rna4147, rna4147 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4147
Unique Name	rna4147
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1672
Alignment location	CM002462.1:979500..981965 -

Link to JBrowse

Properties


Property Name	Value
Product	glutathione s-transferase
Orig transcript id	gnl\|cribi\|Naga_100141g16.8378.mrna
Orig protein id	gnl\|cribi\|Naga_100141g16.8378
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:979500..981965 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g16	gene3991	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4147	rna4147-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26531.1	cds4137	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:979500..981965-
coding sequence from alignment at CM002462.1:979500..981965-

mRNA sequence

>rna4147 ID=rna4147|Name=rna4147|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp
TCATCCAAAAATGGCAGCAGGGCCTGTCGGGGGGTACAAAAGAATATGAA
TGAAAGCCGAATGATGAGTGGGCAATGCACAAATTGTCGGTGACGGGTGT
AAATTAAGTGTGTTTTTAAAAGTTCGCCGTCCCGTCATTCAACTAAACTT
GAGTTCAGCGACAGGAACGGGGCCGATATGGGGGAGGAAATGCTACTCAA
CCCTAATGAAAAATGAGAAGCTTTTGTGAAAACACCGACGACACATACTT
CTCAAAGCAGAATACAGAATGTACAAAGCGCCACGGTGGCAGAAAGTGGC
GTGTCTGGCGAGGGGGGGGGGAGTCAAGTCGAAGCTGTGCAATCCGACTT
GACGTTGGCCTAGTGCATTTTTTTTTGCAGGGAACAAACGCATTGAAGCC
TCAAGCCTGCCACTGGGGATGGGAGACGATGTGTGATGGACAGGTCACAA
TATGAGGATGAAGGGGAGGATCAACAATTCAAGCTGCCCTCCTCCGCACA
TTTCGGAAGCGAGCATGGGAATATGAAGACACGACCCAACTTGCACGCTA
TCGAAACAGAGTGGCGCGCCGACCAAGAGCGGCGCCGAATTGCCATTTTA
GAAGTAGACACTTTCGACAGGGCGAGCCTCACGCGGGTGGGGGGGTTGGA
TTTGAGTTTCTTCCCAAGCAGCCACGGGCACGAGAGAGAGGAGGCAGTGG
CCTGTTTCGTGGTTCTATCCTATCCGAGCCTGGAGGTTCTGCATGAAAGC
TATCTGCCGACAACCCTGACAATCCCGTACGTGGCCGGATTCCTGGCCTA
CCGAGAAGGCCCCCCCATGGCGCAGCTGGTGGAGGAATTGCGACGAACAC
AACCCACCTTGATGCCTCAGGTTCTGATGGTGGATGGGAATGGCATACTG
CACCCGCGGGGTTGTGGGCTCGCTAGCCACGTGGGGCTTCTGACAGGGAT
CCCGAGCATTGGATGTGCCAAGACGTTCTTGCACGTGGAGGGACTGGAGA
CGCTCGCGGTTCGAAAGGCGTTGCAGGAGCAAGGCCACAGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGACAAAAGGGCAGGACCT
TGTCGGCGGCCCAGGGAGAAGAGTGGAGAAGAGGGAGGCGGGAGGGGGTC
ACCGACTAGAGGAGCTGGAAACGAAGGGCAGCCGGACCCCAGAAGCCGAT
GTCGACAACGGAGAGGCAGGGGTTCGTCAGGAGGAAGTCTGCCCTGTGAA
TGCCTCCACCACCCATTTCCACCGCGCCCAGAGCCCCGGCAGGGTCTTCC
ACTTGGTCGGAAGGGCAGGGCGCGTGTGGGGTGCGGCTTTTTGCCCCTCG
GGGGTCTCCAACCCAATCTACGTGTCCGTAGGCACCGGCATCTCTCTCAC
CTCCGCCCTCAGCACTGTCGAGGCTTGTTGCAAGTATCGAGTCCCAGAGC
CCGTGCGACAGGCGGACATACGGTCCCGGGCGTGGGTACGGACGTGGGAA
GGCGGGAGGGGGAAGGTCGAGGCGAAGGGGGGGGGGGACCCTCGTGGTAG
CAGTATGTAAGGGAGACGGAGAGACATGGCCTCGGGTGGTGGGCGAGGCA
ATAAAGAGGGGGAAGAGGCGGGTGCCAGGGAGCGAGGGGGATCGGTCAAG
CCAGCGAACCAATGTGTCCGGG

