rna4134, rna4134 (mRNA) Nannochloropsis gaditana

Overview
Namerna4134
Unique Namerna4134
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2494
Alignment locationCM002462.1:953429..954803 -

Link to JBrowse

Properties
Property NameValue
Productmethionine aminopeptidase
Orig transcript idgnl|cribi|Naga_100084g2.1568.mrna
Orig protein idgnl|cribi|Naga_100084g2.1568
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:953429..954803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100084g2gene3979Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26560.1cds4124Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4134rna4134-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4134 ID=rna4134|Name=rna4134|organism=Nannochloropsis gaditana|type=mRNA|length=2494bp
TCACCCGTCAACGCTTCCTTTCTTTCCTCCCCCACCCAGCCTGATCCACG
TCCCCGTCAATGTGCCCGCCCTCGCTGCCACCACCGGGGTGGAGGCAGAC
CTGAACAAGGAGCTGAGAGCCCATGGAGTGGCCAACCTCCTCTGTGGGCT
TTCAGGGGCCCTCCAGACGTACATGGCATACTCGTAGGGAGGGAGGGCGG
GAAAGCGGAGGGAAGGGGTGTGTGGAAGGTTGGTCGGGAAGAAAAGACGG
ATTTGATGATTCAAATTTCCTTTTCCCTCCCTCCCTCCCTCCTTCCCACC
CATCCTCCTCCCGCAGCACCAGCGCCCTTTACTACAAGACCGGCGGGGGA
GGGCGCTTCTCTTCCTTCCTCATCACCGTCCTCATGGCCAGCTTCCTCCT
CATGGGCCCCAAGGCGATCAACTACTTCCCCCGGCCTCTGGCAGGCTCCC
TCCTCCTTCACCTGGGAGCCGTCCTGCTCTACGAAAGCGTCGTCTCCACT
TGGCAGAAGTCGGTGGATTGGAGCGAGTACGTGACCATCTGGACCATCAC
GCTCAGCATGACCCTCATTGGCTTCATGGAAGGCGTGGGCATCGGCCTAC
TCCTGGCATGTGGCATCTTCGTCGTGCAATGCTCTGGCAACAACCCGATT
GGGAGTGCTTTTTCAGGGGACGGTCTCTCCAGCAAGGAGATGCGTTCGCC
CGCCCAACGGAAGCTTTTGGAATATCGCCTGCAGGGTTCCATATACATCA
TTCGATTGCGCGGCAACCTCTTCTTCGGCAACATCGAGCAACTCTTCCTT
CACCTGCGCGAGGTTCTCCACTGCATGCCACACCTCCTCTTTTTGGTTCT
GGATACGGGAGAACTGGCCGGCATCGATTTCTCAGCCCGGGACCGGCTCG
CGAAAATGTGCCGGTCGATGACGGGGGAGGGAGGGAGGGAGGGAGGGAAG
CGGGGCGGGAGGAAGGTGCACTTAGTGTGGGCAGGCCTGCACAAATCGGT
GAAGGAGAAATTGCGGGCGGGAAAATGCTTCGGAGAGGAGGACGGGACGG
GAAAAGGCGGTAAGATCCAGGCAGCATTGGCCGTCAAAGGACCCGGGAGA
AGGGGAGGAGGTTCGGGACGGGGGGAAGGGTGGGGATGGGCCTCCCTGGC
CCGCGGGAAACAGATGCACCATTTTGCCCGAGACCTGAACAAGGCGTTTA
CCTTCTGCGAAGACACGATCCTGGCTGCGGTGGGAGCGTTGGACGAGGAA
GAGGAGGAGTCGGAGGAGGAGAGGAAGACCGCGCAGGGGCCGGGCCTTCG
GCCGGGGGGGAAGCGGGATGGGGATACGAAAGTAGGGATCCCCTCCCCTC
CTGTCTCCTTTGCAGGGGGTGGGGCGCCGACTGGGAGGGAATTTTTGCAC
CGGACGTTGCGAAAATTGGCGCGTCGGGCCACGGAGGCGGTGGACGAGGG
CATGCTGGCCCGCTTGCTCTCTTCTTTCACGCAGGAGTCCCTCCCCGCGC
GCGCGACCCTGTGGCGGCGCAATGACCCGTCCACGTTTGCCTGCATTGTC
CAAAAGGGGGTGTTGGGGGTACCGCGGCTCAAGGAGGACCCTTCCGTCTC
AGCCAGTCTTGCTCAGGCACCTGGGTGCTTGCTCTCCGGCACCCTGCCCC
CGTCCTCCCCCTCCTCCTCCTCCTTGCCTTCCACCCGGTTGAAAGCCGGG
ACCCGGTTTCGCGCCAATTCCCATTCGGACGTGGCGGACGACGAGGAGGA
GGACGTCCGCACCAGGTACACCCACCCTTCCTACCCCGACCTCGTCTCCC
TCGCCAGCACGGTGGGGGGAAAACCCGGACATTTTCGGGAATATTCACTC
CCGGGGCAAATGTGCGGGGAGCTCGGGCTTTTCACCCGGGGCCTTCGGAA
ATACACGATGGTGGCCATCACCGAGGCTGTCATCTGGCGGTTAGATGCGG
GGAGGTTGAAAAAAATGAGGGTGGAAGATCCTCAGGCCTACATTGTCATG
CAGGGCATCGTCTTGAGCTACGCCAGCCATCGGTTGAATTGCTTGATGCT
TCAAGGGCAGCTCCACTCGGTATAAAAAGCGGAGGATGGATGTGGATGGT
CAGGAAGGAGAGGTAGAGGGAGGGAGGGAGGGAATATTGGGCGAGGAGAA
GACAAAGTTCCTGTTGGTCACAAGCAATTTTGTGTGGACGCCTGAAGGGG
CGGGCGGCTAGAGGTAGACTGGGTGGGAGGTACAACGCTCCGAGTAGGGC
AGGCGAGTCATCAGTTTTGATCCGACGAAGACGTCGTCAGTTTTGGTCTG
AGCCAGACCCGCCCGTGGTGGAGACAGGGACGATACATAGAAATGAGAAG
AAATGCTGCCTGGGAAGGTGCACTAGAAATTGGAATGAAAGAAAATAAAG
ATGCATGCCGTGATGTTGCTATGTTGGGGTCATGCTGCCAGGGGAAATGG
ACTAGAAATTGACATTAAAGGAAATGAAGATGCATGCCGTGACG
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protein sequence of rna4134

