rna4127, rna4127 (mRNA) Nannochloropsis gaditana

Overview
Namerna4127
Unique Namerna4127
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1438
Alignment locationCM002462.1:927561..929108 +

Link to JBrowse

Properties
Property NameValue
Productcold-inducible rna-binding protein
Orig transcript idgnl|cribi|Naga_100084g12.1573.mrna
Orig protein idgnl|cribi|Naga_100084g12.1573
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:927561..929108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100084g12gene3972Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4127rna4127-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26565.1cds4117Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4127 ID=rna4127|Name=rna4127|organism=Nannochloropsis gaditana|type=mRNA|length=1438bp
AACCTGGGGTTCCGGCGTAAGGCCCGCGATTTCCACGCAGATGTCATCGC
CCGTTTTTGGCTCGAACGGATCGGAACGATTCTAAATCGGTGGGTATGTT
TTTATGCTGATAGCACTGTCTTGATGACCAAAAACGTGTCACAGGGCAAC
TCCATACATGTTAGGCGGCCGTCAGGCACTGAATCTTTCTCAGAGGTACC
TCGCGTCCATCGGGACGCATCTACTTCTCCTCTTCTTCGTCCGGCCGCAT
TTTCCGACTGCCATCATCTCCTTTGGAGTATGTGATGCCTTCGTATCGCA
GTTTTCACCCAATGTACAATACGACGTCTCAAATTCATGGATATCGCTGT
CGCGGCGACTGCACCAGCGTGGCAGGGACTTGGTTCCATTCTCATCAGGG
GTCGCCCCTGACCTGCAGGCGGCTAGTCGCAGCATCGATGTCCCAGACCT
ACCGGGACTTGTGACCACTGAATGGCTGGCAGACCATGTAGACGATGAAG
ACTTAGCCATTCTCGACGTCCGCGGAGAAGTTGCTAAGGCCCCTGTCACG
AATGGCACGCAAGAATCCGAATATATTGCTTTGAAGGGCGATTATGTCGA
TGCGCATATTCCAAATGCGGCCTTCGTAGATTGGATCGATGACATCGCTT
ACACGGACGATGCCGGAGTTCCCGTTCAAATACTACCACTTGATGACTTT
CGCGTGTGCATGGAATCAAGAGGCGTGGGTTTGAGGAAGCGGGTCGTCAT
TTATGACAACGGTAATTTCCTTTTTGCCACAAGGCTGTGGTGGGCTTTGC
GCATTGCAGGGCATCAAGCGGTGGCTATCCTTGATGGTGGGTGGAACAAG
TGGCTTGCAGAAGACTGGCCTGTGACTGCCGACGCGCCGTGCCCCTTGAA
AATAAATGAAGCATGGGAGAGTGAGTTTATAGCCACATCTGTCGACGGCG
CAATGATCCCTTCCTTTCTTTCCTCCCGCGTGAACGCCAGTCAAGTCTTG
CAGTTCTGTCAGGAGGACTCTGGAAGTGAGAACGTGCAAATTATCGATGC
ACGCAGTCGGGAGCAGTACATGGGAAGGATATCCCGCTCTTCACGCGCAG
GACACATTCCCCGCGCGCGCTCCCTGCCCTACAAAGATCTACTTACACCT
CCCATAGTACATCCGCTTTCGCGACATCCATACCGACTGATAAAATCGAA
AGATGCTTTGGAACTGACTTTGCGCGAGGCAGGTGTAAGCATAGATGGGC
AGGCAACGCCTCTGACGTGTGTTTATTGTAATGGCGGTGTTGCATCCACA
GTTGTTATTTTTGTACTCAATCAGCTGTATGGCATGCGAACGAGTAATTT
TGATGGGTCCTGGAATGAGTGGGGGAAGCGGGAGGACTTTCCTGTTTCTT
CAGAAATGGACAAGTAAAGTTCAAACTGATTTGCTTTC
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protein sequence of rna4127

