGCAGC
GAGCGTCCATTCGGATAGTTGGGAAACCATTTTACCCTTCACCCCCTTGG
GTGCCGGTTACAAAGATACGTGCCACAACTATTTTGCCATTGAAGCCACA
GAGCGCTTCACCCACCTGCGCCTGAACATGTTTCCCGACGGCGGCATCGC
GCGTCTGCGTGTGTACGGAATCGTCGCCCGAGCCTGGCATTTGGTCCCGG
CCACCCAGGTCGTGGATCTGGCAGCCGTTGAGAATGGCGGAAAGGCCATC
GGATGCAGTGACAAGCACTATGGCCACCCTCGGAACTTGATCAACCCGGG
GCGTGGGATCAACATGGGGGACGGTTGGGAGACCGCTCGGAAGTTGACCC
GGCCTCCCGTGCTCGAGCCTGACGAAGGAGGACTTATCAAGGTACCCGGA
AGTGATTGGGCCGTTTTACGCTTGGGAACGCCTGGGAAGGTCCGAGAGCT
TGAAATTGACACGTGTTGGTTCAAGGGGAATTACCCTGAAAGCTGTCAGG
TGGAGGCAGTCGAGTTGCCCCTGGACATGTCGAATGAGGACGTGCACAAG
GCGCAAGAGCTAGGGGAAGTGCCTTGGCGCATCTTGCTGCCTAGAACAAA
GTTGGGAGCAGATCAACAGGCTTACTTTGATGTGGGGGCGGAGGGAGGAC
GGGCGGAAGCGGGGGGGGCGGTGACGCACTTAAAACTGACAATATATCCC
GATGGAGGGATCTCACGAGTGCGCGCCCGAGGGACCAAAGTGGAAGTATA
AGTCAATGACACCGGCTTTGCCGTACTAAAAACAATTGAACGTGCGTTCC
TGGTAGGGGAGGGACGGACAAGGAGAGGGAGCGTCACAGGGAAGGGTTGT
GTGGCATGGGGAAGACCTCGATGCGCAGGAGGCCCATGTCAGGCGCCAAC
GGGCCCAAAAGAAGGAGTGCACGAAAGTTGTGATTCGAAAGGGATGTGGC
TGTTGGAGAATGGTAGTTGGATGTTAAAGAGGACCGCGGGGGGAACGCAA
TGCTAGCGGGCATCGGGTTCCCCGAGAAAGGCAAGTTCAAAGGGATGGAC
GCTTCGATGCGGTAGATGATAAATGTGCTTGCTGCACTTGATATCATGTC
TTTTGTGATCGTTCATTCATGTGGCATCCATTCATACAAAGCATCTGTGA
ACTAATTATTAACCCTCTCCAATTCGTCATATTCCTCATCAATCCAAGCC
TTCGAGGCCCCGATGCGTAAGACGCTGTAAACCCTCACAGGTGTACAACG
AGCAGGGGAACGTCGTTGCATATATACAAGGAAAAAGTGAAACAATGTTT
TTCCTCTCACGACCCTCAGCCGATCCTAATAATGAATACCTGAACCATCT
GAATATTACTCTCTTATACAAGCGATGTCTCGAGCTTTTCTTCGCGAGGT
ATCAAGGCTAGCCTGGCCGTCCTGAAAAATGCTTTCTGGACCTCACTCT

protein sequence of rna4157

>rna4157-protein ID=rna4157-protein|Name=rna4157|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MADRPMQQSHTTALPDFVEETDLALSRFGGRICFATDDWFAAAENLLDHE
EPIFIPDKFTAYGKWMDGWETRRKRTAGHDWCIIKLAFPGRILGVGVDTS
FFTGNYVPRCSIQAASYIDDNEPIALQKLAAARTEVPGGDKIGSKASEEE
MTLAASVHSDSWETILPFTPLGAGYKDTCHNYFAIEATERFTHLRLNMFP
DGGIARLRVYGIVARAWHLVPATQVVDLAAVENGGKAIGCSDKHYGHPRN
LINPGRGINMGDGWETARKLTRPPVLEPDEGGLIKVPGSDWAVLRLGTPG
KVRELEIDTCWFKGNYPESCQVEAVELPLDMSNEDVHKAQELGEVPWRIL
LPRTKLGADQQAYFDVGAEGGRAEAGGAVTHLKLTIYPDGGISRVRARGT
KVEV

