rna4152, rna4152 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4152
Unique Name	rna4152
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1317
Alignment location	CM002462.1:989442..992040 -

Link to JBrowse

Properties


Property Name	Value
Product	poly polymerase gamma
Orig transcript id	gnl\|cribi\|Naga_100141g10.8380.mrna
Orig protein id	gnl\|cribi\|Naga_100141g10.8380
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:989442..992040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g10	gene3996	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26533.1	cds4142	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4152	rna4152-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:989442..992040-
coding sequence from alignment at CM002462.1:989442..992040-

mRNA sequence

>rna4152 ID=rna4152|Name=rna4152|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp
CCAGCTATTCAGCACTCGGACGCCACTGATTTTTATTCCACCACTCTTAC
TCCTAGATTGCCACGAAATTACTTACAAGGACTGGGTGGGGTATAGCCTT
TGAGCCAGGTGATACGATGGCGGACGTAACGGAGGAAGAGAACCCCACAG
CCACGGAGCCGACCGAGGGCGATGACGACGTAGATGCGGGCCTTTTCGAC
GGCAAAAAGAAGAAGAAGAAGAAGACCAAAGAAGGAGGAGAGGAGTCGGG
GGCAAGCGCCGATTTGGACGCTGTGTTTGCGGTCAAAAAGAAGAAGAGCA
GCAAGAAGGAGAAGAAGGAAACAGAGGATGGGGAGGATAACGGAGGGGAT
GATTTGTTGGACGAGATGTTTGCAAGTAAAAAAAAGAAGAGCAGCAAGAA
AGAGAAGAAGGAGAAGGAGGATGACGGGGGGGGGGAGGACGCAGGGGGGG
CCGGGGGCGACGAGGTGGATTTGGACGCGGCGTTTGCCGGAAGCAAGAAG
AAGAAGCGGAGCAAGCGGAAAGACGAAGGGGCTGAGGCGGGGAATGCCGT
TTACGACTCGAACGAGGCGAACTACAGCTACGACGAATTGTTGGAACGGA
TGCAAACGTTGCTGCAAGACGGCGACCCGACCAAATCCGTCACGTCCGGG
CGCGTGCCCATCAAAATGCCGCCCATCACTCTGGTCCGCATTGGCACGAA
GAAAACCCGGTGGGACAATTTCCACGACATTTGCAAGTGCATGAACCGGA
CCTTGGAGCACGTCTTTCAGTTCTTGGTGGCCGAGTTGGGCACGGAGGGC
TCCATCGACGGGAACAATCGGCTGGTTTTGCGGGGAAAGTACATCCCTAA
GGGCATCGAGTCCTTGCTAAGGAAATACATTGGCGAGTACGTGGCGTGCA
GCACCTGCAAGAGCCCCAACACCTCCCTCTCCCGGGACAGCGTTTCGCGC
CTTTTTTTCGTCCACTGCCAATCCTGCGGTTCCTCCCGCTCCGTCGCCCC
GATTCGAACCGGTTTCCATGCACAGACACGGGCAGATCGACGGGCATTGC
GAAAGTAAAAATGGGCGGGGAGCATACCGCGGGGGGTATCATGGAGGTGG
GGGGAAGGGAGAGGGAAAGGGTCAGGGGGAAAGCATAAGCAAGACTCAGG
TGTAATACAGGCATGTGTGGGGGAATGGCAAAGGACGAAGGCCGTGAGGG
AAAGGTGGAGGTCAGGGGGGGGGGGGGCTCCAGGACCCTCGGGGCTCGTC
AATGGCGTGGCCAAGGGAAGGAGAAGAGAGGTTTTGAAAACAGCGTGGTA
CGGCTGGCGCGAAGCTC

