rna4156, rna4156 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4156
Unique Name	rna4156
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1889
Alignment location	CM002462.1:1000503..1002874 -

Link to JBrowse

Properties


Property Name	Value
Product	allantoicase
Orig transcript id	gnl\|cribi\|Naga_100141g4.8372.mrna
Orig protein id	gnl\|cribi\|Naga_100141g4.8372
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1000503..1002874 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g4	gene4000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26525.1	cds4146	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4156	rna4156-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1000503..1002874-
coding sequence from alignment at CM002462.1:1000503..1002874-

mRNA sequence

>rna4156 ID=rna4156|Name=rna4156|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp
AGCTCCTTGATGTCCAAACTTGCTGCAACTAGCAATTTACACCGGTGAAC
GCCTTGTGCAACGTCGGGCTTCAATTCCGATGTTTGGAAGGATTCATTGG
TCGTTTAGTGGTAATTCTGTAGAAGACATGCAAAAGGATGGCCTTACATC
TTGGCTAAGACGAGCGACTTGAAGCCAGCGCCACGACCGTGTTGAAGCGT
CAGATAAACCTCAACTATTTCACATTTCAAAGTCACAGCTCACAATCATG
CTTAATAGAGGAATTGTTCTTCAGGTAGCGTTCGTGGTGGTCTACTTTGC
GTGGATCGGCACGGCCTTTTACGTACCATCCCCCACGCCAAATTGGTGGC
TTGCTCCCAGTCCGAAGACAAGAGAAAACCCCTCCGCGTGCAAGTCTGCT
CACGTCATTCTGTGCGCATCATATCAAGAGCAACTCGCACGGGCTAGGGC
GGAAAAAGCTGCTCGACAGGCTGGAGGCGGTGCTGTCCCCCAGCCGCAGT
ATCAGCCACCCTCAGATGCGTATCGTGCCTCTTACCCCTCTCCGGCCAAG
CAAGCCCAGCAAGCCCAGACTGTTTCATACTCTCCACAGGAAGAACAGCA
ACGAAATCGACCACCACATTCGGGGAGTCCGTTGCCTCAGGAAACAAACG
AAGCAGTCGCGACGTTGCTCAACCTGCTAGGGGAGCGTCTCGGGACGGGG
CAGCCATTGGCACCGGAAAAAGTGCGGGTGTTCACCGCGGCAGCTGAGGC
TGTGATTAAGGAGGCACGCGGCATTGGATACAGCGTGAATGCACCGGTTG
GACAGCAGCAGGAGGCTTATCAGTCACAAGCGCAGACGTTTTATTCACCA
CAGCAGCCGAGGCAGCCGGAACAAACCCAACCGCATCACCAACAAGACTA
CCCAAGACATCAATCCCAGGCCCCATCGTTCACGGCCAGCGGTTTCGAGC
AAGACGAAGATATTCCTTGGGAAATGGGCTCGCGGACGTTGACGGGTCCG
GCGCCTGGTTTCCGGGCAGCTTCGGCCTACCAGCCTGCGGGAGCGGGTGG
TTTTGACGAAGAGGGGGATGACTTTGAGACTTACGGGCTGCCTCAACCTG
TGACAAGGCAAAAGAAAAGTCCATTCATGGAAACGCTGAAAGGCACGCCG
TTTTATGTGGACATTGCAGAGCAACCAGTGAGCTCGGACGAGTATCTGAG
GATTATCCAGAGCCGAATTAAAGCGGCTCAAATGAAACGCCGGCAGGAGC
AAGCTCATACGGGCATTGAGTCCGCAAATCATTACATGGAGGAATTAAAT
CGTAAAAAACAAGAACGTTTGCGATTAGAGGCGGAGCAGGCTCGACAGTG
GCAGGAAGGGGGTCAGTGAGAGCGTGGGGCGGATACCTGTTTCGAAGATA
ACTGGCCTGGAATAGAATGACGGGCGCATGTATCAAGAATTCATCATCGT
GAAAATAATTCTAGAAGGTGCTACATCCTCATAAAGTGATAATTTTAAGT
GATAATTTTTGACCGTAAATTTCTGTTATCGATCCTTTTCCGCGATTACG
ATCGTACACGGAAACATGAGAAACGGATACATATATGTTTTGCCTCTTAA
TCGAATTTTGATGCATTTATAAAGAATTCAATATCGTCCTAGTCACAACT
TCAAAAGAAATGGCGCCATGGACAATTTCTTTGTCCGCCGAATCGTCATG
GTCATGGCAAGTTCACAAGGCTTTCCATTAGAACAGACATTTAAGAATTT
GAATCTGCAACGGTTCGGAGAAGAGAAAACCTATGGAAACTGACATAATG
GGAATGAGAAATTGTGTTCCAGGATCCATGCGGATTTACGGAATTTAAAA
TTTACTTCTGGGCATGAGCTTTTTAGATATTTTAGTGGA

protein sequence of rna4156

>rna4156-protein ID=rna4156-protein|Name=rna4156|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MADRPMQQSHTTALPDFVEETDLALSRFGGRICFATDDWFAAAENLLDHE
EPIFIPDKFTAYGKWMDGWETRRKRTAGHDWCIIKLAFPGRILGVGVDTS
FFTGNYVPRCSIQAASYIDDNEPIALQKLAAARTEVPGGDKIGSKASEEE
MTLAASVHSDSWETILPFTPLGAGYKDTCHNYFAIEATERFTHLRLNMFP
DGGIARLRVYGIVARAWHLVPATQVVDLAAVENGGKAIGCSDKHYGHPRN
LINPGRGINMGDGWETARKLTRPPVLEPDEGGLIKVPGSDWAVLRLGTPG
KVRELEIDTCWFKGNYPESCQVEAVELPLDMSNEDVHKAQELGEVPWRIL
LPRTKLGADQQAYFDVGAEGGRAEAGGAVTHLKLTIYPDGGISRVRARGT
KVEV

mRNA from alignment at CM002462.1:1000503..1002874-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4156 ID=rna4156|Name=rna4156|organism=Nannochloropsis gaditana|type=mRNA|length=2372bp|location=Sequence derived from alignment at CM002462.1:1000503..1002874- (Nannochloropsis gaditana)
GATAATGTGCGTGCCAAAAAACAGGCTAGCTGTCCGCGCGACGCACATGT
GCGGCCATGAAGTGCTATCTCTACGACGACGATAATCTGCCCAGCAAGCG
GAGGCCTCAAGTATACACGTGCGTTTCCAGGGAAGGAGTATTTTTTTTTG
GGGGTATCTCGCATTTCCCCTATAAATCTCATTTCTACATGTTCAAGCCC
GAGGCGACATGTCCGTTTTTCAACAGGTCTTATAAATAATACCGTGTACG
CCGACAGGACCTCATACCCTTCTCGAGGCTGACATTGTCTATTGTTGCTG
TTTGGTAGGGTAAAGGCCTGTGCTTTTGTATCAACTCCGTGAATGTGCTT
TGCCAATATCATCAAATGGGCTTCAATAACCTCCCCTCGTCCCACGCAGG
AGCTGTACTGCACGCAACCTTTCCTTAGATAAATCCAACTTCGCAAGTCG
TGGATCTCAATGGCTGATCGACCCATGCAACAGAGTCATACGACTGCCCT
GCCCGATTTTGTCGAAGAAACGGACCTGGCTTTAAGTCGTTTTGGTGGCA
GAATATGCTTTGCAACCGACGATTGGTTTGCTGCCGCAGAGAATTTACTC
GATCACGAGGAACCGATTTTTATCCCAGATAAATTCACAGCCTACGGAAA
ATGGATGGATGGGTGGGAGACACGGCGAAAACGTACAGCAGGTCACGATT
GGTGTATTATCAAATTGGCTTTCCCCGGTCGCATTTTGGGCGTGGGTGTG
GACACCTCCTTCTTCACAGGCAACTACGTGCCTCGCTGCTCTATCCAAGC
TGCCTCATACATTGATGACAACGAACCCATCGCCCTTCAAAAACTGGCTG
CAGCACGCACTGAGGTTCCAGGTGGAGATAAAATAGGCAGCAAGGCCTCT
GAGGAGGAGATGACCTTAGCAGCGAGCGTCCATTCGGATAGTTGGGAAAC
CATTTTACCCTTCACCCCCTTGGGTGCCGGTTACAAAGATACGTGCCACA
ACTATTTTGCCATTGAAGCCACAGAGCGCTTCACCCACCTGCGCCTGAAC
ATGTTTCCCGACGGCGGCATCGCGCGTCTGCGTGTGTACGGAATCGTCGC
CCGAGCCTGGCATTTGGTCCCGGCCACCCAGGTCGTGGATCTGGCAGCCG
TTGAGAATGGCGGAAAGGCCATCGGATGCAGTGACAAGCACTATGGCCAC
CCTCGGAACTTGATCAACCCGGGGCGTGGGATCAACATGGGGGACGGTTG
GGAGACCGCTCGGAAGTTGACCCGGCCTCCCGTGCTCGAGCCTGACGAAG
GAGGACTTATCAAGGTACCCGGAAGTGATTGGGCCGTTTTACGCTTGGGA
ACGCCTGGGAAGGTCCGAGAGCTTGAAATTGACACGTGTTGGTTCAAGGG
GAATTACCCTGAAAGCTGTCAGGTGGAGGCAGTCGAGTTGCCCCTGGACA
TGTCGAATGAGGACGTGCACAAGGCGCAAGAGCTAGGGGAAGTGCCTTGG
CGCATCTTGCTGCCTAGAACAAAGTTGGGAGCAGATCAACAGGCTTACTT
TGATGTGGGGGCGGAGGGAGGACGGGCGGAAGCGGGGGGGGCGGTGACGC
ACTTAAAACTGACAATATATCCCGATGGAGGGATCTCACGAGTGCGCGCC
CGAGGGACCAAAGTGGAAGTATAAGTCAATGACACCGGCTTTGCCGTACT
AAAAACAATTGAACGTGCGTTCCTGGTAGGGGAGGGACGGACAAGGAGAG
GGAGCGTCACAGGGAAGGGTTGTGTGGCATGGGGAAGACCTCGATGCGCA
GGAGGCCCATGTCAGGCGCCAACGGGCCCAAAAGAAGGAGTGCACGAAAG
TTGTGATTCGAAAGGGATGTGGCTGTTGGAGAATGGTAGTTGGATGTTAA
AGAGGACCGCGGGGGGAACGCAATGCTAGCGGGCATCGGGTTCCCCGAGA
AAGGCAAGTTCAAAGGGATGGACGCTTCGATGCGGTAGATGATAAATGTG
CTTGCTGCACTTGATATCATGTCTTTTGTGATCGTTCATTCATGTGGCAT
CCATTCATACAAAGCATCTGTGAACTAATTATTAACCCTCTCCAATTCGT
CATATTCCTCATCAATCCAAGCCTTCGAGGCCCCGATGCGTAAGACGCTG
TAAACCCTCACAGGTGTACAACGAGCAGGGGAACGTCGTTGCATATATAC
AAGGAAAAAGTGAAACAATGTTTTTCCTCTCACGACCCTCAGCCGATCCT
AATAATGAATACCTGAACCATCTGAATATTACTCTCTTATACAAGCGATG
TCTCGAGCTTTTCTTCGCGAGGTATCAAGGCTAGCCTGGCCGTCCTGAAA
AATGCTTTCTGGACCTCACTCT