mRNA from alignment at CM002462.1:1000503..1002827-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4157 ID=rna4157|Name=rna4157|organism=Nannochloropsis gaditana|type=mRNA|length=2325bp|location=Sequence derived from alignment at CM002462.1:1000503..1002827- (Nannochloropsis gaditana)
TGTGCGGCCATGAAGTGCTATCTCTACGACGACGATAATCTGCCCAGCAA
GCGGAGGCCTCAAGTATACACGTGCGTTTCCAGGGAAGGAGTATTTTTTT
TTGGGGGTATCTCGCATTTCCCCTATAAATCTCATTTCTACATGTTCAAG
CCCGAGGCGACATGTCCGTTTTTCAACAGGTCTTATAAATAATACCGTGT
ACGCCGACAGGACCTCATACCCTTCTCGAGGCTGACATTGTCTATTGTTG
CTGTTTGGTAGGGTAAAGGCCTGTGCTTTTGTATCAACTCCGTGAATGTG
CTTTGCCAATATCATCAAATGGGCTTCAATAACCTCCCCTCGTCCCACGC
AGGAGCTGTACTGCACGCAACCTTTCCTTAGATAAATCCAACTTCGCAAG
TCGTGGATCTCAATGGCTGATCGACCCATGCAACAGAGTCATACGACTGC
CCTGCCCGATTTTGTCGAAGAAACGGACCTGGCTTTAAGTCGTTTTGGTG
GCAGAATATGCTTTGCAACCGACGATTGGTTTGCTGCCGCAGAGAATTTA
CTCGATCACGAGGAACCGATTTTTATCCCAGATAAATTCACAGCCTACGG
AAAATGGATGGATGGGTGGGAGACACGGCGAAAACGTACAGCAGGTCACG
ATTGGTGTATTATCAAATTGGCTTTCCCCGGTCGCATTTTGGGCGTGGGT
GTGGACACCTCCTTCTTCACAGGCAACTACGTGCCTCGCTGCTCTATCCA
AGCTGCCTCATACATTGATGACAACGAACCCATCGCCCTTCAAAAACTGG
CTGCAGCACGCACTGAGGTTCCAGGTGGAGATAAAATAGGCAGCAAGGCC
TCTGAGGAGGAGATGACCTTAGCAGCGAGCGTCCATTCGGATAGTTGGGA
AACCATTTTACCCTTCACCCCCTTGGGTGCCGGTTACAAAGATACGTGCC
ACAACTATTTTGCCATTGAAGCCACAGAGCGCTTCACCCACCTGCGCCTG
AACATGTTTCCCGACGGCGGCATCGCGCGTCTGCGTGTGTACGGAATCGT
CGCCCGAGCCTGGCATTTGGTCCCGGCCACCCAGGTCGTGGATCTGGCAG
CCGTTGAGAATGGCGGAAAGGCCATCGGATGCAGTGACAAGCACTATGGC
CACCCTCGGAACTTGATCAACCCGGGGCGTGGGATCAACATGGGGGACGG
TTGGGAGACCGCTCGGAAGTTGACCCGGCCTCCCGTGCTCGAGCCTGACG
AAGGAGGACTTATCAAGGTACCCGGAAGTGATTGGGCCGTTTTACGCTTG
GGAACGCCTGGGAAGGTCCGAGAGCTTGAAATTGACACGTGTTGGTTCAA
GGGGAATTACCCTGAAAGCTGTCAGGTGGAGGCAGTCGAGTTGCCCCTGG
ACATGTCGAATGAGGACGTGCACAAGGCGCAAGAGCTAGGGGAAGTGCCT
TGGCGCATCTTGCTGCCTAGAACAAAGTTGGGAGCAGATCAACAGGCTTA
CTTTGATGTGGGGGCGGAGGGAGGACGGGCGGAAGCGGGGGGGGCGGTGA
CGCACTTAAAACTGACAATATATCCCGATGGAGGGATCTCACGAGTGCGC
GCCCGAGGGACCAAAGTGGAAGTATAAGTCAATGACACCGGCTTTGCCGT
ACTAAAAACAATTGAACGTGCGTTCCTGGTAGGGGAGGGACGGACAAGGA
GAGGGAGCGTCACAGGGAAGGGTTGTGTGGCATGGGGAAGACCTCGATGC
GCAGGAGGCCCATGTCAGGCGCCAACGGGCCCAAAAGAAGGAGTGCACGA
AAGTTGTGATTCGAAAGGGATGTGGCTGTTGGAGAATGGTAGTTGGATGT
TAAAGAGGACCGCGGGGGGAACGCAATGCTAGCGGGCATCGGGTTCCCCG
AGAAAGGCAAGTTCAAAGGGATGGACGCTTCGATGCGGTAGATGATAAAT
GTGCTTGCTGCACTTGATATCATGTCTTTTGTGATCGTTCATTCATGTGG
CATCCATTCATACAAAGCATCTGTGAACTAATTATTAACCCTCTCCAATT
CGTCATATTCCTCATCAATCCAAGCCTTCGAGGCCCCGATGCGTAAGACG
CTGTAAACCCTCACAGGTGTACAACGAGCAGGGGAACGTCGTTGCATATA
TACAAGGAAAAAGTGAAACAATGTTTTTCCTCTCACGACCCTCAGCCGAT
CCTAATAATGAATACCTGAACCATCTGAATATTACTCTCTTATACAAGCG
ATGTCTCGAGCTTTTCTTCGCGAGGTATCAAGGCTAGCCTGGCCGTCCTG
AAAAATGCTTTCTGGACCTCACTCT