protein sequence of rna4147

>rna4147-protein ID=rna4147-protein|Name=rna4147|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MPGLDVLDQMGKEGQRIEPSQVDAVLHRPHQVTFFGNRLCPYAHIAWWSL
LEKNVAFDYVHVDLGQQKPEWYKEKVNPYGTVPSLYDGDKAVFESVIIAE
YVEEKFGAEKGTRLMPADPVDRAAVRLVIAHFRERTLPPLYKLLKAQTPA
EANVAKELILVEMLALEVLYNKHHPLHPAAVASSTPSPGPFLLGGRFSLA
EVVIFPFLDRLSVALQHYRGFHPLRSTHLPRLQAAYEVVQERAAWKASTQ
PPAFYIAVYEAYASPPSPAAVREEEKRRGGWLWRAASLVGAVNAAVPLLG
LVSFASLLVGVGVGRYQGWGPHSARTGGR

mRNA from alignment at CM002462.1:979500..981965-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4147 ID=rna4147|Name=rna4147|organism=Nannochloropsis gaditana|type=mRNA|length=2466bp|location=Sequence derived from alignment at CM002462.1:979500..981965- (Nannochloropsis gaditana)
GGACCAGTCGTGTTCCTATTGCCATTAAGCACGTTGTACTTCGATGCCAG
CCCAGGACAAACCAAGAAGCAAAAAATGCGAAGAAGTTGAGGCCCTCATG
CGCTTAATATGTATATATTGAAGGTGTGACATGCCTTTTGGGACCGTTGC
AGGGAAAAAAAGACCATGCAAGAAAAACCTACCCGAATCCTCTCGCAACG
GTGATGGGGGTGGTAAAGAACAAGTAGGAGCACAGAGGTCCCACGAAAAT
GTGCACACCACGGTGCAGTGGATGCAACATGTGCACCACTATTGGAATGT
CTCTATGAGAGGAAAAATAAAGCCTGTATTGCTCATGCCAGCTTTTTGAT
CTACCTAACCCTCATGACAATAAAGCCTAACGCAGCTTCTCCGTCAGCTC
TGTTCTGGACCAATTTGCTTCGTTTTCACCGGCCCCACCGAATACAGAGA
TAGTGTTGTCCCTGCGTAAAATATCCATGGATAACCTGAAGCACGACCGC
AGTGATTAAATTCGTCGAGAAAAGTGCTGTCATTTTCCCCCAAACCCTGC
CCCGCAGAGAGACATCCGGCTTTCGACAAGGTCATCGTGTATTCGGTGTT
TCTGCTCGCCTTCAGGAATGTTCCTCTGTACCACGCCTCCATTCTACTTG
ACTGAGTGTTTCATTACTTGTTCTCATAAGTTAGCCGAGCGCACGCCGTG
GAATTTTGAGATAGTGGCCACGTATTTGTCACCTTTTTTCAATACACCTT
TTTCAATACACCTCATCAACATTTGGTGATATGACGCATGTGATGCTTTC
TTCACTACATTGGCCATTGGATGACTAAATGATAAAGGGCATTGTTATTG
TAGCAACTATTATTCCATCACAATGTAATGCTAATTATCTATCGCATATT
TGCCAATACGGCTTCGAGGCACTGGCACACTAACCTCCCCTCAATCTGCC
GATTGCATTACCCTAACCTAGATCTTGCTTTCAATCGCAGAGCCCCTGGA
TTGACATTGCACCTGTAACACTAGTGCCAAACAATCTCAAGTATAACTAT
GCCGGGGTTAGACGTATTGGATCAAATGGGTAAGGAAGGGCAGCGCATCG
AGCCCTCGCAGGTAGACGCCGTCCTCCACCGCCCCCACCAGGTCACTTTC
TTCGGGAACCGCCTCTGTCCATACGCACACATTGCGTGGTGGAGTTTGTT
GGAGAAAAACGTGGCATTCGATTACGTGCACGTGGACTTGGGGCAGCAAA
AGCCGGAGTGGTACAAAGAGAAGGTGAACCCCTACGGCACGGTGCCGTCT
TTGTACGACGGAGACAAGGCTGTGTTTGAGAGCGTCATCATCGCCGAGTA
CGTGGAGGAAAAATTTGGAGCCGAAAAGGGAACCCGCTTGATGCCTGCCG
ACCCCGTGGATAGGGCGGCAGTGCGGTTGGTGATTGCACATTTCCGAGAG
AGGACTTTACCGCCCTTGTATAAATTGTTGAAAGCACAGACGCCGGCGGA
AGCAAACGTGGCCAAGGTAGGCCAAGGTCTTTTTGAAAGGCTGTCAGACG
CCTTGGATGCATCTTGTTAACCCTCCTGTGTTCCACACGACTGTCTGGCG
ACCAAGTCTCAAGCTTCCCCTGCCTCCCACTCCCCTTCCTCCCCTCCCTT
CAGGAGCTCATCCTCGTAGAAATGCTCGCCCTCGAAGTCCTCTACAACAA
GCACCACCCCCTCCACCCTGCCGCCGTTGCCTCCTCCACCCCTTCCCCGG
GGCCTTTTCTGCTGGGAGGCCGCTTCTCTCTGGCGGAAGTGGTCATATTC
CCTTTCCTCGACCGCCTCTCAGTCGCTCTGCAGCATTACCGGGGCTTCCA
CCCCCTCCGGTCCACCCACCTCCCCCGCCTCCAAGCTGCCTACGAGGTGG
TGCAAGAAAGGGCAGCGTGGAAGGCGAGCACCCAACCTCCCGCTTTCTAC
ATCGCCGTGTACGAAGCCTACGCCAGCCCGCCGTCCCCTGCCGCGGTGAG
GGAGGAGGAGAAGCGAAGAGGGGGCTGGCTGTGGCGGGCGGCATCGTTGG
TGGGGGCCGTGAATGCGGCGGTGCCCTTGTTGGGACTGGTGTCGTTTGCC
TCGCTGCTGGTCGGCGTGGGGGTGGGTAGGTACCAAGGCTGGGGGCCACA
CAGTGCCCGCACAGGGGGGCGCTAGAAACCGCGCGGAAGGCGGGCAGGGA
GGCGGAGCCCAGTGGTGGAGGGAAGAAGAGCAGGGGATGGGGTGAGGGCG
GTGGTGGGGGAATGGAACAGGAGGGATGGAATGCATGCATGGATGTGTAC
AAAGTGCTCTTGTGAGGTATTGAATGGTGGAAGGGAAGGGGGAAGGGAGG
GCAGGGCATGGGAATGATGTAGAGAGAGCATGGAATCAGATTCGTAGGGT
CGGTTGAAAACCATGGGATTCCGTTAAACAGAAAAGTCGGAAGCGATGGT
TTCGGGCACGGTAGTT

