rna4146, rna4146 (mRNA) Nannochloropsis gaditana

Overview
Namerna4146
Unique Namerna4146
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length434
Alignment locationCM002462.1:977773..979444 +

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Properties
Property NameValue
Productendonuclease v
Orig transcript idgnl|cribi|Naga_100141g17.8373.mrna
Orig protein idgnl|cribi|Naga_100141g17.8373
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:977773..979444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100141g17gene3990Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4146rna4146-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26526.1cds4136Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4146 ID=rna4146|Name=rna4146|organism=Nannochloropsis gaditana|type=mRNA|length=434bp
GGGAAGGAGGGTCAGGTAGGGATGAAGGGGGGAGAAGACGGGGCCAAGAA
GAGGAGCTGGAAGAGGCGATGGAAAAGGAGGAAGAGGGAGGACGAGGGGG
GCGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGGGGAGGAGGAGGAAGGG
GAGGAGGATCCTTGGCAGTGGGATGATGGTGTTCCTGACCATTGGATGAA
GTCGGGGAAAGGGAGGATTGAGGGAGGGAGGGAAGGAGGGGAGGAAAACG
GGTTGCTCGAGACTTTGCTTGCCAGCCTGCTAGGGGTGGAGGAGGTGGAG
GAAGGGAGGGAGGGAGGGATGGTGTGGGAGATGGTATCGAGAAAATTGAC
CAAGCTCCTCACGTTTTGTGCCCTCCTGTATGCCGCGCTATCCTTGCGTG
AGATCATGTCCTGAGAAGGGAGGGAGGGCGGGGC
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protein sequence of rna4146

>rna4146-protein ID=rna4146-protein|Name=rna4146|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MDRSQYEDEGEDQQFKLPSSAHFGSEHGNMKTRPNLHAIETEWRADQERR
RIAILEVDTFDRASLTRVGGLDLSFFPSSHGHEREEAVACFVVLSYPSLE
VLHESYLPTTLTIPYVAGFLAYREGPPMAQLVEELRRTQPTLMPQVLMVD
GNGILHPRGCGLASHVGLLTGIPSIGCAKTFLHVEGLETLAVRKALQEQG
HRGGREGGREGGREGLTKGQDLVGGPGRRVEKREAGGGHRLEELETKGSR
TPEADVDNGEAGVRQEEVCPVNASTTHFHRAQSPGRVFHLVGRAGRVWGA
AFCPSGVSNPIYVSVGTGISLTSALSTVEACCKYRVPEPVRQADIRSRAW
VRTWEGGRGKVEAKGGGDPRGSSM
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mRNA from alignment at CM002462.1:977773..979444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4146 ID=rna4146|Name=rna4146|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp|location=Sequence derived from alignment at CM002462.1:977773..979444+ (Nannochloropsis gaditana)
tcaTCCAAAAATGGCAGCAGGGCCTGTCGGGGGGTACAAAAGAATATGAA
TGAAAGCCGAATGATGAGTGGGCAATGCACAAATTGTCGGTGACGGGTGT
AAATTAAGTGTGTTTTTAAAAGTTCGCCGTCCCGTCATTCAACTAAACTT
GAGTTCAGCGACAGGAACGGGGCCGAtatgggggaggaaatgctaCTCAA
CCCTAATGAAAAATGAGAAGCTTTTGTGAAAACACCGACGACACATACTT
CTCAAAGCAGAATACAGAATGTACAAAGCGCCACGGTGGCAGAAAGTGGC
GTGTctggcgaggggggggggagtcaaGTCGAAGCTGTGCAATCCGACTT
GACGTTGGCCTAGTGCATTTTTTTTTGCAGGGAACAAACGCATTGAAGCC
TCAAGCCTGCCACTGGGGATGGGAGACGATGTGTGATGGACAGGTCACAA
TAtgaggatgaaggggaggatcaACAATTcaagctgccctcctccgcaca
TTTCGGAAGCGAGCATGGGAATATGAAGACACGACCCAACTTGCACGCTA
TCGAAACAGAGTGGCGCGCCGACCAAGAGCGGCGCCGAATTGCCATTTTA
GAAGTAGACACTTTCGACAGGGCGAGCCTCACGCGGGTGGGGGGGTTGGA
TTTGAGTTTCTTCCCAAGCAGCCACGGGCacgagagagaggaggcagtgg
cctGTTTCGTGGTTCTATCCTATCCGAGCCTGGAGGTTCTGCATGAAAGC
TATCTGCCGACAACCCTGACAATCCCGTACGTGGCCGGATTCCTGGCCTA
CCGAGAAGGCCCCCCCATGGCgcagctggtggaggaattgCGACGAACAC
AACCCACCTTGATGCCTCAGGTTCTGATGGTGGATGGGAATGGCATACTG
CACCCGCGGGGTTGTGGGCTCGCTAGCCACGTGGGGCTTCTGACAGGGAT
CCCGAGCATTGGATGTGCCAAGACGTTCTTGCACGTGGAGGGACTGGAGA
CGCTCGCGGTTCGAAAGGCGTTGCAGGAGCAAGGCcacaggggagggagg
gagggagggagggagggagggagggagggcttgacaAAAGGGCAGGACCT
TGTCGGCGGCCCAGGGAGAAgagtggagaagagggaggcgggagggggtc
ACCGACTAGAGGAGCTGGAAACGAAGGGCAGCCGGACCCCAGAAGCCGAT
GTCGACAACGGAGAGGCAGGGGTTCGTCAGGAGGAAGTCTGCCCTGTGaa
tgcctccaccacccatTTCCACCGCGCCCAGAGCCCCGGCAGGGTCTTCC
ACTTGGTCGGAAGGGCAGGGCGCGTGTGGGGTGCGGCTTTTTGCCCCTCG
GGGGTCTCCAACCCAATCTACGTGTCCGTAGGCACCGGCAtctctctcac
ctccgccctcagCACTGTCGAGGCTTGTTGCAAGTATCGAGTCCCAGAGC
CCGTGCGACAGGCGGACATACGGTCCCGGGCGTGGGTACGGAcgtgggaa
ggcgggagggggaaggtcgaggcgaagggggggggggacccTCGTGGTAG
CAGTATGTaagggagacggagagacATGGCCTCgggtggtgggcgaggca
ataaagagggggaagaggcgggtgccagggagcgagggggatcGGTCAAG
CCAGCGAACCAATGTGtccggg
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Coding sequence (CDS) from alignment at CM002462.1:977773..979444+

