rna4116, rna4116 (mRNA) Nannochloropsis gaditana

Overview
Namerna4116
Unique Namerna4116
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1482
Alignment locationCM002462.1:898958..899702 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100084g23.1556.mrna
Orig protein idgnl|cribi|Naga_100084g23.1556
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:898958..899702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100084g23gene3961Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4116rna4116-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26548.1cds4106Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4116 ID=rna4116|Name=rna4116|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp
GGAGCACACGATCGCCAGAAATGAAAACCGTATTATATATATACATATAC
AACCCTAACCCTAACCTCAGAACACGGTAGACTAGCAGACAATCGTAAAA
CTACAAGATCGATCGAATTAAATCTGTATTTGGGCTCGACGCCGGGCGCC
CTTGGTTGGCATCCTTTTGCGTTAAATTTGCCCGCTTCTGCTGTGCTCCC
ATGCTCCCACCCATTTCCACCCACCTTCACCTTCTTACACTTCGTCAGAG
AAAAATGGCCATTTTTCTCCGGGCTCCGAAGAACTCCGCAAGTGATTTCG
GTTGTGTGGGTCTATCTATATCGTGTTGTCCGGTCCTATCTCGGCGTTCT
CGGGCCACTCTGCAGTCCCTCTTATTTACGCCGGACGGGCGGGAGGGGGG
CCGGGCTCGGTGTACATATGGCCCGATTAACCAGACTAGCCGCTACCGCC
GTAATTTTATAGCCAGTAAACGTCGTGAGACGCTGGTTGCTTGTTGAAAA
TATTGGAAACCAGCTTAAGTTATTTATTTCTTTGTGGTTCAGGTCGATCT
TGTCGCCATCACGCTGTTTTCTGACAGATTTTCATGAGAGCCTATTCTTC
TACGAGTTGCGCCTTACAATGTGTGCCCTTGTTGTGACTTTGTGTCCTCC
ATTCGTGCGCCTACTTGTGTGTGTAACGCTTCAATTCAATTACCTCTATT
CATGCAACTACCCGTGTGTGTAATGCTTTAACTCGTGCAAGAGGGCTTCA
ATGGCTGCAGCAATTTTGCGGATATATTTATTTGCGATGTGGGTGCCGTG
GCGTCGGCGAATAAACACCGCATACCCCTCCTGCCGTGTGCGCTCCTCCT
TCTACTCTCCCCCGTCTTCTGTCACGGCTGAGGCCCATCAAGAGACCGGG
CTGACACCGACGTGCATCTCCAATCGATCTAACAAAACGTCCGTGCTCAG
ACGCACCACCCCGTCGCTTTCCTCCGCCTTGGCCCAGGCAGGCATCTGCG
CTAAGGCGCTTTTGAAGTCCTGTATTTCCCGGCACAGCGCCCCTCGCAGC
GCGGTCAGTCGCTCCACGTCCCACCCCTCCGTACCCTCTCTCAGCGCTTG
CCCCAACGCGGCCAGGCGCGCGGCGGACAGAGGAAGTATCCGGACCTGTG
GCGAGACCACTTTCGCCGGCTCGGCCTCTTCGGGCCTCTTGGCTCCCACC
TCGCCGTCGCTCGCCTCGGTTCGAGACCCCTCCTCTCCCGCCTCCACCGC
CCCGCCGTCCTCCTCCCCCTCCTCCTTCTCCGCTTCCGACAAAAAAAGTG
CGAGAGAGGAAGAGGAAGTGGAGTGCCTCATGCTGGGCTTGGCCTCCAAC
TCCTCCCCCTTTCCTTTCCCCTCCCCCTCCTCCTCCTCCTCGTTCACCTC
CTCCTCGTCCACCTCCTCCTCCTTTTCCCCCTTTCCTTCCCCCTCCTCCT
CCTCGTCCGGATCCCTCTTATGCAAGCTATAG
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protein sequence of rna4116