Coding sequence (CDS) from alignment at CM002462.1:1000503..1002874-

>rna4156 ID=rna4156|Name=rna4156|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002462.1:1000503..1002874- (Nannochloropsis gaditana)
ATGGCTGATCGACCCATGCAACAGAGTCATACGACTGCCCTGCCCGATTT
TGTCGAAGAAACGGACCTGGCTTTAAGTCGTTTTGGTGGCAGAATATGCT
TTGCAACCGACGATTGGTTTGCTGCCGCAGAGAATTTACTCGATCACGAG
GAACCGATTTTTATCCCAGATAAATTCACAGCCTACGGAAAATGGATGGA
TGGGTGGGAGACACGGCGAAAACGTACAGCAGGTCACGATTGGTGTATTA
TCAAATTGGCTTTCCCCGGTCGCATTTTGGGCGTGGGTGTGGACACCTCC
TTCTTCACAGGCAACTACGTGCCTCGCTGCTCTATCCAAGCTGCCTCATA
CATTGATGACAACGAACCCATCGCCCTTCAAAAACTGGCTGCAGCACGCA
CTGAGGTTCCAGGTGGAGATAAAATAGGCAGCAAGGCCTCTGAGGAGGAG
ATGACCTTAGCAGCGAGCGTCCATTCGGATAGTTGGGAAACCATTTTACC
CTTCACCCCCTTGGGTGCCGGTTACAAAGATACGTGCCACAACTATTTTG
CCATTGAAGCCACAGAGCGCTTCACCCACCTGCGCCTGAACATGTTTCCC
GACGGCGGCATCGCGCGTCTGCGTGTGTACGGAATCGTCGCCCGAGCCTG
GCATTTGGTCCCGGCCACCCAGGTCGTGGATCTGGCAGCCGTTGAGAATG
GCGGAAAGGCCATCGGATGCAGTGACAAGCACTATGGCCACCCTCGGAAC
TTGATCAACCCGGGGCGTGGGATCAACATGGGGGACGGTTGGGAGACCGC
TCGGAAGTTGACCCGGCCTCCCGTGCTCGAGCCTGACGAAGGAGGACTTA
TCAAGGTACCCGGAAGTGATTGGGCCGTTTTACGCTTGGGAACGCCTGGG
AAGGTCCGAGAGCTTGAAATTGACACGTGTTGGTTCAAGGGGAATTACCC
TGAAAGCTGTCAGGTGGAGGCAGTCGAGTTGCCCCTGGACATGTCGAATG
AGGACGTGCACAAGGCGCAAGAGCTAGGGGAAGTGCCTTGGCGCATCTTG
CTGCCTAGAACAAAGTTGGGAGCAGATCAACAGGCTTACTTTGATGTGGG
GGCGGAGGGAGGACGGGCGGAAGCGGGGGGGGCGGTGACGCACTTAAAAC
TGACAATATATCCCGATGGAGGGATCTCACGAGTGCGCGCCCGAGGGACC
AAAGTGGAAGTATAA

Synonyms

Publications