rna412, rna412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna412
Unique Name	rna412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1202
Alignment location	CM002455.1:1022009..1023594 +

Link to JBrowse

Properties


Property Name	Value
Product	subunit of proteaseome activator complex
Orig transcript id	gnl\|cribi\|Naga_100003g73.1873.mrna
Orig protein id	gnl\|cribi\|Naga_100003g73.1873
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1022009..1023594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g73	gene396	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna412	rna412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30356.1	cds412	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1022009..1023594+
coding sequence from alignment at CM002455.1:1022009..1023594+

mRNA sequence

>rna412 ID=rna412|Name=rna412|organism=Nannochloropsis gaditana|type=mRNA|length=1202bp
ATGCGCCGTACTAAGTGGGAGAAGGGCAACTAATGCAAGACTTCTGAGGG
ACTTCAGGCACACTCACTTTTCATATACCTTCACATGAATATTGCAGGAG
AGCAAGAGTGGCAGGGGATTCAAATTTGTGTAGTTGAGCGACACAATTAT
GCTTCCAGCGGTTGCAGGTCGCCTGAGCCGCTCTATTCTGCGCGTTCCTG
CATTTAACAAGGGGCATGCTCTGACACGGGTCACAGGCGCTGGGTTCCAC
AGTGGACGGGCAAGGCTCATGACCAACTACCACCCCACTGCACAACACAA
AGATGAGCCGGGGAACAGCGTGAAGGATGCGTGGGATTTTTCCGAAGAGA
ACTACAAGCGCGTCGATATGATTTTGCATCGGTATCCGACCAACTACAAA
GCTGCGGGAATTATTCCCCTGCTGGACCTTGCGCAGAGGCAGAATGGAGG
CTGGCTGCCCGTGGCGGCGATGGACAAGGTCGCCTCCATCGTGGGGGTGG
TACCGATGCGCGTTTATGAGGTGGCCACTTTCTACACCATGTTCAACAGA
GAGAAGGTGGGGAAGTACTTCATTCAGCTCTGCGGTACGACACCCTGTAT
GGTGAATGGCGCCGAGGAGATCCGAGCCACCATCGAAAAGCACCTCGGCA
TCAAGGAGGGAGAAACGAGCAAAGACGGTTTGTTCACGTTGCGGGAAGTG
GAGTGTTTGGGTTCGTGCGCCAATGCCCCCATGGTCCAGCTGAATGACGA
CTACTACGAATGCCTAACCCCGGCCTCCACCATCGAGCTCTTGGAGGCCT
GCAAGAAAGGGAATCCTCCCAAAATGGGCCGCTGGGGCTCTCTTCCCATG
AATGGACAGGTGTCGTGCGAGGGCCCCCACGGGAAGACGACGCTGAAGGA
ACCGGCGCCTGCCCCCGGATTTATGATGCGAAAGGACTTGGACGGGAACG
TAGACCCTGCGACGGTGAAGCGGGACATGCATTACTAGGAAAAGGGATGA
GGATTCTAGATTGGGGGGGGTTTGGTAAATTTACAAGGTCCGACGTCTCC
CTGGGCCCAGACGCCCAGGATGAGGTTTGTAATACCGATGCCCATCAAGC
GGTGCCAGACAGTGAGGGTCTGATGAAGGAGTGCATAGCTTTGATGATAA
AAGGTGTCCATGCAACACGTAAAGAAATACGATACCAGACTGACGCAGGC
CT

protein sequence of rna412

>rna412-protein ID=rna412-protein|Name=rna412|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MSSNSSNTKAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLEN
DAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIP
AAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVI
ELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFE
DVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKM
AATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMTI

mRNA from alignment at CM002455.1:1022009..1023594+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna412 ID=rna412|Name=rna412|organism=Nannochloropsis gaditana|type=mRNA|length=1586bp|location=Sequence derived from alignment at CM002455.1:1022009..1023594+ (Nannochloropsis gaditana)
tcgcaCCATTCTTTGCTCTTTGGCCCTGACTGACccggccttccttctcg
ctttctccttgcAGTTTCTATTTCCACAACCAAAAAGTATACAGAATAGA
AATTAAAAGATGAgtagcaacagcagcaacactAAGGCTGTCGCtgcgct
ggcggaggagctgaaacAAAAAGGCATGGTGACGTTCAAAGAGGAATTTC
CGGCCAAAATTGCACTTTTGACTTCGCTCTTGGAAAACGAGCTGCTGCGT
TTAGAAAATGATGCGGTGCTTCCCCCAGAATCAGAGGTCACGCCAGTCAT
ACCACCTATTTCAAGTagtgaagagaaaggagaaactTCGGCGGCAGGGG
GCCGGAGAAAAAAGCGGAAAATGACAGAGACCCAGCAGGCAGCCGCTTCC
GTCATACCCGCCGCGCACGTGGACGCTCCGTCACATTCGGACTCAGAGGA
GGAATCGGAGGACGAAATTGGGCACCTAAATGGGCGTCACGGCCATGCAC
ACTGGGACTACACGCATGACTTCGCCGTGCCTTGCAACAAGACTATCATG
AAAGTGATCGAATTGCTTagaaaggaatggaaagaggCGGTTGAGCTGGT
TGGCTGCGTGAAACTGTGGATTCAACTGAGTATTCCCCCCATCGAATCGG
GTGGTCAGTTCCACGTTggggtgcaggaggaggtgattcAGGAGCTGAAT
CGATTCGAGGACGTGGTACGAGGGTCGGCGCGAGGTGGGGGGTTAACAGG
AAATATGCGCCTTGGACTTGGCGTGAATGTGCTCACATAGATTTTTTGAG
CCTGATTTCCTCTCCCGACAACTCCCTCCAGGCGTATAACTACCTGGAGA
GCCCTACCAAATACTTCCAGACGCGAGCCAAGTTGGGGGCGAAGCTGTCA
CGGCACCGGTCCGTGTACGACTACCGGCAGTCCCTACTCGAGGCAGACTC
GCTCGAATACCTCAACCTGAAAATGGCGGCGACAGAGCTGCGAAACTCGG
TGCGTACTTTGGTGGAGCAGCCaggtggagctggaggatTTCGGTGGTGG
ACTCGGGAACGACTCTAGGGCTTTGGCGTGTCTATGTGTGTGACAGGAGA
GACGCCTTTCGGACGCGATTTGCTGGGTTGCGTGGCAGTGGAAAGTGTGC
CAAGGCTCCATTAGATCGTACCCACTATGGGCAACCCGATAGTCCCGCAC
TCAAGTCGCCCGCTGACCGTGCTTTTACCCTTGAATCCTTTacccatccc
cacccccaccatgCGGCTCACAGTACTTGGTTGCCTACGATCTGCTTTCT
AAGAACGAAGACAAACTCTCAATCAAGGACCAAAGCTTTGGCTCCCGCAT
GACCATTTGAAAGAGGTCCGATCGCGCGCAATTTCTTGGTGACGAGAAAG
ATCCCACGTTGTGCCATAAAGAAATTAATCGCAAACTGAATCTCGCGACG
GTTCGCAGCGGACACGGCACCACAATCATGGCGGTGTTGATCAGATTGGG
CCTGGATTTGGCCCTGAAAAGCTCAAATTCTGGGGGCGCACAAGATGAAA
TTAAAGATAAAACCGCGATAGCATCAATTCGTTTTT

