rna4107, rna4107 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4107
Unique Name	rna4107
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1836
Alignment location	CM002462.1:867596..868328 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g5.8166.mrna
Orig protein id	gnl\|cribi\|Naga_100001g5.8166
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:867596..868328 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g5	gene3951	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4107	rna4107-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26655.1	cds4097	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:867596..868328-
coding sequence from alignment at CM002462.1:867596..868328-

mRNA sequence

>rna4107 ID=rna4107|Name=rna4107|organism=Nannochloropsis gaditana|type=mRNA|length=1836bp
ATGCACGCCCCTGAGAATGCAGATGCTATAGAAGGCTGCTTAATGGCAGC
CTGTAAAGGCCTCGACTTAAGTGTCGCAGAATTATGGCGCCGTGAAAATC
GAAGCGGCTTGCATTTTTTATGTTTGCATGTGACGGCATCGCCATCCGCT
TTAGAATCCTACAGTTCCTACCTCCTGGGCAAGGCCGCTCAAGCTCGGAA
GCATTCACTCAGTCCTCAATTGTGCGAAAAAGGCCTGCGGCAAAAAGTTC
CTCTATGGTATACGGCGGCAGAGCCGGACGCCGCCATCCACGCAACCATA
CCCATCAAGACGGCCATCGTCCTCCCTACCTTCTCGTACGAAATCCAACA
AGAGTTTTACGTCTTGTTCTTCTCGTTTAAGCACCTAACTCCCTCTTCGT
CCACCATCTCCTTCCTGCGATACCTGAGCAAGGCAACGGTGGTGGCCTGC
GGAGCCTCTCTCGTCAAGTCCATCGTCGACGCAGTGCACGCCCCTGCCCT
CTCGCAAGAAAAGTTTAACGAGGTGCCTGTCGTCTGCGCCAAACCCGAGC
TGCCCAATATGTTCGTGCAGTGGACTGATTTGCACCATGTCGAGCGCTTG
GTCGATGGCGGGACCTCCGTCGTGTACACCGCAACCTACAACCGCCTGCC
CGTCATCGTCAAGATCCTCAAGGAGGACTGTGAGCGGAACGAGCTTCGGC
TCCGGGAGATCCGGGGGGAGATCGAGCTCATGCAGTCCCTCAACCACCCA
AACATCGTGCAGTACATCGCCAGTGGTTGGGAACCGCGGACGTTTGTGGT
CATGGAGAGGCTGGAAGGGGGCAGCTTGAACCAACGGCTGGGGTTTGCCC
CTACACACAGTGGGGTGCATCGCAACAATTTTTTCACACGGGATGTGCGG
AAGGCCTTTTCCTACGAAAGCTTGTTGAAGTACGCGCTGCAAATGGCTGA
GGCGCTCAAATACATGCACGATGAGGCGTTACCTGGTTATGCAGTCATGC
ATCGGGATTTGAAGCCGGACAATGTGGGCTTCAAAGCAGACGGGACATTG
AAGATACTGGACTTCGGCCTGGCTAAAGCGATCCCAAAGGACGAGACGGC
GCGGCAGAAAGTCCGGATGACGGGGGAGACGGGCAGTATCCGCTATATGG
CTCCCGAGGTGGCGCTACACAAGCAGTACAACCAGAAGGCGGACATCTTC
TCCTGGTCCTTCATCGTGTGGGAGATGGCGACGCTGACAAAGCCCTTCGA
GGGCTATACCAAACACGATTTTTTCACAAACGTGGTAAAAGGCGGGGAGA
GGCCGCCCTTGAACAAGCGATGGCCGAAAGAGTTCGCGGAGCTCTTGCAG
GCTTGTTGGGACACAAACCAAAACAAGCGACCAGAAATGGCGGAGGTCTG
CGAGGCACTCAAGGTGGGTGGTGGTCCTGCTGGCCGGGGTGGAAGAGCGA
AGCAAGAAGGCGCGCTTCTTCCTACTTATGGACAGACGCAGCACCTGGTT
CTGATTGTCGGTCGGCCTCGCTTTTCTGGTCAACATTCTTTGTACAATCT
TTCCTTTGGAATCGCTTGTCTTCACCTGTGTCCAGGTCAAGCCTCCCAAA
TGCCGATGCATACCTCCCAATCAATGTCCGAGACGGCCACTCCCTTTCGA
TTAGAAATCCTCGAACACGCCCAACATTTCCCTCCCAACGATAAGGGTAG
GGGTCATGTATACCGGGTGGCGGTGCATGCAGAGCAGGGGCTAATAAAGG
GAGGCACCGAACTAATAAAAGGTAGGAAGAGATGGAACGGGTCAGGACAA
GCATTCTGTAAGGTCTCGGATGAGTGGGCTCCGTAA