>rna4134-protein ID=rna4134-protein|Name=rna4134|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MKVAAACQRLRHDPRRYARLRQSCIPRATHGTPVRNFFSFGKEERANERG
GRRGASVPPRPPMAPGHVSPRRALPANSPVVKPNYADTGKLPPPSPSILL
HTPESIEKMRAAGRLARKMLDYTCSLVRPGITTEEIDRRVHDAILASGAY
PSPLNYWGFPKSICSSINEVVIHGIPDDRPLQEGDIAKFDISLYFQGVHG
DNCASVGVGEVDAEGLRLMTAAKEALQAGIDACGPGACLSGIGSAVHAVA
DKYEYETVRAYSGHGVGPDLHMRPFVLHYRNGERLPLRPGMIFTIEPMLL
EHGPEITTWADGWTVVSKDGGRGAQFEHTVLITEDGVEVLTLPE
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mRNA from alignment at CM002462.1:953429..954803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4134 ID=rna4134|Name=rna4134|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp|location=Sequence derived from alignment at CM002462.1:953429..954803- (Nannochloropsis gaditana)
AGAGGAGTTGCTCACACGATACACCGCCGCGAATCAGCCTTACTCTTGTC
TTAAAAAGCACCAGAATAAGGCGGCATTGACATACGTTTGCAATGGTCAA
ATCATTCTTTTCTCTCTTCTCCCTGTTTTACCATCGCTTTTCTTTAGGAA
GCCACAGGGCGAGGCCCGTTCCGTACCAATGAAGGTCGCTGCAGCGTGCC
AACGCCTAAGACACGATCCCCGCCGGTACGCACGGCTCCGGCAATCATGC
ATCCCCCGTGCCACGCATGGCACACCAGTACGGAATTTTTTCAGTTTCGG
AAAGGAGGAAAGAGCCAACGAGAGGGGGGGGCGTCGTGGCGCCTCAGTCC
CCCCTCGCCCTCCCATGGCGCCAGGACACGTCTCCCCTCGTCGGGCACTG
CCTGCCAATAGCCCTGTAGTCAAACCGAACTACGCCGATACGGGCAAGCT
GCCGCCTCCCTCCCCTTCCATTCTCCTGCACACCCCTGAAAGTATCGAGA
AAATGCGGGCTGCGGGTCGATTGGCCCGGAAAATGCTGGATTACACATGC
TCGCTCGTGCGGCCGGGCATCACCACGGAAGAAATCGACAGGCGCGTGCA
TGACGCTATTCTTGCCTCGGGCGCGTATCCGTCCCCCCTCAATTATTGGG
GCTTCCCCAAGTCGATTTGCTCCTCCATCAATGAAGTGGTGATCCACGGG
ATCCCTGACGACCGCCCTCTCCAAGAGGGAGACATCGCCAAATTCGACAT
CTCCCTCTACTTCCAGGGCGTGCACGGGGACAACTGCGCCTCTGTGGGTG
TGGGAGAGGTGGATGCGGAGGGTTTGCGGCTCATGACCGCGGCGAAGGAA
GCTTTACAAGCTGGGATCGACGCTTGTGGACCGGGAGCCTGCCTGAGTGG
CATTGGGTCTGCCGTGCACGCCGTGGCCGACAAGTATGAATACGAGACGG
TGCGTGCCTATAGTGGGCACGGAGTGGGCCCGGATTTGCACATGCGCCCT
TTTGTTTTGCACTACCGGAACGGGGAACGCTTGCCCCTTCGTCCGGGTAT
GATTTTCACGATCGAACCCATGCTGTTGGAGCATGGCCCGGAGATCACCA
CATGGGCGGACGGATGGACAGTCGTAAGCAAGGACGGCGGGAGGGGTGCC
CAATTTGAGCACACGGTACTAATTACGGAGGATGGGGTGGAGGTGTTGAC
GCTTCCTGAGTGAGGGCGGGGTGGTGGGGGAGGGGGCAGGCCCCTGCTTT
TCCCCATGGCGGGTCGAAGTGAAGAACGACGGATGTACATATCAACGTCG
CGGGAAATTTTTTGAGTTTCAATTCCAGGCAGCATAATCCTAACATAGCA
ACGTCACGGCATGCATCTTCATTTC
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Coding sequence (CDS) from alignment at CM002462.1:953429..954803-

>rna4134 ID=rna4134|Name=rna4134|organism=Nannochloropsis gaditana|type=CDS|length=1035bp|location=Sequence derived from alignment at CM002462.1:953429..954803- (Nannochloropsis gaditana)
ATGAAGGTCGCTGCAGCGTGCCAACGCCTAAGACACGATCCCCGCCGGTA
CGCACGGCTCCGGCAATCATGCATCCCCCGTGCCACGCATGGCACACCAG
TACGGAATTTTTTCAGTTTCGGAAAGGAGGAAAGAGCCAACGAGAGGGGG
GGGCGTCGTGGCGCCTCAGTCCCCCCTCGCCCTCCCATGGCGCCAGGACA
CGTCTCCCCTCGTCGGGCACTGCCTGCCAATAGCCCTGTAGTCAAACCGA
ACTACGCCGATACGGGCAAGCTGCCGCCTCCCTCCCCTTCCATTCTCCTG
CACACCCCTGAAAGTATCGAGAAAATGCGGGCTGCGGGTCGATTGGCCCG
GAAAATGCTGGATTACACATGCTCGCTCGTGCGGCCGGGCATCACCACGG
AAGAAATCGACAGGCGCGTGCATGACGCTATTCTTGCCTCGGGCGCGTAT
CCGTCCCCCCTCAATTATTGGGGCTTCCCCAAGTCGATTTGCTCCTCCAT
CAATGAAGTGGTGATCCACGGGATCCCTGACGACCGCCCTCTCCAAGAGG
GAGACATCGCCAAATTCGACATCTCCCTCTACTTCCAGGGCGTGCACGGG
GACAACTGCGCCTCTGTGGGTGTGGGAGAGGTGGATGCGGAGGGTTTGCG
GCTCATGACCGCGGCGAAGGAAGCTTTACAAGCTGGGATCGACGCTTGTG
GACCGGGAGCCTGCCTGAGTGGCATTGGGTCTGCCGTGCACGCCGTGGCC
GACAAGTATGAATACGAGACGGTGCGTGCCTATAGTGGGCACGGAGTGGG
CCCGGATTTGCACATGCGCCCTTTTGTTTTGCACTACCGGAACGGGGAAC
GCTTGCCCCTTCGTCCGGGTATGATTTTCACGATCGAACCCATGCTGTTG
GAGCATGGCCCGGAGATCACCACATGGGCGGACGGATGGACAGTCGTAAG
CAAGGACGGCGGGAGGGGTGCCCAATTTGAGCACACGGTACTAATTACGG
AGGATGGGGTGGAGGTGTTGACGCTTCCTGAGTGA
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Synonyms
Publications