EWM30356.1, cds412 (CDS) Nannochloropsis gaditana

Overview
NameEWM30356.1
Unique Namecds412
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1022118..1022723 +
Alignment locationCM002455.1:1022840..1023007 +
Alignment locationCM002455.1:1023282..1023368 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30356.1
Productsubunit of proteaseome activator complex
Orig transcript idgnl|cribi|Naga_100003g73.1873.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1022118..1022723 +
CM002455.1supercontigCM002455.1:1022840..1023007 +
CM002455.1supercontigCM002455.1:1023282..1023368 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0008537proteasome activator complex
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009077Proteasome_activ_pa28
IPR003186Proteasome_activ_pa28_C
Homology
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|585113015|gb|EWM30356.1| (subunit of proteaseome activator complex [Nannochloropsis gaditana])

HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MSSNSSNTKAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLENDAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMTI 286
            MSSNSSNTKAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLENDAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMTI
Sbjct:    1 MSSNSSNTKAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLENDAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMTI 286          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|754341754|ref|XP_004364884.2| (proteaseome 28 subunit [Capsaspora owczarzaki ATCC 30864] >gi|765547729|gb|KJE88350.1| proteaseome 28 subunit [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 147.517 bits (371), Expect = 7.783e-39
Identity = 82/272 (30.15%), Postives = 147/272 (54.04%), Query Frame = 0
Query:    9 KAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLENDAV--------LPPESEVTPVIPPISSSEEKGETSAA---GGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKN 269
            K V  L E    +  +   E  P K+A L +++ +++ R+ + ++        LP ES+ T  I  +  +   G ++      G  KKR++ +   A + V  A + ++ +    +    +  G          +  TH   +P NK I +++++L+KE +E   +  CVK+WIQL+IP +E G    VGVQ E + EL + E+  +  L+S +KY+Q RAKL +K+ ++ ++ DYRQS++E D  +Y NL++   +LRN+Y + YD+++KN
Sbjct:   25 KKVDTLRESFTSRAEILVHETMPEKVAQLDAIITSDIFRITDLSLVESPLGIPLPFESDATKDINTLVLATASGSSAGVKLESGISKKRRLEDDDGAPSVVTTATNGESAAKPAFQALDREPRG----------FSTTHTALIPSNKLIQRILDMLKKEIEELFNICNCVKMWIQLNIPRVEGGNNLGVGVQVETVDELGKAEESGFALLDSMSKYYQMRAKLVSKVLKYPTIEDYRQSVVEFDQKQYTNLRVCVLDLRNNYAILYDVINKN 286          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|470475798|ref|XP_004342191.1| (proteasome activator protein [Acanthamoeba castellanii str. Neff] >gi|440799020|gb|ELR20081.1| proteasome activator protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 132.109 bits (331), Expect = 7.459e-34
Identity = 61/135 (45.19%), Postives = 92/135 (68.15%), Query Frame = 0
Query:  139 AVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKL 273
            AVP NK + +V+  +++E    +++   VK+WIQLSIP IE+G  F V +Q + I EL+R ED AY+ LE  TKY+ TR KL +K+ +H  + DY  S++E D  EYLN++++  +LRN+  + YDLLSKN D++
Sbjct:   83 AVPVNKALARVVPAIKEEILAVIDIFNSVKIWIQLSIPRIEAGNTFGVDIQTDTISELSRAEDAAYSLLEGITKYYVTRGKLISKVLKHPEIEDYSLSVVELDEKEYLNMRLSTLDLRNNMAIIYDLLSKNWDRI 217          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|829082559|ref|XP_012647695.1| (proteasome activator subunit 2 (PA28 beta) [Babesia microti strain RI] >gi|399216398|emb|CCF73086.1| proteasome activator subunit 2 (PA28 beta) [Babesia microti strain RI])

HSP 1 Score: 130.183 bits (326), Expect = 5.296e-33
Identity = 64/149 (42.95%), Postives = 100/149 (67.11%), Query Frame = 0
Query:  125 GRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKL 273
            GR G        +  VP ++ I++ +E ++ E  E +E+VG +KLWIQL+IP IE G  F VG+QEEVIQEL R ED A+N  ++  KY+  RAKL  K+ ++ +V DY++++ E D  E+++ K+A  ++RN+Y + Y+LLSKN +K+
Sbjct:   82 GREG--------ELIVPSHRQIVEELERIKDEASELIEMVGNIKLWIQLNIPRIEDGNNFGVGIQEEVIQELARVEDSAFNLFDAIVKYYMARAKLSTKVIKYPNVLDYQEAIRELDEKEWIHTKIAKVDMRNNYSMLYELLSKNWEKV 222          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|749160429|ref|XP_011131843.1| (proteasome activator complex subunit 3 [Gregarina niphandrodes] >gi|608659585|gb|EZG54456.1| proteasome activator complex subunit 3 [Gregarina niphandrodes])

