EWM26565.1, cds4117 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26565.1
Unique Name	cds4117
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:927717..927848 +
Alignment location	CM002462.1:927921..928048 +
Alignment location	CM002462.1:928232..928325 +
Alignment location	CM002462.1:928429..928584 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26565.1
Product	cold-inducible rna-binding protein
Orig transcript id	gnl\|cribi\|Naga_100084g12.1573.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:927717..927848 +
CM002462.1	supercontig	CM002462.1:927921..928048 +
CM002462.1	supercontig	CM002462.1:928232..928325 +
CM002462.1	supercontig	CM002462.1:928429..928584 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait
IPR000504	RRM_dom

Homology

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|585108650|gb|EWM26565.1| (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 334.724 bits (857), Expect = 5.153e-116
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query:    1 MRRQGSLSGFKGIPKSKPMSDAEEAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRGRGRGRGYRGPRNRGEGGGDGGGEGSAAPES 169
            MRRQGSLSGFKGIPKSKPMSDAEEAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRGRGRGRGYRGPRNRGEGGGDGGGEGSAAPES
Sbjct:    1 MRRQGSLSGFKGIPKSKPMSDAEEAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRGRGRGRGYRGPRNRGEGGGDGGGEGSAAPES 169

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|685853555|ref|XP_009253810.1| (hypothetical protein FPSE_02416 [Fusarium pseudograminearum CS3096] >gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum CS3096])

HSP 1 Score: 107.457 bits (267), Expect = 6.838e-27
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
            KLY+GNLS+ TT+D LR+ FSE GEV+ + ++ DR+TGR+RGFGFVTF+ +E A  A+DALNE ELDGR IRVN A  R
Sbjct:    3 KLYVGNLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDALNEQELDGRRIRVNVANAR 81

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|758205897|ref|XP_011325295.1| (hypothetical protein FGSG_11064 [Fusarium graminearum PH-1] >gi|558867590|gb|ESU17673.1| hypothetical protein FGSG_11064 [Fusarium graminearum PH-1] >gi|596549381|gb|EYB29044.1| hypothetical protein FG05_11064 [Fusarium graminearum])

HSP 1 Score: 107.071 bits (266), Expect = 8.717e-27
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
            KLY+GNLS+ TT++ LR+ FSE GEV+ + ++ DRDTGR+RGFGFVTF+ +E A  A+DALNE ELDGR IRVN A  R
Sbjct:    3 KLYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDALNEQELDGRRIRVNVANAR 81

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|927750518|gb|KPA35631.1| (rna--containing protein [Fusarium langsethiae])

HSP 1 Score: 105.916 bits (263), Expect = 2.333e-26
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
            KLY+GNLS+ TT+D LR  FSE GEV+ + ++ DR+TGR+RGFGFVTF ++E A  A+DALNE ELDGR IRVN A  R
Sbjct:    3 KLYVGNLSWNTTDDTLRTTFSEFGEVTDSIIMRDRETGRARGFGFVTFASEEQANAAVDALNEQELDGRRIRVNVANAR 81

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|1043280814|gb|OBZ68106.1| (Glycine-rich RNA-binding protein 3, mitochondrial [Grifola frondosa])

HSP 1 Score: 106.686 bits (265), Expect = 2.928e-26
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 0

Query:   46 GKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
             K+Y+GNLS+ TT+D LR+AFS +G++  + V+ DRDTGRSRGFGFVTF++ ++AQ AI +LNE ELDGR I+VN A  R
Sbjct:    3 AKVYVGNLSWNTTDDSLRQAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSQEAQTAISSLNEQELDGRRIKVNLANAR 82

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|1049477388|emb|SCB64996.1| (unnamed protein product [Fusarium graminearum])

HSP 1 Score: 106.301 bits (264), Expect = 3.828e-26
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
            KLY+GNLS+ TT++ LR+ FSE GEV+ + ++ DRDTGR+RGFGFVTF+ +E A  A+DALNE ELDGR IRVN A  R
Sbjct:   26 KLYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDALNEQELDGRRIRVNVANAR 104

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|1035383423|gb|OAX39955.1| (RNA-binding domain-containing protein [Rhizopogon vinicolor AM-OR11-026])

HSP 1 Score: 105.531 bits (262), Expect = 4.514e-26
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query:   46 GKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
             K+Y+GNLS+ TT+D LR AFSE GEV+ A V+SDR+TGRSRGFGFVTF + E A  A++ +NE ELDGR +RVN A  R
Sbjct:    3 AKVYVGNLSWNTTDDTLRAAFSEFGEVTDAIVMSDRETGRSRGFGFVTFVSSEIADAAVNGMNEQELDGRRLRVNLANAR 82

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|595776712|ref|XP_007266899.1| (RNA-binding domain-containing protein [Fomitiporia mediterranea MF3/22] >gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea MF3/22])

HSP 1 Score: 104.76 bits (260), Expect = 1.200e-25
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 0

Query:   46 GKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
             K+Y+GNLS+ TT+D LR+AFS++G+V  + V+ DRDTGRSRGFGFVTF+++ +A GAI ALNE E +GR I+VNFA  R
Sbjct:    3 AKVYVGNLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISALNEQEFEGRRIKVNFANAR 82

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|636606641|ref|XP_008034455.1| (RNA-binding domain-containing protein [Trametes versicolor FP-101664 SS1] >gi|392570008|gb|EIW63181.1| RNA-binding domain-containing protein [Trametes versicolor FP-101664 SS1])

HSP 1 Score: 103.219 bits (256), Expect = 2.366e-25
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPR 125
            K+Y+GNLS+ TT+D LR AFS +G++  + V+ DRDTGRSRGFGFVTF++  +AQ AI +LNE ELDGR I+VN A  R
Sbjct:    4 KVYVGNLSWNTTDDSLRSAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSGEAQTAISSLNEQELDGRRIKVNLANAR 82

[Close]

BLAST of EWM26565.1 vs. NCBI_GenBank
Match: gi|1026981864|ref|XP_016609239.1| (hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117] >gi|907095535|gb|KND01200.1| hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 103.219 bits (256), Expect = 2.531e-25
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0

Query:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPN 128
            K+++GNLS+ TT+D L  AFS +GE++ A V+ DR+TGRSRGFGFVTF  ++ AQ AI  +N+ ELDGR +RVN A  R PN
Sbjct:    4 KVFVGNLSWSTTDDTLHSAFSTYGEITDAVVLKDRETGRSRGFGFVTFAGEDQAQAAIQGMNDQELDGRTVRVNLANERPPN 85

The following BLAST results are available for this feature:

BLAST of EWM26565.1 vs. NCBI_GenBank

BLAST of EWM26565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585108650\|gb\|EWM26565.1\|	5.153e-116	100.00	cold-inducible rna-binding protein [Nannochloropsi...	[more]
gi\|685853555\|ref\|XP_009253810.1\|	6.838e-27	63.29	hypothetical protein FPSE_02416 [Fusarium pseudogr...	[more]
gi\|758205897\|ref\|XP_011325295.1\|	8.717e-27	63.29	hypothetical protein FGSG_11064 [Fusarium graminea...	[more]
gi\|927750518\|gb\|KPA35631.1\|	2.333e-26	63.29	rna--containing protein [Fusarium langsethiae]	[more]
gi\|1043280814\|gb\|OBZ68106.1\|	2.928e-26	60.00	Glycine-rich RNA-binding protein 3, mitochondrial ...	[more]
gi\|1049477388\|emb\|SCB64996.1\|	3.828e-26	63.29	unnamed protein product [Fusarium graminearum]	[more]
gi\|1035383423\|gb\|OAX39955.1\|	4.514e-26	62.50	RNA-binding domain-containing protein [Rhizopogon ...	[more]
gi\|595776712\|ref\|XP_007266899.1\|	1.200e-25	61.25	RNA-binding domain-containing protein [Fomitiporia...	[more]
gi\|636606641\|ref\|XP_008034455.1\|	2.366e-25	60.76	RNA-binding domain-containing protein [Trametes ve...	[more]
gi\|1026981864\|ref\|XP_016609239.1\|	2.531e-25	57.32	hypothetical protein SPPG_04290 [Spizellomyces pun...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4127	rna4127	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications