rna4148, rna4148 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4148
Unique Name	rna4148
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2329
Alignment location	CM002462.1:982172..983537 +

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin family protein
Orig transcript id	gnl\|cribi\|Naga_100141g14.8377.mrna
Orig protein id	gnl\|cribi\|Naga_100141g14.8377
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:982172..983537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g14	gene3992	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4148	rna4148-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26530.1	cds4138	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:982172..983537+
coding sequence from alignment at CM002462.1:982172..983537+

mRNA sequence

>rna4148 ID=rna4148|Name=rna4148|organism=Nannochloropsis gaditana|type=mRNA|length=2329bp
GGACCAGTCGTGTTCCTATTGCCATTAAGCACGTTGTACTTCGATGCCAG
CCCAGGACAAACCAAGAAGCAAAAAATGCGAAGAAGTTGAGGCCCTCATG
CGCTTAATATGTATATATTGAAGGTGTGACATGCCTTTTGGGACCGTTGC
AGGGAAAAAAAGACCATGCAAGAAAAACCTACCCGAATCCTCTCGCAACG
GTGATGGGGGTGGTAAAGAACAAGTAGGAGCACAGAGGTCCCACGAAAAT
GTGCACACCACGGTGCAGTGGATGCAACATGTGCACCACTATTGGAATGT
CTCTATGAGAGGAAAAATAAAGCCTGTATTGCTCATGCCAGCTTTTTGAT
CTACCTAACCCTCATGACAATAAAGCCTAACGCAGCTTCTCCGTCAGCTC
TGTTCTGGACCAATTTGCTTCGTTTTCACCGGCCCCACCGAATACAGAGA
TAGTGTTGTCCCTGCGTAAAATATCCATGGATAACCTGAAGCACGACCGC
AGTGATTAAATTCGTCGAGAAAAGTGCTGTCATTTTCCCCCAAACCCTGC
CCCGCAGAGAGACATCCGGCTTTCGACAAGGTCATCGTGTATTCGGTGTT
TCTGCTCGCCTTCAGGAATGTTCCTCTGTACCACGCCTCCATTCTACTTG
ACTGAGTGTTTCATTACTTGTTCTCATAAGTTAGCCGAGCGCACGCCGTG
GAATTTTGAGATAGTGGCCACGTATTTGTCACCTTTTTTCAATACACCTT
TTTCAATACACCTCATCAACATTTGGTGATATGACGCATGTGATGCTTTC
TTCACTACATTGGCCATTGGATGACTAAATGATAAAGGGCATTGTTATTG
TAGCAACTATTATTCCATCACAATGTAATGCTAATTATCTATCGCATATT
TGCCAATACGGCTTCGAGGCACTGGCACACTAACCTCCCCTCAATCTGCC
GATTGCATTACCCTAACCTAGATCTTGCTTTCAATCGCAGAGCCCCTGGA
TTGACATTGCACCTGTAACACTAGTGCCAAACAATCTCAAGTATAACTAT
GCCGGGGTTAGACGTATTGGATCAAATGGGTAAGGAAGGGCAGCGCATCG
AGCCCTCGCAGGTAGACGCCGTCCTCCACCGCCCCCACCAGGTCACTTTC
TTCGGGAACCGCCTCTGTCCATACGCACACATTGCGTGGTGGAGTTTGTT
GGAGAAAAACGTGGCATTCGATTACGTGCACGTGGACTTGGGGCAGCAAA
AGCCGGAGTGGTACAAAGAGAAGGTGAACCCCTACGGCACGGTGCCGTCT
TTGTACGACGGAGACAAGGCTGTGTTTGAGAGCGTCATCATCGCCGAGTA
CGTGGAGGAAAAATTTGGAGCCGAAAAGGGAACCCGCTTGATGCCTGCCG
ACCCCGTGGATAGGGCGGCAGTGCGGTTGGTGATTGCACATTTCCGAGAG
AGGACTTTACCGCCCTTGTATAAATTGTTGAAAGCACAGACGCCGGCGGA
AGCAAACGTGGCCAAGGAGCTCATCCTCGTAGAAATGCTCGCCCTCGAAG
TCCTCTACAACAAGCACCACCCCCTCCACCCTGCCGCCGTTGCCTCCTCC
ACCCCTTCCCCGGGGCCTTTTCTGCTGGGAGGCCGCTTCTCTCTGGCGGA
AGTGGTCATATTCCCTTTCCTCGACCGCCTCTCAGTCGCTCTGCAGCATT
ACCGGGGCTTCCACCCCCTCCGGTCCACCCACCTCCCCCGCCTCCAAGCT
GCCTACGAGGTGGTGCAAGAAAGGGCAGCGTGGAAGGCGAGCACCCAACC
TCCCGCTTTCTACATCGCCGTGTACGAAGCCTACGCCAGCCCGCCGTCCC
CTGCCGCGGTGAGGGAGGAGGAGAAGCGAAGAGGGGGCTGGCTGTGGCGG
GCGGCATCGTTGGTGGGGGCCGTGAATGCGGCGGTGCCCTTGTTGGGACT
GGTGTCGTTTGCCTCGCTGCTGGTCGGCGTGGGGGTGGGTAGGTACCAAG
GCTGGGGGCCACACAGTGCCCGCACAGGGGGGCGCTAGAAACCGCGCGGA
AGGCGGGCAGGGAGGCGGAGCCCAGTGGTGGAGGGAAGAAGAGCAGGGGA
TGGGGTGAGGGCGGTGGTGGGGGAATGGAACAGGAGGGATGGAATGCATG
CATGGATGTGTACAAAGTGCTCTTGTGAGGTATTGAATGGTGGAAGGGAA
GGGGGAAGGGAGGGCAGGGCATGGGAATGATGTAGAGAGAGCATGGAATC
AGATTCGTAGGGTCGGTTGAAAACCATGGGATTCCGTTAAACAGAAAAGT
CGGAAGCGATGGTTTCGGGCACGGTAGTT