HSP 1 Score: 130.954 bits (328), Expect = 7.914e-33
Identity = 86/274 (31.39%), Postives = 130/274 (47.45%), Query Frame = 0
Query:   14 LAEELKQKGMVTFKEEFPAKIALLTSLL--ENELLRLENDAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMT 285
              EE+ +K +   +E  P K+     ++    E + L N    P + E+  +   I  SE+        G+R + +  ETQ      +P                                +Y +D     N  IMK IE ++ E  E +ELV  VKLWIQL+IP IE G  F V +QE+VI EL+R E+ A+N  +S +KYF  RAKL  K+ ++ +V DYR +L E D  ++  +K+   + RN+Y + YD+L KN  K+     + GS M 
Sbjct:   28 FKEEVTKKALQVLQEIIPRKMKEFDDVMPISAEPMSLMNVQDFPADDEMYRIPNIILLSEKDACVKNENGKRLRTESVETQPGVVMKLP--------------------------------EYIYDAKALSNSVIMKRIERMKTESAELLELVASVKLWIQLNIPRIEDGNNFGVAIQEDVIHELSRVEEAAFNLRDSASKYFLQRAKLITKIIKYPNVEDYRNTLKELDEKQWFQMKVTDMDTRNNYAIIYDMLYKNWHKVVRPRTTDGSMMV 269          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|115814262|ref|XP_790819.2| (PREDICTED: proteasome activator complex subunit 3 [Strongylocentrotus purpuratus])

HSP 1 Score: 129.413 bits (324), Expect = 1.534e-32
Identity = 81/269 (30.11%), Postives = 135/269 (50.19%), Query Frame = 0
Query:    5 SSNTKAVAALAEELKQKGMVTFKEEFPAKIALLTSLLENELLRLENDAVLPPESEVTPVIPPISSSEEKGETSAAGGRRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKL 273
            + + + V A  ++L Q      K  FP KI  L  L+E++L +L   + +     + PV  P+  +   G         KKRK                     H    + +  ++  L G              VPCNK + ++I++L+ +    +E    +K+WIQL IP IE G  F V VQE+ + EL + E  A  YL+  ++Y+ TR KL +K++++  V DYR+S++E D  E++NL++   ELRN+YL  +D+++KN+DK+
Sbjct:    3 NDDPREVTACKDKLHQMSENLVKVLFPQKIGELGELVESDLFKLSRMSEVVCNINI-PVPAPVILNNSDGVDDGLKAHAKKRK---------------------HDSGNDVTGCKVFSLPGG------------TVPCNKELCELIDILKPKICCLIENCNTLKMWIQLQIPRIEDGNNFGVSVQEDTLSELRQVESEAAAYLDQISRYYITRGKLISKVAKYPHVDDYRRSIIEIDEKEFINLRLTCLELRNTYLSLHDVITKNKDKI 237          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|1102623140|emb|CRG99287.1| (subunit of proteaseome activator complex, putative [Plasmodium relictum])

HSP 1 Score: 129.028 bits (323), Expect = 4.139e-32
Identity = 64/153 (41.83%), Postives = 102/153 (66.67%), Query Frame = 0
Query:  134 YTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDK-LSIKDQSFGSRMT 285
            YTH   VP +K I   +E ++    E +E++G +KLWIQL++P IE G  F VG+QEE IQEL R E+ A+N  ++  KY+  RAKL  K+ ++ +VYDY++++ E D  E++++K+   ++RN+Y++ YDLL KN +K +  K++    RMT
Sbjct:  125 YTH--YVPSHKQIYSELEKIKAYASELIEIIGNIKLWIQLNVPRIEDGNNFGVGIQEEAIQELARVEESAFNLYDAIVKYYMERAKLSTKVIKYPNVYDYQEAIRELDEKEWIHIKITIIDMRNNYIMLYDLLYKNWEKVVKPKNEDAHHRMT 275          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|1103663626|emb|CRG96624.1| (subunit of proteaseome activator complex, putative [Plasmodium gallinaceum])