Coding sequence (CDS) from alignment at CM002455.1:1022009..1023594+

>rna412 ID=rna412|Name=rna412|organism=Nannochloropsis gaditana|type=CDS|length=2583bp|location=Sequence derived from alignment at CM002455.1:1022009..1023594+ (Nannochloropsis gaditana)
ATGAgtagcaacagcagcaacactAAGGCTGTCGCtgcgctggcggagga
gctgaaacAAAAAGGCATGGTGACGTTCAAAGAGGAATTTCCGGCCAAAA
TTGCACTTTTGACTTCGCTCTTGGAAAACGAGCTGCTGCGTTTAGAAAAT
GATGCGGTGCTTCCCCCAGAATCAGAGGTCACGCCAGTCATACCACCTAT
TTCAAGTagtgaagagaaaggagaaactTCGGCGGCAGGGGGCCGGAGAA
AAAAGCGGAAAATGACAGAGACCCAGCAGGCAGCCGCTTCCGTCATACCC
GCCGCGCACGTGGACGCTCCGTCACATTCGGACTCAGAGGAGGAATCGGA
GGACGAAATTGGGCACCTAAATGGGCGTCACGGCCATGCACACTGGGACT
ACACGCATGACTTCGCCGTGCCTTGCAACAAGACTATCATGAAAGTGATC
GAATTGCTTagaaaggaatggaaagaggCGGTTGAGCTGGTTGGCTGCGT
GAAACTGTGGATTCAACTGAGTATTCCCCCCATCGAATCGGGTGGTCAGT
TCCACGTTggggtgcaggaggaggtgattcAGGAGCTGAATCGATTCGAG
GACGTGGCGTATAACTACCTGGAGAGCCCTACCAAATACTTCCAGACGCG
AGCCAAGTTGGGGGCGAAGCTGTCACGGCACCGGTCCGTGTACGACTACC
GGCAGTCCCTACTCGAGGCAGACTCGCTCGAATACCTCAACCTGAAAATG
GCGGCGACAGAGCTGCGAAACTCGTACTTGGTTGCCTACGATCTGCTTTC
TAAGAACGAAGACAAACTCTCAATCAAGGACCAAAGCTTTGGCTCCCGCA
TGACCATTTGAATGAgtagcaacagcagcaacactAAGGCTGTCGCtgcg
ctggcggaggagctgaaacAAAAAGGCATGGTGACGTTCAAAGAGGAATT
TCCGGCCAAAATTGCACTTTTGACTTCGCTCTTGGAAAACGAGCTGCTGC
GTTTAGAAAATGATGCGGTGCTTCCCCCAGAATCAGAGGTCACGCCAGTC
ATACCACCTATTTCAAGTagtgaagagaaaggagaaactTCGGCGGCAGG
GGGCCGGAGAAAAAAGCGGAAAATGACAGAGACCCAGCAGGCAGCCGCTT
CCGTCATACCCGCCGCGCACGTGGACGCTCCGTCACATTCGGACTCAGAG
GAGGAATCGGAGGACGAAATTGGGCACCTAAATGGGCGTCACGGCCATGC
ACACTGGGACTACACGCATGACTTCGCCGTGCCTTGCAACAAGACTATCA
TGAAAGTGATCGAATTGCTTagaaaggaatggaaagaggCGGTTGAGCTG
GTTGGCTGCGTGAAACTGTGGATTCAACTGAGTATTCCCCCCATCGAATC
GGGTGGTCAGTTCCACGTTggggtgcaggaggaggtgattcAGGAGCTGA
ATCGATTCGAGGACGTGGCGTATAACTACCTGGAGAGCCCTACCAAATAC
TTCCAGACGCGAGCCAAGTTGGGGGCGAAGCTGTCACGGCACCGGTCCGT
GTACGACTACCGGCAGTCCCTACTCGAGGCAGACTCGCTCGAATACCTCA
ACCTGAAAATGGCGGCGACAGAGCTGCGAAACTCGTACTTGGTTGCCTAC
GATCTGCTTTCTAAGAACGAAGACAAACTCTCAATCAAGGACCAAAGCTT
TGGCTCCCGCATGACCATTTGAATGAgtagcaacagcagcaacactAAGG
CTGTCGCtgcgctggcggaggagctgaaacAAAAAGGCATGGTGACGTTC
AAAGAGGAATTTCCGGCCAAAATTGCACTTTTGACTTCGCTCTTGGAAAA
CGAGCTGCTGCGTTTAGAAAATGATGCGGTGCTTCCCCCAGAATCAGAGG
TCACGCCAGTCATACCACCTATTTCAAGTagtgaagagaaaggagaaact
TCGGCGGCAGGGGGCCGGAGAAAAAAGCGGAAAATGACAGAGACCCAGCA
GGCAGCCGCTTCCGTCATACCCGCCGCGCACGTGGACGCTCCGTCACATT
CGGACTCAGAGGAGGAATCGGAGGACGAAATTGGGCACCTAAATGGGCGT
CACGGCCATGCACACTGGGACTACACGCATGACTTCGCCGTGCCTTGCAA
CAAGACTATCATGAAAGTGATCGAATTGCTTagaaaggaatggaaagagg
CGGTTGAGCTGGTTGGCTGCGTGAAACTGTGGATTCAACTGAGTATTCCC
CCCATCGAATCGGGTGGTCAGTTCCACGTTggggtgcaggaggaggtgat
tcAGGAGCTGAATCGATTCGAGGACGTGGCGTATAACTACCTGGAGAGCC
CTACCAAATACTTCCAGACGCGAGCCAAGTTGGGGGCGAAGCTGTCACGG
CACCGGTCCGTGTACGACTACCGGCAGTCCCTACTCGAGGCAGACTCGCT
CGAATACCTCAACCTGAAAATGGCGGCGACAGAGCTGCGAAACTCGTACT
TGGTTGCCTACGATCTGCTTTCTAAGAACGAAGACAAACTCTCAATCAAG
GACCAAAGCTTTGGCTCCCGCATGACCATTTGA

Synonyms

Publications