>rna4116-protein ID=rna4116-protein|Name=rna4116|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MGPGGHYPAAMYGGMGMGHPGMGGRGGRGGRTPKGDRGRGGFLGGGKGLA
GGPGRGTAKARGSGHMGVPHGYIPYQQQSSPQVAPGPGANGPAASQAPPS
PAAHEHDVVPPISPSGKGFEPTGRPAPAQGASSAQPPTSSTYRTSSVTDS
AEAVKSSGTPASDSGSK
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mRNA from alignment at CM002462.1:898958..899702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4116 ID=rna4116|Name=rna4116|organism=Nannochloropsis gaditana|type=mRNA|length=745bp|location=Sequence derived from alignment at CM002462.1:898958..899702+ (Nannochloropsis gaditana)
ATGGGGCCGGGAGGACACTACCCCGCGGCGATGtacggagggatggggat
ggGTCATCCGGGTatgggcgggcggggaggacgaggagggcggactCCCA
AGGGTGACCGGGGTCGTGGAGGCTTCCttgggggcggaaagggccTCGCG
GGTGGCCCGGGAAGAGGCACTGCCAAGGCACGAGGGAGCGGGCACATGGG
CGTTCCCCACGGGTATATCCCCTACCAGCAACAGTCTTCGCCGCAAGTGG
CCCCCGGGCCTGGGGCCAACGGACCGGCGGCCTCGCaggctccgccctcc
ccggccgcCCACGAACATGATGTGGTGCCACCCATATCCCCTTCTGGGAA
AGGCTTTGAGCCGACGGGCCGTCCTGCGCCCGCGCAGGGAGCATCTTCAG
CCCAgcctcctacctcctccacctaTCGCACTTCTTCAGTCACGGACTCT
GCCGAGGCTGTGAAGTCGTCGGGAACGCCTGCCTCGGATTCAGGGAGTAA
GTGATGGATACATTTGGTGGGGATGGCTGGAACCCCGGGACGAGAGGGGC
GCGCAACACAAGTTGGGGTTGCGGTTGCATAGTCTTATAGATGCTATGGT
GTAATATGTATCGAAatgtggagggatggaaaaactggaggcgcaggaga
ggaggtccgACGAGTCGTTGGAGGTCGTAGGCACCGTAGTAACTGATGAA
AAACATAAGTGCACCAGAAACAAAAAGAGATCTGCGCCTAGCTTT
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Coding sequence (CDS) from alignment at CM002462.1:898958..899702+

>rna4116 ID=rna4116|Name=rna4116|organism=Nannochloropsis gaditana|type=CDS|length=504bp|location=Sequence derived from alignment at CM002462.1:898958..899702+ (Nannochloropsis gaditana)
ATGGGGCCGGGAGGACACTACCCCGCGGCGATGtacggagggatggggat
ggGTCATCCGGGTatgggcgggcggggaggacgaggagggcggactCCCA
AGGGTGACCGGGGTCGTGGAGGCTTCCttgggggcggaaagggccTCGCG
GGTGGCCCGGGAAGAGGCACTGCCAAGGCACGAGGGAGCGGGCACATGGG
CGTTCCCCACGGGTATATCCCCTACCAGCAACAGTCTTCGCCGCAAGTGG
CCCCCGGGCCTGGGGCCAACGGACCGGCGGCCTCGCaggctccgccctcc
ccggccgcCCACGAACATGATGTGGTGCCACCCATATCCCCTTCTGGGAA
AGGCTTTGAGCCGACGGGCCGTCCTGCGCCCGCGCAGGGAGCATCTTCAG
CCCAgcctcctacctcctccacctaTCGCACTTCTTCAGTCACGGACTCT
GCCGAGGCTGTGAAGTCGTCGGGAACGCCTGCCTCGGATTCAGGGAGTAA
GTGA
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Synonyms
Publications