HSP 1 Score: 129.028 bits (323), Expect = 4.228e-32
Identity = 64/154 (41.56%), Postives = 102/154 (66.23%), Query Frame = 0
Query:  134 YTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDK-LSIKDQSFGSRMTI 286
            YTH   VP +K I   +E ++    E +E++G +KLWIQL++P IE G  F VG+QEE IQEL R E+ A+N  ++  KY+  RAKL  K+ ++ +VYDY++++ E D  E++++K+   ++RN+Y++ YDLL KN +K +  K++    RMT 
Sbjct:  125 YTH--YVPSHKQIYAELEKIKAYASELIEVIGNIKLWIQLNVPRIEDGNNFGVGIQEEAIQELARVEESAFNLYDAIVKYYMERAKLSTKVIKYPNVYDYQEAIRELDEKEWIHIKITIIDMRNNYIMLYDLLYKNWEKVVKPKNEDAHHRMTF 276          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|156097164|ref|XP_001614615.1| (proteasome activator complex subunit 3 [Plasmodium vivax Sal-1] >gi|148803489|gb|EDL44888.1| proteasome activator complex subunit 3, putative [Plasmodium vivax] >gi|901863807|gb|KMZ81342.1| proteasome activator complex subunit 3 [Plasmodium vivax India VII] >gi|901873239|gb|KMZ87563.1| proteasome activator complex subunit 3 [Plasmodium vivax Brazil I] >gi|901881948|gb|KMZ93885.1| proteasome activator complex subunit 3 [Plasmodium vivax Mauritania I] >gi|901891375|gb|KNA00528.1| proteasome activator complex subunit 3 [Plasmodium vivax North Korean] >gi|1074116653|emb|SCO66398.1| subunit of proteaseome activator complex, putative [Plasmodium vivax] >gi|1074121929|emb|SCO71832.1| subunit of proteaseome activator complex, putative [Plasmodium vivax] >gi|1105163088|emb|SGX76599.1| subunit of proteaseome activator complex, putative [Plasmodium vivax])

HSP 1 Score: 128.642 bits (322), Expect = 5.683e-32
Identity = 64/154 (41.56%), Postives = 102/154 (66.23%), Query Frame = 0
Query:  134 YTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDK-LSIKDQSFGSRMTI 286
            YTH   VP +K I   +E ++    E +E++G +KLWIQL++P IE G  F VG+QEE IQEL R E+ A+N  ++  KY+  RAKL  K+ ++ +VYDY++++ E D  E++++K+   ++RN+Y++ YDLL KN +K +  K++    RMT 
Sbjct:  125 YTH--YVPSHKQINAELEKIKAYSSELIEIIGNIKLWIQLNVPRIEDGNNFGVGIQEEAIQELARVEESAFNLYDAIVKYYMDRAKLSTKVIKYPNVYDYQEAVRELDEKEWVHIKITIIDMRNNYIMLYDLLCKNWEKVVKPKNEDAHHRMTF 276          
BLAST of EWM30356.1 vs. NCBI_GenBank
Match: gi|1049455254|emb|SBT70853.1| (subunit of proteaseome activator complex, putative [Plasmodium malariae])

HSP 1 Score: 128.642 bits (322), Expect = 6.645e-32
Identity = 63/154 (40.91%), Postives = 103/154 (66.88%), Query Frame = 0
Query:  134 YTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDK-LSIKDQSFGSRMTI 286
            YTH   VP +K I + +E ++    E +E++G +KLWIQL++P IE G  F VG+QEE IQEL R E+ A+N  ++  KY+  RAKL  K+ ++ ++YDY++++ E D  E++++K+   ++RN+Y++ YDLL KN +K +  K++    RMT 
Sbjct:  129 YTH--YVPSHKQIYEELEKIKSYASELIEIIGNIKLWIQLNVPRIEDGNNFGVGIQEEAIQELARVEESAFNLYDAIVKYYMERAKLSTKVIKYPNIYDYQEAIRELDEKEWIHIKITIIDMRNNYIMLYDLLFKNWEKVVKPKNEDAHHRMTF 280          
The following BLAST results are available for this feature:
BLAST of EWM30356.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113015|gb|EWM30356.1|0.000e+0100.00subunit of proteaseome activator complex [Nannochl... [more]
gi|754341754|ref|XP_004364884.2|7.783e-3930.15proteaseome 28 subunit [Capsaspora owczarzaki ATCC... [more]
gi|470475798|ref|XP_004342191.1|7.459e-3445.19proteasome activator protein [Acanthamoeba castell... [more]
gi|829082559|ref|XP_012647695.1|5.296e-3342.95proteasome activator subunit 2 (PA28 beta) [Babesi... [more]
gi|749160429|ref|XP_011131843.1|7.914e-3331.39proteasome activator complex subunit 3 [Gregarina ... [more]
gi|115814262|ref|XP_790819.2|1.534e-3230.11PREDICTED: proteasome activator complex subunit 3 ... [more]
gi|1102623140|emb|CRG99287.1|4.139e-3241.83subunit of proteaseome activator complex, putative... [more]
gi|1103663626|emb|CRG96624.1|4.228e-3241.56subunit of proteaseome activator complex, putative... [more]
gi|156097164|ref|XP_001614615.1|5.683e-3241.56proteasome activator complex subunit 3 [Plasmodium... [more]
gi|1049455254|emb|SBT70853.1|6.645e-3240.91subunit of proteaseome activator complex, putative... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna412rna412Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications