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Properties
| Property Name | Value |
|---|
| Product | membrane transporter |
| Orig transcript id | gnl|cribi|Naga_101407g1.3603.mrna |
| Orig protein id | gnl|cribi|Naga_101407g1.3603 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:973106..974808 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4143 ID=rna4143|Name=rna4143|organism=Nannochloropsis gaditana|type=mRNA|length=641bp
TAAAGGGCCGTTAAAGCCTACCCAAGCATCTTACAGTGGTACCAGTGGAT
GCTGTATGGATGTGGAAGGCGGCAGCGAATTTTAACGAGCCTTTTTGCGG
GGCATTGCAGGGGCCCGGTCCCTGTCATCGCCTCGCCTGCTCGTCTTATC
TCTGGTACCTGTGCCCGCATAAAACACCGCAACTGCTGGACGAAGGACGA
CAGCCACGCTTCTGACAATATTGAACAAAGATGCGCGACCGGTGACCCGG
ACCAATATCTCACAAATCAGCAGATGAGTTCATTAAAGGAAGGTGAAGCC
GTGCCGGCAGCGCGCTCCCTCTCACAAGCCCTCCGCAAAGACAGCCAAGG
AAAGCAACGGCCTGAAGAAAATAAAGACGCGCATGCAACGATGCACGGTC
GTGAATTGGGTAATGGGGCAGAACGTCGAAAGTCACTGCCAAGGCTTTCA
GAGACGCCGCCATGCACCCGCGGGCACGGCGGGGAGGGTCCCGATGGATC
CGGAGGGAGAAAAGGGGCCCCGAAGAAGGTGCATATGTGTGAAGGAGGGA
AGGGCTCGAGGGGAACAAAGCTAATGCCTGGGGCGGGAGGGAAGGGAGAC
ATCCGCCGCCATGGGAGCTCGCCGGCCTATCATCTTTTCTC back to topprotein sequence of rna4143 >rna4143-protein ID=rna4143-protein|Name=rna4143|organism=Nannochloropsis gaditana|type=polypeptide|length=481bp
MSRTRPKPVSLCIHPTKGRKMKAWGMRLGPFGLCMVAVIVSFWVRDTGAF
LLRPIPTHPLPPFHMTPACDRLSTHRSASLPCPSRAHCPAAAFPRFGPRP
RTRLFAFPSLVIQPTAFKTSVNAVLRLVASCGLGLGAASHGLLDQASLST
LSRLIFAFFQPALLFTNVATTLATPSSYGSSLLVLPAFAVLQILFGFLYG
KGMAASLRLDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLY
PRAVAYISFYLVAWSPLFWTLGSTILGSSTSQPAYAKSPPSPSPSPTLPS
RLLHHPLLRKTLSPPTLGCLLGALVGSTPFLRAIFFGPTAPLAALFDALR
TMGSAYLPTVLLVLAGSLAQGFKSLNLKDPALLSRTGAICFARFFLMPAT
AFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQRPAAA
ASMATLVSLVYLAAVVPMGLLLSFVLQYVGL back to topmRNA from alignment at CM002462.1:973106..974808+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4143 ID=rna4143|Name=rna4143|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp|location=Sequence derived from alignment at CM002462.1:973106..974808+ (Nannochloropsis gaditana)
CATGTACAACCCATGTCCAGGACACGCCCAAAACCCGTATCTCTTTGCAT
CCACCCCACAAAAGGCAGAAAAATGAAGGCATGGGGCATGCGTTTGGGAC
CGTTCGGACTGTGCATGGTCGCAGTAATCGTCTCTTTTTGGGTAAGAGAC
ACAGGTAAAtagacgaggacgagcctGGTGGCGGGGAATTTTAAGGCCAG
GCCGAACAACTATTTTTGTATAGACACAGCCTGCCAAAAATCCTTCTTAG
CGTCTTTCGTAGTATCAAAAATCAGGTTTAGTGTCTTATTGCATTCACGT
CTTTGGCCCCGCCTGAAACGACCTGGTCGCCGTTCACTTTCCCACAGGCG
CCTTCCTACTTCGTCCAATCCCAACCCATCCCTTACCACCCTTCCACATG
ACGCCTGCATGTGATCGTCTATCGACACATCGCAGTGCGTCCTTACCGTG
CCCCTCCAGGGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTttgggcccc
gccctcgaacccgcctcttcgccttcccctccctcgtgatTCAGCCCACT
GCCTTCAAGACTTCCGTCAacgccgtcctccgcctcgttGCCTCCTGCGG
TCTGGGCCTAGGGGCCGCCTCCCACGGTCTCCTTGACCaggcttccctct
ccacgcttTCGCGCCTTATTTTCGCTTTTTTCcaacccgccctcctcttc
accaaCGTGGCGACAACCTTggccaccccttcctcgtacggttcctccct
cctcgtgctccccgccttcgcGGTCCTGCAAATCCTCTTCGGTTTCCTCT
ACGGGAAGGGtatggccgcctccctccgccttgacCCGGCCTCGGACGCG
GGGAAAGAACTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGCCgttgcc
cctccttttcgccgacgccttcttccgcctccacccgACCGATCCTACCC
TCTACCCACGCGCTGTTGCCTACATATCTTTCTACCTGGTGGCTTGGTCG
CCGCTCTTTTGGACGCTGGGCAGCACCATCCTCggctccagcacctccca
ACCGGCCTATGCCaagtcccctccctccccatcaccttctcccaccctcc
cctcccgcctcctccaccatccccttCTCCGAAAgaccctctctcctccc
accctggGCTGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTTttcttcg
cgccatttttttcGGGCCGACCGCCCCCTTGGCGGCGCTTTTTGACGCCC
TTCGCACCATGGGCTCCGCCTATCtccccaccgtcctccttgtcctcgct
gGTTCCCTCGCCCAGGGATTCAAAAGTTTGAATCTGAAAGATccggccct
cctctcccggacGGGCGCCATCTGcttcgcgcgctttttcctcatgccgg
ccacggccttccttctcctcaccctGGGCcgcgccttttccctcatcccg
tcctccgatcccctccttgccttcgtcctcctccttcaagcctGCATGCC
CTGCGCCCAGAACACGGTCGTCATCCTTCAACTCCAACAGCGgcccgcgg
ccgccgcctctaTGGCCACGCTAGTCTCCCTCGTTTATCTTGCGGCCGTC
GTGCCCATGGGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGGGGCTGTA
AAAGAGGCAGACAAGGCCATTTTCCATcgcggtggggaggaggttgcttT
CCC back to topCoding sequence (CDS) from alignment at CM002462.1:973106..974808+ >rna4143 ID=rna4143|Name=rna4143|organism=Nannochloropsis gaditana|type=CDS|length=2892bp|location=Sequence derived from alignment at CM002462.1:973106..974808+ (Nannochloropsis gaditana)
ATGTCCAGGACACGCCCAAAACCCGTATCTCTTTGCATCCACCCCACAAA
AGGCAGAAAAATGAAGGCATGGGGCATGCGTTTGGGACCGTTCGGACTGT
GCATGGTCGCAGTAATCGTCTCTTTTTGGGTAAGAGACACAGGCGCCTTC
CTACTTCGTCCAATCCCAACCCATCCCTTACCACCCTTCCACATGACGCC
TGCATGTGATCGTCTATCGACACATCGCAGTGCGTCCTTACCGTGCCCCT
CCAGGGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTttgggccccgccct
cgaacccgcctcttcgccttcccctccctcgtgatTCAGCCCACTGCCTT
CAAGACTTCCGTCAacgccgtcctccgcctcgttGCCTCCTGCGGTCTGG
GCCTAGGGGCCGCCTCCCACGGTCTCCTTGACCaggcttccctctccacg
cttTCGCGCCTTATTTTCGCTTTTTTCcaacccgccctcctcttcaccaa
CGTGGCGACAACCTTggccaccccttcctcgtacggttcctccctcctcg
tgctccccgccttcgcGGTCCTGCAAATCCTCTTCGGTTTCCTCTACGGG
AAGGGtatggccgcctccctccgccttgacCCGGCCTCGGACGCGGGGAA
AGAACTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGCCgttgcccctcc
ttttcgccgacgccttcttccgcctccacccgACCGATCCTACCCTCTAC
CCACGCGCTGTTGCCTACATATCTTTCTACCTGGTGGCTTGGTCGCCGCT
CTTTTGGACGCTGGGCAGCACCATCCTCggctccagcacctcccaACCGG
CCTATGCCaagtcccctccctccccatcaccttctcccaccctcccctcc
cgcctcctccaccatccccttCTCCGAAAgaccctctctcctcccaccct
ggGCTGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTTttcttcgcgcca
tttttttcGGGCCGACCGCCCCCTTGGCGGCGCTTTTTGACGCCCTTCGC
ACCATGGGCTCCGCCTATCtccccaccgtcctccttgtcctcgctgGTTC
CCTCGCCCAGGGATTCAAAAGTTTGAATCTGAAAGATccggccctcctct
cccggacGGGCGCCATCTGcttcgcgcgctttttcctcatgccggccacg
gccttccttctcctcaccctGGGCcgcgccttttccctcatcccgtcctc
cgatcccctccttgccttcgtcctcctccttcaagcctGCATGCCCTGCG
CCCAGAACACGGTCGTCATCCTTCAACTCCAACAGCGgcccgcggccgcc
gcctctaTGGCCACGCTAGTCTCCCTCGTTTATCTTGCGGCCGTCGTGCC
CATGGGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGGGGCTGTAAATGT
CCAGGACACGCCCAAAACCCGTATCTCTTTGCATCCACCCCACAAAAGGC
AGAAAAATGAAGGCATGGGGCATGCGTTTGGGACCGTTCGGACTGTGCAT
GGTCGCAGTAATCGTCTCTTTTTGGGTAAGAGACACAGGCGCCTTCCTAC
TTCGTCCAATCCCAACCCATCCCTTACCACCCTTCCACATGACGCCTGCA
TGTGATCGTCTATCGACACATCGCAGTGCGTCCTTACCGTGCCCCTCCAG
GGCGCATTGTCCCGCCGCGGCTTTTCCTCGTTttgggccccgccctcgaa
cccgcctcttcgccttcccctccctcgtgatTCAGCCCACTGCCTTCAAG
ACTTCCGTCAacgccgtcctccgcctcgttGCCTCCTGCGGTCTGGGCCT
AGGGGCCGCCTCCCACGGTCTCCTTGACCaggcttccctctccacgcttT
CGCGCCTTATTTTCGCTTTTTTCcaacccgccctcctcttcaccaaCGTG
GCGACAACCTTggccaccccttcctcgtacggttcctccctcctcgtgct
ccccgccttcgcGGTCCTGCAAATCCTCTTCGGTTTCCTCTACGGGAAGG
GtatggccgcctccctccgccttgacCCGGCCTCGGACGCGGGGAAAGAA
CTCGCCGTCTGCTCCGCCTTTGCCAACTCCGGGCCgttgcccctcctttt
cgccgacgccttcttccgcctccacccgACCGATCCTACCCTCTACCCAC
GCGCTGTTGCCTACATATCTTTCTACCTGGTGGCTTGGTCGCCGCTCTTT
TGGACGCTGGGCAGCACCATCCTCggctccagcacctcccaACCGGCCTA
TGCCaagtcccctccctccccatcaccttctcccaccctcccctcccgcc
tcctccaccatccccttCTCCGAAAgaccctctctcctcccaccctggGC
TGCCTTTTGGGCGCCTTGGTGGGTAGTACCCCTTttcttcgcgccatttt
tttcGGGCCGACCGCCCCCTTGGCGGCGCTTTTTGACGCCCTTCGCACCA
TGGGCTCCGCCTATCtccccaccgtcctccttgtcctcgctgGTTCCCTC
GCCCAGGGATTCAAAAGTTTGAATCTGAAAGATccggccctcctctcccg
gacGGGCGCCATCTGcttcgcgcgctttttcctcatgccggccacggcct
tccttctcctcaccctGGGCcgcgccttttccctcatcccgtcctccgat
cccctccttgccttcgtcctcctccttcaagcctGCATGCCCTGCGCCCA
GAACACGGTCGTCATCCTTCAACTCCAACAGCGgcccgcggccgccgcct
ctaTGGCCACGCTAGTCTCCCTCGTTTATCTTGCGGCCGTCGTGCCCATG
GGCCTCTTGCTTTCCTTCGTCTTGCAGTACGTGGGGCTGTAA back to top
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