protein sequence of rna4152

>rna4152-protein ID=rna4152-protein|Name=rna4152|organism=Nannochloropsis gaditana|type=polypeptide|length=808bp
MSTAGQPLKRAVLEQLLPVVSNDAGDPKTAASLQTFVSAHIPMESEREQR
RRRDKVLELRSLFLDWIKATCHAKNLPEEVVAVAGGEVYIMGSYKLNVHE
PGADIDLCCVVPVHISREDFFTSFHDTLRQHPKVKDLASAASAHVPIMSF
ALDGVDFDVLFAQLPLTSVKAGMSVDEDLILRGVDAKTYLSLNGPRTTNM
ITRLVPASAQASFLTVLRVVRIWAKNRGLYANKMGYLGGVNFNILVAMIC
QMYPRANPALMLHRFFLVLGERWKWPTPVRLCKNFDAGLGFPVWEQGGSS
RRELMPIITPAYPAGNSAYNVSAQTLSVMKTEFARGKKVLDKALAMASLT
PGDEVGNNAAQAAWRELIEPSDFFIRYNRYLAVDMWASTAEGEAAWFGLV
ESRLRLLVDILDREPREIYGLGPIFKSVHLFPRAFPPCHRGGHDGGSEAW
HAAQCFYIGLSFDKEEMERRKVGKEVFVGEFIRKWRFAVETPPRGGQMRS
MRPRGCDVLVSEVKWRELPANVFESLGGEKLARERRRKERGKGKEGRKKG
QKRAREEEGEEEGEEEGKAGMEKRRGEEGEAGEGEEDETEGFTPLHMAAY
TGELESVKALTREEEEGGKEEGRKGGREGLVAVKGVDALDAQGRTPAQVA
RERGFDEVAMYLEGLMAAKGEGGREGGAGSGAEEERRVVPTQFLPPLDGN
AEYDDADDEVLGAAEAAMEQAMEAEEGGEGEEKRQEGEEEEEASRKKAAL
MSLQLVMKEEELKLDPVIPPWRKRSLVLSSGGGGERTRALIRTPVVMDLT
LEEGEGKV

mRNA from alignment at CM002462.1:989442..992040-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4152 ID=rna4152|Name=rna4152|organism=Nannochloropsis gaditana|type=mRNA|length=2599bp|location=Sequence derived from alignment at CM002462.1:989442..992040- (Nannochloropsis gaditana)
CACACAGGGAGAGATCCCGACCAGGCAGTAGGCAATGAGCACGGCGGGGC
AGCCTCTGAAACGGGCCGTGCTCGAACAACTGCTACCGGTAGTGAGCAAT
GACGCCGGCGACCCGAAAACAGCGGCAAGTTTGCAAACATTTGTGTCCGC
CCACATTCCCATGGAGTCGGAACGCGAGCAACGCCGGCGCCGCGACAAGG
TCCTGGAACTCCGCAGTTTGTTTCTCGACTGGATCAAAGCGACCTGCCAT
GCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGGCTGGGGGTGAGGTTTA
CATTATGGGTAGCTACAAATTAAATGTGCATGAACCTGGCGCAGATATTG
ACCTGTGCTGCGTCGTTCCTGTCCACATATCACGGGAGGACTTCTTCACA
TCCTTCCATGACACCCTCCGGCAGCATCCGAAGGTCAAGGACCTGGCTTC
TGCTGCCAGCGCCCACGTCCCTATCATGAGCTTTGCTTTGGACGGCGTGG
ATTTCGACGTGCTATTCGCCCAGCTCCCCCTGACCTCGGTCAAGGCCGGG
ATGAGCGTGGACGAGGACCTGATCCTTCGTGGGGTCGACGCCAAGACCTA
CCTCTCCCTGAATGGCCCCAGGACCACCAACATGATCACGCGCCTCGTGC
CCGCCTCCGCCCAAGCCTCCTTCCTCACCGTGCTCCGGGTCGTCCGAATA
TGGGCCAAGAACCGGGGGCTGTACGCGAACAAGATGGGCTACTTGGGGGG
CGTCAATTTCAACATTCTGGTGGCGATGATCTGTCAGATGTACCCCCGAG
CGAACCCCGCCCTGATGCTCCACCGTTTCTTCTTGGTGTTGGGGGAACGC
TGGAAGTGGCCGACGCCCGTCCGTCTCTGCAAAAATTTCGACGCCGGCCT
GGGTTTCCCTGTGTGGGAACAAGGCGGATCCTCGCGGCGGGAGCTGATGC
CGATCATCACGCCGGCGTACCCAGCCGGGAACAGTGCCTATAACGTCTCG
GCGCAAACCTTGTCGGTGATGAAAACGGAGTTTGCCCGGGGAAAGAAAGT
GCTGGACAAGGCGTTGGCCATGGCATCCTTGACGCCAGGCGACGAGGTCG
GGAACAACGCGGCGCAAGCTGCCTGGCGGGAACTGATTGAACCGTCGGAT
TTCTTCATCCGTTACAACCGTTACTTGGCCGTTGACATGTGGGCGTCGAC
GGCCGAAGGGGAAGCCGCGTGGTTCGGCTTGGTCGAGTCGCGCCTGCGCC
TGCTGGTGGATATCCTGGATCGGGAGCCTCGGGAGATCTACGGCCTGGGG
CCGATTTTCAAATCCGTGCACCTCTTTCCCCGCGCCTTTCCCCCCTGCCA
CAGGGGGGGCCACGACGGCGGGTCAGAGGCCTGGCATGCCGCCCAGTGTT
TTTACATCGGCTTGTCCTTCGACAAGGAAGAGATGGAGCGGCGCAAGGTG
GGGAAAGAGGTGTTTGTGGGCGAGTTTATACGGAAATGGCGATTTGCCGT
GGAGACCCCGCCCCGGGGAGGGCAGATGAGAAGCATGCGACCTCGGGGAT
GCGACGTCCTGGTCAGCGAGGTAAAATGGCGCGAACTCCCCGCCAATGTC
TTTGAGAGCCTGGGGGGCGAGAAATTGGCGCGGGAGAGGAGGAGGAAAGA
GCGGGGGAAAGGGAAGGAGGGCCGGAAGAAGGGGCAGAAACGGGCGCGGG
AGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGCAAGGCAGGGATGGAA
AAAAGGAGAGGGGAGGAGGGCGAGGCCGGGGAGGGGGAGGAGGATGAAAC
CGAAGGGTTCACTCCTCTGCACATGGCGGCGTACACGGGGGAGTTGGAGT
CGGTCAAGGCGTTGACGAGGGAGGAAGAGGAGGGGGGAAAGGAGGAAGGG
AGGAAGGGAGGGAGGGAGGGTTTGGTGGCGGTGAAAGGGGTGGATGCCTT
GGATGCACAGGGGCGGACGCCGGCGCAGGTGGCCCGCGAGAGAGGCTTCG
ACGAAGTAGCGATGTATCTGGAAGGATTGATGGCGGCGAAGGGGGAGGGA
GGGCGGGAAGGAGGGGCAGGGAGCGGGGCGGAGGAGGAGAGAAGGGTGGT
CCCAACCCAATTCTTGCCCCCCTTGGACGGCAACGCCGAGTACGATGACG
CGGACGACGAGGTGTTGGGCGCTGCGGAAGCAGCCATGGAACAGGCGATG
GAAGCGGAAGAAGGGGGGGAGGGGGAGGAGAAGCGGCAAGAGGGGGAAGA
GGAGGAGGAAGCTAGCCGGAAGAAGGCAGCATTGATGAGCCTGCAGCTAG
TCATGAAGGAGGAAGAGTTGAAGTTGGATCCAGTCATCCCCCCTTGGCGG
AAGCGAAGCTTGGTCCTGTCGAGTGGTGGTGGGGGGGAAAGGACTCGGGC
CCTGATTCGGACACCGGTGGTGATGGATTTGACCTTGGAGGAGGGCGAAG
GGAAGGTGTGAGGGAAGGCGGGAAGGAGGGGAAGGTGTCAGGGGGGGCGG
AGACGTGCCATGCGGTCAGAAGAGCGCACCTCGTCGTACAAATGTGACAC
ATAAGTCAACATTACACGGAAAAAGAAAACAAAAGAAAACCACGAAAGA