>rna4146 ID=rna4146|Name=rna4146|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002462.1:977773..979444+ (Nannochloropsis gaditana)
ATGGACAGGTCACAATAtgaggatgaaggggaggatcaACAATTcaagct
gccctcctccgcacaTTTCGGAAGCGAGCATGGGAATATGAAGACACGAC
CCAACTTGCACGCTATCGAAACAGAGTGGCGCGCCGACCAAGAGCGGCGC
CGAATTGCCATTTTAGAAGTAGACACTTTCGACAGGGCGAGCCTCACGCG
GGTGGGGGGGTTGGATTTGAGTTTCTTCCCAAGCAGCCACGGGCacgaga
gagaggaggcagtggcctGTTTCGTGGTTCTATCCTATCCGAGCCTGGAG
GTTCTGCATGAAAGCTATCTGCCGACAACCCTGACAATCCCGTACGTGGC
CGGATTCCTGGCCTACCGAGAAGGCCCCCCCATGGCgcagctggtggagg
aattgCGACGAACACAACCCACCTTGATGCCTCAGGTTCTGATGGTGGAT
GGGAATGGCATACTGCACCCGCGGGGTTGTGGGCTCGCTAGCCACGTGGG
GCTTCTGACAGGGATCCCGAGCATTGGATGTGCCAAGACGTTCTTGCACG
TGGAGGGACTGGAGACGCTCGCGGTTCGAAAGGCGTTGCAGGAGCAAGGC
cacaggggagggagggagggagggagggagggagggagggagggcttgac
aAAAGGGCAGGACCTTGTCGGCGGCCCAGGGAGAAgagtggagaagaggg
aggcgggagggggtcACCGACTAGAGGAGCTGGAAACGAAGGGCAGCCGG
ACCCCAGAAGCCGATGTCGACAACGGAGAGGCAGGGGTTCGTCAGGAGGA
AGTCTGCCCTGTGaatgcctccaccacccatTTCCACCGCGCCCAGAGCC
CCGGCAGGGTCTTCCACTTGGTCGGAAGGGCAGGGCGCGTGTGGGGTGCG
GCTTTTTGCCCCTCGGGGGTCTCCAACCCAATCTACGTGTCCGTAGGCAC
CGGCAtctctctcacctccgccctcagCACTGTCGAGGCTTGTTGCAAGT
ATCGAGTCCCAGAGCCCGTGCGACAGGCGGACATACGGTCCCGGGCGTGG
GTACGGAcgtgggaaggcgggagggggaaggtcgaggcgaaggggggggg
ggacccTCGTGGTAGCAGTATGTaa
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Synonyms
Publications