>rna4127-protein ID=rna4127-protein|Name=rna4127|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MRRQGSLSGFKGIPKSKPMSDAEEAVASTAVEETSKNEEEALNDEGKLYI
GNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDA
QGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRGRGRGRGYRGPR
NRGEGGGDGGGEGSAAPES
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mRNA from alignment at CM002462.1:927561..929108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4127 ID=rna4127|Name=rna4127|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp|location=Sequence derived from alignment at CM002462.1:927561..929108+ (Nannochloropsis gaditana)
AAATGACCGGAAGAGGTCGAATGAGGGGGCTCGGTTGGACACTTGTCTGG
TTTTCGGTGGTGGACCTCGGGGGGTAGGACGACGGGAGCGGAACGCCGTC
CAGCACTGTGGCTCTGGCTCTTCGTTCACTCATGGCACCATCTTTGACAT
CCTTTCATGCGCCGTCAGGGATCCTTGTCGGGATTCAAAGGGATTCCCAA
GAGCAAGCCAATGAGTGACGCTGAGGAGGCTGTTGCGAGTacagcggtgg
aggagacctctaagaacgaggaggaggccttaAATGATGTAAGTTTTCAT
GACTTTCTCACCTCAGACAATCCTTGATGCTAATTTTGCCCAAAAATATA
TGTGCtacaggagggaaagctgtACATTGGTAATCTTTCATTCAAAACCA
CTGAGGATGGGCTGCGCGAGGCGTTTTCTGAGCATGGAGAGGTTTCGTTT
GCCCGTGTCATCAGTGACCGAGACACCGGTCGTTCCCGGTAAGCGCGCTA
TTATATCAAAAATTGATTGTTGCTATGTCAAGAGGATAGAGGCATTTAAT
GAATAATTTACACGTCCCAGGAAGTGATCTGAAGAGGTCTTCTTGCATGA
GGGAGGGCCTTCCACCCATCCCCTCTCATACCTTCATTCCCGTCGTTCCC
CGCGGTATAAAATCCGCACAGAGGCTTCGGATTTGTGACTTTCACGAACA
AAGAAGATGCTCAGGGGGCTATCGATGCGCTGAACGAAACCGAGCTTGAC
GGACGCCCGATCCGGGTGAGCAAGCTCTTCAAGTGACCTCCCACTTCTCC
GAACACGATCTGTCGAAAcattcccttttcctctctcacaTACACGGCCT
TCATACTCCATGACACAGGTGAATTTCGCCCAGCCCCGCGACCCAAATgc
tcctcgccgtcctcctcgcagctaccggggccgggggcgcggGCGTGGAT
ACCGCGGCCCCCGCAatcgtggagaggggggcggagatggtggtggagag
ggaagcgcTGCTCCGGAATCGTAAAGTAAGGTTCTAAGGTAACCAGGTGG
AATCTACGGTAGGAAGGAGCGCGAGGCGGGGTTTGTCTTCAAACGTGTGT
GGTACCTTGACCCCAACCGTAAGGGCACCTCCCTTTTTGACGGCGGCTCG
AAGCATGGGACTTGTGGTCCGTAAGTGATTTATTTTTCGTTAATGTCGAC
GTTTCGTGCGATGAGACATGTCTTATGGCGAGACAAGAAGCGGTGACTTA
TTTCGTGACTGCCATCATTCTGGAGGGGTGGCCGCTGGGAAACGGGGGAT
GGTAGATAGAAGACCATTTCctagaaaggaaaggataggaggaggaagga
gaggggaagcggttgagggaggaatgggaggaggaggatctaTCGTGGAA
AAAAGCAAGCCAGAGAGATGCCCTGCAATCGTTGTAGTCCCCTTTAAAGT
GTTCACCTTTCATGTCATTTTAATTAGCAATAAACCTTGCCCAAGAAAAG
CAATGACTGACGGTACTCAGCCATCAAAACGGGGTATGCGCAAAAGAC
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Coding sequence (CDS) from alignment at CM002462.1:927561..929108+