Coding sequence (CDS) from alignment at CM002462.1:979500..981965-

>rna4147 ID=rna4147|Name=rna4147|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002462.1:979500..981965- (Nannochloropsis gaditana)
GAGCTCATCCTCGTAGAAATGCTCGCCCTCGAAGTCCTCTACAACAAGCA
CCACCCCCTCCACCCTGCCGCCGTTGCCTCCTCCACCCCTTCCCCGGGGC
CTTTTCTGCTGGGAGGCCGCTTCTCTCTGGCGGAAGTGGTCATATTCCCT
TTCCTCGACCGCCTCTCAGTCGCTCTGCAGCATTACCGGGGCTTCCACCC
CCTCCGGTCCACCCACCTCCCCCGCCTCCAAGCTGCCTACGAGGTGGTGC
AAGAAAGGGCAGCGTGGAAGGCGAGCACCCAACCTCCCGCTTTCTACATC
GCCGTGTACGAAGCCTACGCCAGCCCGCCGTCCCCTGCCGCGGTGAGGGA
GGAGGAGAAGCGAAGAGGGGGCTGGCTGTGGCGGGCGGCATCGTTGGTGG
GGGCCGTGAATGCGGCGGTGCCCTTGTTGGGACTGGTGTCGTTTGCCTCG
CTGCTGGTCGGCGTGGGGGTGGGTAGGTACCAAGGCTGGGGGCCACACAG
TGCCCGCACAGGGGGGCGCTAGATGCCGGGGTTAGACGTATTGGATCAAA
TGGGTAAGGAAGGGCAGCGCATCGAGCCCTCGCAGGTAGACGCCGTCCTC
CACCGCCCCCACCAGGTCACTTTCTTCGGGAACCGCCTCTGTCCATACGC
ACACATTGCGTGGTGGAGTTTGTTGGAGAAAAACGTGGCATTCGATTACG
TGCACGTGGACTTGGGGCAGCAAAAGCCGGAGTGGTACAAAGAGAAGGTG
AACCCCTACGGCACGGTGCCGTCTTTGTACGACGGAGACAAGGCTGTGTT
TGAGAGCGTCATCATCGCCGAGTACGTGGAGGAAAAATTTGGAGCCGAAA
AGGGAACCCGCTTGATGCCTGCCGACCCCGTGGATAGGGCGGCAGTGCGG
TTGGTGATTGCACATTTCCGAGAGAGGACTTTACCGCCCTTGTATAAATT
GTTGAAAGCACAGACGCCGGCGGAAGCAAACGTGGCCAAGGAGCTCATCC
TCGTAGAAATGCTCGCCCTCGAAGTCCTCTACAACAAGCACCACCCCCTC
CACCCTGCCGCCGTTGCCTCCTCCACCCCTTCCCCGGGGCCTTTTCTGCT
GGGAGGCCGCTTCTCTCTGGCGGAAGTGGTCATATTCCCTTTCCTCGACC
GCCTCTCAGTCGCTCTGCAGCATTACCGGGGCTTCCACCCCCTCCGGTCC
ACCCACCTCCCCCGCCTCCAAGCTGCCTACGAGGTGGTGCAAGAAAGGGC
AGCGTGGAAGGCGAGCACCCAACCTCCCGCTTTCTACATCGCCGTGTACG
AAGCCTACGCCAGCCCGCCGTCCCCTGCCGCGGTGAGGGAGGAGGAGAAG
CGAAGAGGGGGCTGGCTGTGGCGGGCGGCATCGTTGGTGGGGGCCGTGAA
TGCGGCGGTGCCCTTGTTGGGACTGGTGTCGTTTGCCTCGCTGCTGGTCG
GCGTGGGGGTGGGTAGGTACCAAGGCTGGGGGCCACACAGTGCCCGCACA
GGGGGGCGCTAGATGCCGGGGTTAGACGTATTGGATCAAATGGGTAAGGA
AGGGCAGCGCATCGAGCCCTCGCAGGTAGACGCCGTCCTCCACCGCCCCC
ACCAGGTCACTTTCTTCGGGAACCGCCTCTGTCCATACGCACACATTGCG
TGGTGGAGTTTGTTGGAGAAAAACGTGGCATTCGATTACGTGCACGTGGA
CTTGGGGCAGCAAAAGCCGGAGTGGTACAAAGAGAAGGTGAACCCCTACG
GCACGGTGCCGTCTTTGTACGACGGAGACAAGGCTGTGTTTGAGAGCGTC
ATCATCGCCGAGTACGTGGAGGAAAAATTTGGAGCCGAAAAGGGAACCCG
CTTGATGCCTGCCGACCCCGTGGATAGGGCGGCAGTGCGGTTGGTGATTG
CACATTTCCGAGAGAGGACTTTACCGCCCTTGTATAAATTGTTGAAAGCA
CAGACGCCGGCGGAAGCAAACGTGGCCAAG

Synonyms

Publications