protein sequence of rna4148

>rna4148-protein ID=rna4148-protein|Name=rna4148|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MRHFLAITAPIVLLVQMTMAFRPTARSRVQMLWGSQTKKPVTIGGPINEP
KPFSVRPDKFLDVATASAVSLLRGGSGAFVQGYKVELVGTEEVDAGDYTF
VSVGGKRSKETCAAFVGRPKQPIILYEFQGCPFCAKVREAVSILDLDVLF
YPCPKDGKKFRPAAVARGGKSQFPYMVDPNTKVEMYESGDIIQYLVDNYG
TGETPAGLGAGYANVVKIGLALAPRIGKGSKVVAGGSNIPQKPLIYWGYE
ASPFCRLVKEKLNELELPHVQKSCARGSSKRRELQARAGKFLVPFIEDPN
TGVSMFESAEIMEYLTKTYAV

mRNA from alignment at CM002462.1:982172..983537+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4148 ID=rna4148|Name=rna4148|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp|location=Sequence derived from alignment at CM002462.1:982172..983537+ (Nannochloropsis gaditana)
CGTACTCATCGACCACGAACGCCTCCAAACTATGCACAAAAAAGGTTGAC
GATGCGTCACTTTCTGGCAATTACGGCGCCAATCGTACTTCTTGTCCAGA
TGACCATGGCTTTCCGACCGACTGCACGGTCTCGCGTGCAAATGCTGTGG
GGGAGTCAAACCAAGAAGCCTGTTACCATCGGGGGTCCCATCAACGAACC
AAAGCCTTTTTCTGTCCGCCCAGACAAATTCTTGGACGTCGCCACGGCAA
GCGCAGTCAGCTTATTGCGTGGTGGATCCGGTGCTTTTGTGCAAGGCTAC
AAAGTCGAGCTGgtggggacagaggaggtggacgcggGGGACTACACTTT
TGTCTCAGTGGGCGGCAAGCGGAGCAAGGAGACCTGTGCGGCTTTTGTGG
GCCGACCCAAGCAACCCATCATTCTTTACGAATTTCAGGGATGCCCCTTT
TGTGCCAAAGTTCGGGAGGCTGTCAGCATTCTAGATCTGGACGTATTGTT
CTATCCTTGCCCGAAAGATGGGAAGAAGTTCCGCCCCGCTGCCGTCGCCc
gcggagggaaaagccagTTTCCTTACATGGTGGATCCAAACACCAAAGTG
GTAAGATAGATTCATTATCATATGTTTATGCCTGAGAAAGATTCATGTCG
TCccagggatgggggggagctTTCCTTGTCTTGATAGGCTGGTGACCGTG
AGGAtccggaggaggtggtgatggagggagagagggaagaccaaaataaa
aatggcgcgaaaaagtCCCAAAGCGATGTTTTGGAAAGATGTTGGCCATG
AAAAGATTTCTGAGgaatttccttcctccccttttctcccagGAAATGTA
CGAGTCGGGTGACATAATCCAGTATTTGGTCGATAACTATGGCACGGGAG
AGACGCCCGCCGGCCTAGGCGCCGGGTATGCAAACGTGGTGAAGATTGGA
CTCGCCCTGGCCCCGCGCAttgggaaggggagcaagGTCGTGGCAGGTGG
GAGCAACATTCCGCAGAAACCCTTGATTTATTGGGGGTACGAGgcctctc
ctttctgccGACTGGTCAAGGAGAAATTGAACGAGCTGGAGCTGCCCCAC
GTGCAAAAGTCCTGCGCGAGGGGGAGCAGCAAGCGCAGGGAGCTGCAAGC
GCGTGCTGGGAAATTTTTGGTGCCCTTCATCGAGGACCCCAACACGGGTG
TGAGCATGTTTGAGAGCGCGGAGATCATGGAATACCTGACCAAGACCTAC
GCTGtttgaggggaaaagggaaaggggggagaggaaaggtaTAGGCGTAG
AGAGAATGTTTTTGACTGGCGGGATGGGGACTGGCATCGAGAAAGCAACA
AGTGCTGtgcaagagg

Coding sequence (CDS) from alignment at CM002462.1:982172..983537+

>rna4148 ID=rna4148|Name=rna4148|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002462.1:982172..983537+ (Nannochloropsis gaditana)
ATGCGTCACTTTCTGGCAATTACGGCGCCAATCGTACTTCTTGTCCAGAT
GACCATGGCTTTCCGACCGACTGCACGGTCTCGCGTGCAAATGCTGTGGG
GGAGTCAAACCAAGAAGCCTGTTACCATCGGGGGTCCCATCAACGAACCA
AAGCCTTTTTCTGTCCGCCCAGACAAATTCTTGGACGTCGCCACGGCAAG
CGCAGTCAGCTTATTGCGTGGTGGATCCGGTGCTTTTGTGCAAGGCTACA
AAGTCGAGCTGgtggggacagaggaggtggacgcggGGGACTACACTTTT
GTCTCAGTGGGCGGCAAGCGGAGCAAGGAGACCTGTGCGGCTTTTGTGGG
CCGACCCAAGCAACCCATCATTCTTTACGAATTTCAGGGATGCCCCTTTT
GTGCCAAAGTTCGGGAGGCTGTCAGCATTCTAGATCTGGACGTATTGTTC
TATCCTTGCCCGAAAGATGGGAAGAAGTTCCGCCCCGCTGCCGTCGCCcg
cggagggaaaagccagTTTCCTTACATGGTGGATCCAAACACCAAAGTGG
AAATGTACGAGTCGGGTGACATAATCCAGTATTTGGTCGATAACTATGGC
ACGGGAGAGACGCCCGCCGGCCTAGGCGCCGGGTATGCAAACGTGGTGAA
GATTGGACTCGCCCTGGCCCCGCGCAttgggaaggggagcaagGTCGTGG
CAGGTGGGAGCAACATTCCGCAGAAACCCTTGATTTATTGGGGGTACGAG
gcctctcctttctgccGACTGGTCAAGGAGAAATTGAACGAGCTGGAGCT
GCCCCACGTGCAAAAGTCCTGCGCGAGGGGGAGCAGCAAGCGCAGGGAGC
TGCAAGCGCGTGCTGGGAAATTTTTGGTGCCCTTCATCGAGGACCCCAAC
ACGGGTGTGAGCATGTTTGAGAGCGCGGAGATCATGGAATACCTGACCAA
GACCTACGCTGtttgaATGCGTCACTTTCTGGCAATTACGGCGCCAATCG
TACTTCTTGTCCAGATGACCATGGCTTTCCGACCGACTGCACGGTCTCGC
GTGCAAATGCTGTGGGGGAGTCAAACCAAGAAGCCTGTTACCATCGGGGG
TCCCATCAACGAACCAAAGCCTTTTTCTGTCCGCCCAGACAAATTCTTGG
ACGTCGCCACGGCAAGCGCAGTCAGCTTATTGCGTGGTGGATCCGGTGCT
TTTGTGCAAGGCTACAAAGTCGAGCTGgtggggacagaggaggtggacgc
ggGGGACTACACTTTTGTCTCAGTGGGCGGCAAGCGGAGCAAGGAGACCT
GTGCGGCTTTTGTGGGCCGACCCAAGCAACCCATCATTCTTTACGAATTT
CAGGGATGCCCCTTTTGTGCCAAAGTTCGGGAGGCTGTCAGCATTCTAGA
TCTGGACGTATTGTTCTATCCTTGCCCGAAAGATGGGAAGAAGTTCCGCC
CCGCTGCCGTCGCCcgcggagggaaaagccagTTTCCTTACATGGTGGAT
CCAAACACCAAAGTGGAAATGTACGAGTCGGGTGACATAATCCAGTATTT
GGTCGATAACTATGGCACGGGAGAGACGCCCGCCGGCCTAGGCGCCGGGT
ATGCAAACGTGGTGAAGATTGGACTCGCCCTGGCCCCGCGCAttgggaag
gggagcaagGTCGTGGCAGGTGGGAGCAACATTCCGCAGAAACCCTTGAT
TTATTGGGGGTACGAGgcctctcctttctgccGACTGGTCAAGGAGAAAT
TGAACGAGCTGGAGCTGCCCCACGTGCAAAAGTCCTGCGCGAGGGGGAGC
AGCAAGCGCAGGGAGCTGCAAGCGCGTGCTGGGAAATTTTTGGTGCCCTT
CATCGAGGACCCCAACACGGGTGTGAGCATGTTTGAGAGCGCGGAGATCA
TGGAATACCTGACCAAGACCTACGCTGtttga

Synonyms

Publications