>rna4127 ID=rna4127|Name=rna4127|organism=Nannochloropsis gaditana|type=CDS|length=2040bp|location=Sequence derived from alignment at CM002462.1:927561..929108+ (Nannochloropsis gaditana)
ATGCGCCGTCAGGGATCCTTGTCGGGATTCAAAGGGATTCCCAAGAGCAA
GCCAATGAGTGACGCTGAGGAGGCTGTTGCGAGTacagcggtggaggaga
cctctaagaacgaggaggaggccttaAATGATgagggaaagctgtACATT
GGTAATCTTTCATTCAAAACCACTGAGGATGGGCTGCGCGAGGCGTTTTC
TGAGCATGGAGAGGTTTCGTTTGCCCGTGTCATCAGTGACCGAGACACCG
GTCGTTCCCGAGGCTTCGGATTTGTGACTTTCACGAACAAAGAAGATGCT
CAGGGGGCTATCGATGCGCTGAACGAAACCGAGCTTGACGGACGCCCGAT
CCGGGTGAATTTCGCCCAGCCCCGCGACCCAAATgctcctcgccgtcctc
ctcgcagctaccggggccgggggcgcggGCGTGGATACCGCGGCCCCCGC
AatcgtggagaggggggcggagatggtggtggagagggaagcgcTGCTCC
GGAATCGTAAATGCGCCGTCAGGGATCCTTGTCGGGATTCAAAGGGATTC
CCAAGAGCAAGCCAATGAGTGACGCTGAGGAGGCTGTTGCGAGTacagcg
gtggaggagacctctaagaacgaggaggaggccttaAATGATgagggaaa
gctgtACATTGGTAATCTTTCATTCAAAACCACTGAGGATGGGCTGCGCG
AGGCGTTTTCTGAGCATGGAGAGGTTTCGTTTGCCCGTGTCATCAGTGAC
CGAGACACCGGTCGTTCCCGAGGCTTCGGATTTGTGACTTTCACGAACAA
AGAAGATGCTCAGGGGGCTATCGATGCGCTGAACGAAACCGAGCTTGACG
GACGCCCGATCCGGGTGAATTTCGCCCAGCCCCGCGACCCAAATgctcct
cgccgtcctcctcgcagctaccggggccgggggcgcggGCGTGGATACCG
CGGCCCCCGCAatcgtggagaggggggcggagatggtggtggagagggaa
gcgcTGCTCCGGAATCGTAAATGCGCCGTCAGGGATCCTTGTCGGGATTC
AAAGGGATTCCCAAGAGCAAGCCAATGAGTGACGCTGAGGAGGCTGTTGC
GAGTacagcggtggaggagacctctaagaacgaggaggaggccttaAATG
ATgagggaaagctgtACATTGGTAATCTTTCATTCAAAACCACTGAGGAT
GGGCTGCGCGAGGCGTTTTCTGAGCATGGAGAGGTTTCGTTTGCCCGTGT
CATCAGTGACCGAGACACCGGTCGTTCCCGAGGCTTCGGATTTGTGACTT
TCACGAACAAAGAAGATGCTCAGGGGGCTATCGATGCGCTGAACGAAACC
GAGCTTGACGGACGCCCGATCCGGGTGAATTTCGCCCAGCCCCGCGACCC
AAATgctcctcgccgtcctcctcgcagctaccggggccgggggcgcggGC
GTGGATACCGCGGCCCCCGCAatcgtggagaggggggcggagatggtggt
ggagagggaagcgcTGCTCCGGAATCGTAAATGCGCCGTCAGGGATCCTT
GTCGGGATTCAAAGGGATTCCCAAGAGCAAGCCAATGAGTGACGCTGAGG
AGGCTGTTGCGAGTacagcggtggaggagacctctaagaacgaggaggag
gccttaAATGATgagggaaagctgtACATTGGTAATCTTTCATTCAAAAC
CACTGAGGATGGGCTGCGCGAGGCGTTTTCTGAGCATGGAGAGGTTTCGT
TTGCCCGTGTCATCAGTGACCGAGACACCGGTCGTTCCCGAGGCTTCGGA
TTTGTGACTTTCACGAACAAAGAAGATGCTCAGGGGGCTATCGATGCGCT
GAACGAAACCGAGCTTGACGGACGCCCGATCCGGGTGAATTTCGCCCAGC
CCCGCGACCCAAATgctcctcgccgtcctcctcgcagctaccggggccgg
gggcgcggGCGTGGATACCGCGGCCCCCGCAatcgtggagaggggggcgg
agatggtggtggagagggaagcgcTGCTCCGGAATCGTAA
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Synonyms
Publications