Coding sequence (CDS) from alignment at CM002462.1:1000503..1002827-

>rna4157 ID=rna4157|Name=rna4157|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002462.1:1000503..1002827- (Nannochloropsis gaditana)
ATGGCTGATCGACCCATGCAACAGAGTCATACGACTGCCCTGCCCGATTT
TGTCGAAGAAACGGACCTGGCTTTAAGTCGTTTTGGTGGCAGAATATGCT
TTGCAACCGACGATTGGTTTGCTGCCGCAGAGAATTTACTCGATCACGAG
GAACCGATTTTTATCCCAGATAAATTCACAGCCTACGGAAAATGGATGGA
TGGGTGGGAGACACGGCGAAAACGTACAGCAGGTCACGATTGGTGTATTA
TCAAATTGGCTTTCCCCGGTCGCATTTTGGGCGTGGGTGTGGACACCTCC
TTCTTCACAGGCAACTACGTGCCTCGCTGCTCTATCCAAGCTGCCTCATA
CATTGATGACAACGAACCCATCGCCCTTCAAAAACTGGCTGCAGCACGCA
CTGAGGTTCCAGGTGGAGATAAAATAGGCAGCAAGGCCTCTGAGGAGGAG
ATGACCTTAGCAGCGAGCGTCCATTCGGATAGTTGGGAAACCATTTTACC
CTTCACCCCCTTGGGTGCCGGTTACAAAGATACGTGCCACAACTATTTTG
CCATTGAAGCCACAGAGCGCTTCACCCACCTGCGCCTGAACATGTTTCCC
GACGGCGGCATCGCGCGTCTGCGTGTGTACGGAATCGTCGCCCGAGCCTG
GCATTTGGTCCCGGCCACCCAGGTCGTGGATCTGGCAGCCGTTGAGAATG
GCGGAAAGGCCATCGGATGCAGTGACAAGCACTATGGCCACCCTCGGAAC
TTGATCAACCCGGGGCGTGGGATCAACATGGGGGACGGTTGGGAGACCGC
TCGGAAGTTGACCCGGCCTCCCGTGCTCGAGCCTGACGAAGGAGGACTTA
TCAAGGTACCCGGAAGTGATTGGGCCGTTTTACGCTTGGGAACGCCTGGG
AAGGTCCGAGAGCTTGAAATTGACACGTGTTGGTTCAAGGGGAATTACCC
TGAAAGCTGTCAGGTGGAGGCAGTCGAGTTGCCCCTGGACATGTCGAATG
AGGACGTGCACAAGGCGCAAGAGCTAGGGGAAGTGCCTTGGCGCATCTTG
CTGCCTAGAACAAAGTTGGGAGCAGATCAACAGGCTTACTTTGATGTGGG
GGCGGAGGGAGGACGGGCGGAAGCGGGGGGGGCGGTGACGCACTTAAAAC
TGACAATATATCCCGATGGAGGGATCTCACGAGTGCGCGCCCGAGGGACC
AAAGTGGAAGTATAA

Synonyms

Publications