Coding sequence (CDS) from alignment at CM002462.1:989442..992040-

>rna4152 ID=rna4152|Name=rna4152|organism=Nannochloropsis gaditana|type=CDS|length=2427bp|location=Sequence derived from alignment at CM002462.1:989442..992040- (Nannochloropsis gaditana)
ATGAGCACGGCGGGGCAGCCTCTGAAACGGGCCGTGCTCGAACAACTGCT
ACCGGTAGTGAGCAATGACGCCGGCGACCCGAAAACAGCGGCAAGTTTGC
AAACATTTGTGTCCGCCCACATTCCCATGGAGTCGGAACGCGAGCAACGC
CGGCGCCGCGACAAGGTCCTGGAACTCCGCAGTTTGTTTCTCGACTGGAT
CAAAGCGACCTGCCATGCCAAAAACTTGCCAGAGGAAGTGGTGGCGGTGG
CTGGGGGTGAGGTTTACATTATGGGTAGCTACAAATTAAATGTGCATGAA
CCTGGCGCAGATATTGACCTGTGCTGCGTCGTTCCTGTCCACATATCACG
GGAGGACTTCTTCACATCCTTCCATGACACCCTCCGGCAGCATCCGAAGG
TCAAGGACCTGGCTTCTGCTGCCAGCGCCCACGTCCCTATCATGAGCTTT
GCTTTGGACGGCGTGGATTTCGACGTGCTATTCGCCCAGCTCCCCCTGAC
CTCGGTCAAGGCCGGGATGAGCGTGGACGAGGACCTGATCCTTCGTGGGG
TCGACGCCAAGACCTACCTCTCCCTGAATGGCCCCAGGACCACCAACATG
ATCACGCGCCTCGTGCCCGCCTCCGCCCAAGCCTCCTTCCTCACCGTGCT
CCGGGTCGTCCGAATATGGGCCAAGAACCGGGGGCTGTACGCGAACAAGA
TGGGCTACTTGGGGGGCGTCAATTTCAACATTCTGGTGGCGATGATCTGT
CAGATGTACCCCCGAGCGAACCCCGCCCTGATGCTCCACCGTTTCTTCTT
GGTGTTGGGGGAACGCTGGAAGTGGCCGACGCCCGTCCGTCTCTGCAAAA
ATTTCGACGCCGGCCTGGGTTTCCCTGTGTGGGAACAAGGCGGATCCTCG
CGGCGGGAGCTGATGCCGATCATCACGCCGGCGTACCCAGCCGGGAACAG
TGCCTATAACGTCTCGGCGCAAACCTTGTCGGTGATGAAAACGGAGTTTG
CCCGGGGAAAGAAAGTGCTGGACAAGGCGTTGGCCATGGCATCCTTGACG
CCAGGCGACGAGGTCGGGAACAACGCGGCGCAAGCTGCCTGGCGGGAACT
GATTGAACCGTCGGATTTCTTCATCCGTTACAACCGTTACTTGGCCGTTG
ACATGTGGGCGTCGACGGCCGAAGGGGAAGCCGCGTGGTTCGGCTTGGTC
GAGTCGCGCCTGCGCCTGCTGGTGGATATCCTGGATCGGGAGCCTCGGGA
GATCTACGGCCTGGGGCCGATTTTCAAATCCGTGCACCTCTTTCCCCGCG
CCTTTCCCCCCTGCCACAGGGGGGGCCACGACGGCGGGTCAGAGGCCTGG
CATGCCGCCCAGTGTTTTTACATCGGCTTGTCCTTCGACAAGGAAGAGAT
GGAGCGGCGCAAGGTGGGGAAAGAGGTGTTTGTGGGCGAGTTTATACGGA
AATGGCGATTTGCCGTGGAGACCCCGCCCCGGGGAGGGCAGATGAGAAGC
ATGCGACCTCGGGGATGCGACGTCCTGGTCAGCGAGGTAAAATGGCGCGA
ACTCCCCGCCAATGTCTTTGAGAGCCTGGGGGGCGAGAAATTGGCGCGGG
AGAGGAGGAGGAAAGAGCGGGGGAAAGGGAAGGAGGGCCGGAAGAAGGGG
CAGAAACGGGCGCGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGG
CAAGGCAGGGATGGAAAAAAGGAGAGGGGAGGAGGGCGAGGCCGGGGAGG
GGGAGGAGGATGAAACCGAAGGGTTCACTCCTCTGCACATGGCGGCGTAC
ACGGGGGAGTTGGAGTCGGTCAAGGCGTTGACGAGGGAGGAAGAGGAGGG
GGGAAAGGAGGAAGGGAGGAAGGGAGGGAGGGAGGGTTTGGTGGCGGTGA
AAGGGGTGGATGCCTTGGATGCACAGGGGCGGACGCCGGCGCAGGTGGCC
CGCGAGAGAGGCTTCGACGAAGTAGCGATGTATCTGGAAGGATTGATGGC
GGCGAAGGGGGAGGGAGGGCGGGAAGGAGGGGCAGGGAGCGGGGCGGAGG
AGGAGAGAAGGGTGGTCCCAACCCAATTCTTGCCCCCCTTGGACGGCAAC
GCCGAGTACGATGACGCGGACGACGAGGTGTTGGGCGCTGCGGAAGCAGC
CATGGAACAGGCGATGGAAGCGGAAGAAGGGGGGGAGGGGGAGGAGAAGC
GGCAAGAGGGGGAAGAGGAGGAGGAAGCTAGCCGGAAGAAGGCAGCATTG
ATGAGCCTGCAGCTAGTCATGAAGGAGGAAGAGTTGAAGTTGGATCCAGT
CATCCCCCCTTGGCGGAAGCGAAGCTTGGTCCTGTCGAGTGGTGGTGGGG
GGGAAAGGACTCGGGCCCTGATTCGGACACCGGTGGTGATGGATTTGACC
TTGGAGGAGGGCGAAGGGAAGGTGTGA

Synonyms

Publications