protein sequence of rna4107

>rna4107-protein ID=rna4107-protein|Name=rna4107|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MFFKNQPSSSPAYRMAAWGVAIVGLVAWTYWDQKKETDTRFTSEEAAKWN
ERVKGKTKARAAQPPTDGGKPSAP

mRNA from alignment at CM002462.1:867596..868328-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4107 ID=rna4107|Name=rna4107|organism=Nannochloropsis gaditana|type=mRNA|length=733bp|location=Sequence derived from alignment at CM002462.1:867596..868328- (Nannochloropsis gaditana)
TCTGGATGAATGCTTTGCATGGCTGTCTTGCTTCAAGTGCACGGGCTTTC
ACGCTTGGGATTGTCGAATGATCGTACGAGACGTTCGACCGAATAAACCT
CCCAGCCCCCAATTTTCCCTTTTCAAGGTCAACTGCAGTAGTCTGATCCG
AAACACATCGACCAAAAATGTTTTTTAAGAACCAGCCCTCCTCTAGCCCA
GCCTATCGTATGGCCGCTTGGGGTGTGGCAATTGTGGGGCTAGTAGCTTG
GACGTACTGGTAAGCATGTGTTGCCTACCGGTCGAGGACACCTATGGCAC
GCTGAGAGGTGCTCGCTACTGGAAGCTTACTATCTCTATACAACATCTTC
AGGGACCAGAAAAAGGAAACAGACACGAGGTTCACCAGTGAGGAAGCTGC
CAAGTGGAATGAACGTGTTAAGGGCAAGACGAAGGCGCGGGCAGCGCAAC
CTCCAACCGACGGCGGAAAGCCTTCCGCACCGTGAGAATACGTAGTAGGC
ATGAGTTTAAAAAAACAACGTAGAACGAGGTCTTGCTGTATTTTAACTGT
TTCGCCGTTGCAGAGCGCACTTTTCAATATGTGTGTTTCTCGATTGCTGT
GTACATCGTGCTCGCCACAAAAGTAAAAGGAAAGTCACCAGCAAGGTCTC
ATCCCTTTCATTTTCACATCGCGATCAATTTATTTAAGGGCCTAGCCCTA
TTCATATAAAGTGTCCAATTAAATACAGACATT

Coding sequence (CDS) from alignment at CM002462.1:867596..868328-

>rna4107 ID=rna4107|Name=rna4107|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002462.1:867596..868328- (Nannochloropsis gaditana)
GGACCAGAAAAAGGAAACAGACACGAGGTTCACCAGTGAGGAAGCTGCCA
AGTGGAATGAACGTGTTAAGGGCAAGACGAAGGCGCGGGCAGCGCAACCT
CCAACCGACGGCGGAAAGCCTTCCGCACCGTGAATGTTTTTTAAGAACCA
GCCCTCCTCTAGCCCAGCCTATCGTATGGCCGCTTGGGGTGTGGCAATTG
TGGGGCTAGTAGCTTGGACGTACTGGGACCAGAAAAAGGAAACAGACACG
AGGTTCACCAGTGAGGAAGCTGCCAAGTGGAATGAACGTGTTAAGGGCAA
GACGAAGGCGCGGGCAGCGCAACCTCCAACCGACGGCGGAAAGCCTTCCG
CACCGTGAATGTTTTTTAAGAACCAGCCCTCCTCTAGCCCAGCCTATCGT
ATGGCCGCTTGGGGTGTGGCAATTGTGGGGCTAGTAGCTTGGACGTACTG

Synonyms

Publications