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Properties
| Property Name | Value |
|---|
| Product | zinc finger protein |
| Orig transcript id | gnl|cribi|Naga_100001g10.8246.mrna |
| Orig protein id | gnl|cribi|Naga_100001g10.8246 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:855413..857346 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4101 ID=rna4101|Name=rna4101|organism=Nannochloropsis gaditana|type=mRNA|length=3383bp
CCTCCGTCTCGGTCGTCATCAGCCCTCGCCAACCGAAGGGACCTATTTCA
TCACATGGCCTCCCTCACCATCGTCATCCGGGCTCGCTTTCTTTTGATTT
TCTGGTCGTGAAAGCTTCAAGACTCGCCTAAAGAAGCAGGAATTTCCAGT
CGTAAATGACTCTGACCTATCCTTTCAAACACTATCGGGGACACAAGTAT
AGGGTGACAATGTCGGCCAGACGACGCAACAGCCCCAGCGTCAGGAGCAG
CGTTGACAGCACACCGACACCCTCTCCTCGTCGCCTTGGTCTCAGGGCTC
GAGACTCGGGTGCATACGATTTGGGCTTGATGCAGCAAGGTGATGAAACA
TCTGGGAGCGAAGCGGGTCGTGATGCGCCGCTGTTTGCACTAGAGGAGAT
GGAGGGTGAAAAAATCAAGGCCAGTCATGTTTTGGGCACATTATTTGTTT
TCGCAGTTTTCAGCATGCTGGCCTACCTCATGTTTCCTGGGGTATTAAAT
GGCGACGTAACCAATTCTCTAAGTACATGCGGGATCGCGCTCTCTGATGG
CAATGGAGATTCAGTGGGAAAAGGATTGGATGTGGGAAAATTGCCTTTCG
ATTGGATGGCTGATCCTGCCGTGCAAAGTATGGTAGAACGCTTTGTCGAA
GAGCGCTTGGAGACGTACAACGAAACAACGAAGTACCTGAAGGAGGGCTA
TTTAAACCTGACACAACTAATGGAGAGTTTGAGGAAAGACCAAGACATGT
ATTCTGACATAAAAGGGGAAGCCGAAAGTGTTGCCGGTTCGGGTCAGGAA
GCGACACTTAGAATGCTTCGAGACCTTCAAGAGCTAAAAACAAATCTTGA
ATCTCAACAAACCGAGCAGCATAATCAACGTGTGCATGAACTGGAGGGCC
TGATGGCGGACTATGAGGCTATTAAAGCGCAGGTAGAGCACAATTTGCAG
GCAGTCCAAGAAAAGACGGAGGGATTGGAGGCACGCATGCGCCACGAGGC
GCACGAGACGTCCGCCCTGGAAGAGAAGGTCGCGGCCTTGTCCCTGAACG
TGAGTGCGTTGGAGGACTCGACAGCCCGGGGGATGGACGATTTGACCTCG
GCTCTACGCGGACTTCAAGTCGAGGAGACGGAAAAGCTCCTCCTCCAAGC
GCGCGAGACGACCGCCTCCCTGGGGTCACGCGTCCAAGACATGAAAGACG
AGCAGACGAAGTTGCAGGCGGCAAAAGAGGCCTGGGGATCACACAAAGTC
GCGGCAGAGGACGAGGCGAAATCTCTGCTCAGTCAGGTGACGGAGGCGCG
GGAAGAACTGGCTCGTTTGGTGTCACAGTCCCAGCTGGAAATGGAGGGCT
TGCAGAGGTCCCTGCAGGCAGCCGGCGATCATGCCCTCAGCCCGGAGGAC
TCCCTCCCAAAAGAGACCGTGGAGGCCGTCCACACCGTCTCTTTAAGCGT
GAGTACGCAGCTGTCGGAGTGGAAGGGCATCATAGCCGCCACCCTAGAGT
CGAACCGTCTCCTGACCGCGCATAAAGCGGAAGTGGAGTCGAGGATGCAG
GAGGCACAAAAGATTCTGGAAACTATTGAAAGCACCGCTGCCGATGCAGC
GGCAGCAATGGCGGCGGCGAAAGCGGACGTGAAGGAGGGAGGCTTCGAGG
GGCGGTCCGAAGTGGTGGAGCGTTTGGAAGGAGAGCTCGAGTCCCTGAGG
AACGGGCAGGCGACGCTCGCGGCAGCCGTGCAACGGAGTTTTGAAATGGT
GCAGCAAGCTCGTTCTGGCATGGCGATAGAGGCAGAGAAGGCGAGTGGAG
GAGAGGAGGCGGCCGGTTCGGCTGTCTTGGCGGGCGTCACCGCAGAGGAT
GTCAAGCGATGGGTCCGGGAAACGCTCTCGGAGGGCCAGGCGCTGCAGGA
CCAGGCAGGGGAAGAGGTCTGTGCGCCAGAATCTGTCGCCTCCCTGGTGG
AGAGGACCGTCCGTCTGTACGAAGCCGACGCCGTGGGACTGGTTGACTAC
GCCGCGGCTACCGCGGGCGGGAAGGTCCTTCCCTCCCTCTCTTCGGCTAC
CTACACCCCTCCCGGACAGCTTCTGAGCACAGACACCTTCCACGCCTGGG
GCTTCAAGGCGGAGATTGGCACCCGCGACCTGGTCATCCGCGCTGGGCAC
AAGCGTCCCGGGCAATGTTGGCCCATGGCAGGGAGCAGGGGGCAGGTGAC
GGTGCAGCTCCTCCAGGCGGTTCGACCGTTTTCGGTGTCGCTCGAGCACA
TTCCCCCCGAAATCTCCCAGCTTCCTTCAACGGCCCCGCAACGGTTCCGT
GTGCTCGGGCGGAAGGTGGGCCAGGCTGCTGAAAGCCCCGTGGTCCTACA
CAGTCAAGAATATCTGACGTACGAGATGCAGGGACCCCGCCCGGTGCAAA
CATTCCCCTTGGACCTGGGGGGGGGGGCGAAGGGGTGCGAGCGGTGACAT
TGGAGGTGCTTAGCAATTGGGGCTATGCGGAGTACACGTGCTTGTATCGT
TTCAGGGTACACGGGGAGGTGGTGGGAGAGAGGGAGGCGGTGGTGATGGG
CAGGGAAGAGGGGAGGGGGGAGGAGCGCGAGGACACCGAGAGCGTGGAGA
AGGAGGCGGAACAAGCGGTGGTGGAGGATAAGCAGGGAACAGCGATGAGA
GACGGGCAGGCGGAGAGTGTCAGGGACGGAGGGGATCCTGACGGGTCAGT
GGAGGGGGGGGACGATAGAGAGGGAGGGACGGCATGGGAGACAGCGGGCG
CGGAGGGGGAAGAGAGTGAGGTGGTGGCTGCCAGGGAGGATGAGCAGAAA
GACGCACAGGAGGTGGTTTCCATGGTCGAAGGGATCGAGGATGCAGAGAA
TGGAGGGAGGATGCAGAGAATGGAGGGAGGATGAGGACAGAGGGACATGA
GGAGGACGTGGTGGAGAGGGCGACCTCCGCGGCGGAAGGGAAGACGCTGG
AAGAGATCGTGTGAACTGCACAGAACTGTAAGGATCCGGCAATCAATGCA
TGGATGGCGCCTTGAGGGGACTGTGGGCCGAGGGAGGAGAGCGTTATTAC
GGGAGTGGGCGGTCTCTTTTGCGTGACGCCCGTTACGGGCAGGCCAGTAA
ATATAAATTTGGACACGTGCGTGAAAATGAAGACGGTCGAACAAACACAA
GTCGCCATTCAATCCAACGCAAAAGTCACAGCGAACGCACGGCAGATCAA
AGCCCCCCAAAATAACAGCATCGCACCGTCGATTGCGAGATATAGGAAAG
CCTTCTTTGTGTGCCTAGGAACATTTCTCTTCCTCCTCCCAAACTGCCTC
TTGTCGGGGCATGGCGTTTGCGAACGTTTTAAGTGAATGTGGACATTTTC
CCGTGCATGTATTTCTACATTTGGCTTACCCCG back to topprotein sequence of rna4101 >rna4101-protein ID=rna4101-protein|Name=rna4101|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MMENDLSIEPSCPPQFVASIEGNQALERDHRIRRQHIHRKISCFLQDCRC
EDRLSLARPLFKKSPRWKNKHFKCQLCPRKLTSASGMVIHVTQVHKETLK
KIPGAKEGRDSVDVEVFGMQGIPMECLMERAAKKQRTGGDPGGSHGEANG
GGMPGLPPGMGPGMGMGAGFPPGMGGPPGPNGMYGQMPNFPPQQGGVFGG
YGMGGFPPRPMSGPPGMFPPAGRMMMPHQGGMPPGMYPFPPGQQAPQGFP
RSQPGMPPLPALGSAPLGPGGYVPGQHQQQQHSTQEPRHPHQAPQPSQPG
QSSPSQPHHQQHPQHYQPQQPQPYQQGIPPMPPGQAPPRPGVFPPGPPPG
LPPGAPPRPLFPVAGFAPAPPATSSPTVSAAPSGTQHPATETTAVATKEM
NLVYAEESESMEERRAKLPKYFYDEKVVLAGSGS back to topmRNA from alignment at CM002462.1:855413..857346+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4101 ID=rna4101|Name=rna4101|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp|location=Sequence derived from alignment at CM002462.1:855413..857346+ (Nannochloropsis gaditana)
GATATGATGGAAAACGACCTTTCCATTGAGCCGTCGTGCCCACCACAATT
CGTCGCGAGCATCGAAGGGAACCAGGCACTCGAACGCGACCATCGAATAC
GCCGGCAGCATATACACAGGTCAGCGTGAAGGGAGGATAGAGTGAATGTG
TGATTGTTTCGGCTATACGGCAGAAGCTGGATGAACCTGAGGCTCGTCAG
CCCTTGAACGTCACTGGAGACCTTCGGGTAGAAAGTCAGACCCTTGTACC
ATTTATGAATATAGCCATTCCGACCAGTTTTCATTTAATACTAACCTTTA
TTTCCTTCGTTTGGTTATATCAACGTACTTTATACGCCATGAGCAGGAAA
ATATCTTGTTTTTTGCAGGATTGTCGCTGCGAGGATCGGCTTTCTCTAGC
TAGACCTCTCTTCAAGAAAAGTCCACGATGGGTAAGAAAAAGTCAGCCAC
CAaacgggaggaagcgcccgaCATATGGTGCTACTACTGCGATCGCGCCT
TTGATGACGAGGctacccttctcctccatcagaAGAACAAGCATTTCAAG
TGTCAACTATGTCCTCGCAAGCTTACTTCGGCAAGTGGAATGGTAATTCA
TGTGACACAGGTACACAAAGAAACGCTAAAAAAAATACCCggtgcgaagg
aaggaagagattCTGTGGATGTAGAAGTCTTCGGCATGCAGGGTATTCCC
ATGGAATGCCTCATGGAACGCGCCGCCAAGAAGcagaggacaggagggga
tcCAGGGGGCTCTCACGGAGAGGCTAACGGTGGAGGAATGCCGGGCTTGC
CGCCCGGTATGGGCCCAGGGATGGGTATGGGAGcaggctttcctcccggA
ATGGGAGGCCCTCCGGGACCCAATGGTATGTACGGACAGATGCCCAATTT
CCCAccgcagcaaggaggagtcTTTGGCGGGTACGGCATGGGGGGTTTCC
CGCCCAGGCCGATGTCAGGGCCGCCGGGCATGTTCCCTCCAGCAGGCAGG
ATGATGATGCCCCATCAAGGGGGAATGCCTCCGGGCATgtatccctttcc
cccgggccAGCAGGCCCCTCAGGGATTCCCGAGGAGCCAGCCGGGGatgc
cgcccctccctgccttgggATCGGCCCCCTTGGGGCCGGGCGGGTACGTT
CCTGGGCAGcatcagcaacagcaacattCCACGCAGGAGCCGCGTCACCC
CCACCAAGCACCACAACCGTCCCAGCCGGGGCAATCCTCACCATCGCAAC
CTCATCATCAACAACACCCGCAGCATTACCAACCCCAGCAGCCGCAACCA
TACCAACAAGGCATACCTCCCATGCCCCCCGGGCaagctcctccccgtcc
aggAGTGTttcccccgggcccgcccCCTGGTCTGCCCCCAGGCGcccccc
ctcggcccctcttccctgtTGCTGGCttcgcgcccgcccctcctgcgACC
AGCTCCCCTACAGTGTCGGCTGCCCCCTCCGGGACACAACATCCAGCGAC
CGAAACGACGGCAGTGGCCACCAAGGAGATGAACTTGGTGTACGCAGAGG
AGTCAGAGTCCATGGAAGAACGGCGGGCCAAGCTTCCCAAGTATTTCTAC
GATGAAAAGGTCGTTCTTGCGGGAAGTGGGTCTTAAGAACGACGAGTTGA
AGCGAGCGGAAAGGGTTGATGTCAGGGGGCTTGCGGGAGATTGGCACAGG
GGAAGAATGAACTTTTCCGCTCAACAGCAGCTCTTCTTTTTTGAAAAGTC
GCCATTTTGTCTCAGGCTTTGCTTCACATATGAGACGCCTACACTGGCAC
TGGTGCTGTGTGCAAATAAAAGGAGGAAACCATAAGGTCTGTTCCTTTTT
TAACCATGATAAAGCGAGACGATGTCCTTCGCGCCTCCAACTCGTGAACT
GAAGACAGAAAAATCGTTGTATGGACTTGAGCCA back to topCoding sequence (CDS) from alignment at CM002462.1:855413..857346+ >rna4101 ID=rna4101|Name=rna4101|organism=Nannochloropsis gaditana|type=CDS|length=3915bp|location=Sequence derived from alignment at CM002462.1:855413..857346+ (Nannochloropsis gaditana)
ATGATGGAAAACGACCTTTCCATTGAGCCGTCGTGCCCACCACAATTCGT
CGCGAGCATCGAAGGGAACCAGGCACTCGAACGCGACCATCGAATACGCC
GGCAGCATATACACAGGAAAATATCTTGTTTTTTGCAGGATTGTCGCTGC
GAGGATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAAGTCCACGATG
GaAGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAGCTTACTTCGG
CAAGTGGAATGGTAATTCATGTGACACAGGTACACAAAGAAACGCTAAAA
AAAATACCCggtgcgaaggaaggaagagattCTGTGGATGTAGAAGTCTT
CGGCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGCGCCGCCAAGA
AGcagaggacaggaggggatcCAGGGGGCTCTCACGGAGAGGCTAACGGT
GGAGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGATGGGTATGGG
AGcaggctttcctcccggAATGGGAGGCCCTCCGGGACCCAATGGTATGT
ACGGACAGATGCCCAATTTCCCAccgcagcaaggaggagtcTTTGGCGGG
TACGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGCCGCCGGGCAT
GTTCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGGGGAATGCCTC
CGGGCATgtatccctttcccccgggccAGCAGGCCCCTCAGGGATTCCCG
AGGAGCCAGCCGGGGatgccgcccctccctgccttgggATCGGCCCCCTT
GGGGCCGGGCGGGTACGTTCCTGGGCAGcatcagcaacagcaacattCCA
CGCAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTCCCAGCCGGGG
CAATCCTCACCATCGCAACCTCATCATCAACAACACCCGCAGCATTACCA
ACCCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCCATGCCCCCCG
GGCaagctcctccccgtccaggAGTGTttcccccgggcccgcccCCTGGT
CTGCCCCCAGGCGccccccctcggcccctcttccctgtTGCTGGCttcgc
gcccgcccctcctgcgACCAGCTCCCCTACAGTGTCGGCTGCCCCCTCCG
GGACACAACATCCAGCGACCGAAACGACGGCAGTGGCCACCAAGGAGATG
AACTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAACGGCGGGCCAA
GCTTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCGGGAAGTGGGT
CTTAAATGATGGAAAACGACCTTTCCATTGAGCCGTCGTGCCCACCACAA
TTCGTCGCGAGCATCGAAGGGAACCAGGCACTCGAACGCGACCATCGAAT
ACGCCGGCAGCATATACACAGGAAAATATCTTGTTTTTTGCAGGATTGTC
GCTGCGAGGATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAAGTCCA
CGATGGaAGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAGCTTAC
TTCGGCAAGTGGAATGGTAATTCATGTGACACAGGTACACAAAGAAACGC
TAAAAAAAATACCCggtgcgaaggaaggaagagattCTGTGGATGTAGAA
GTCTTCGGCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGCGCCGC
CAAGAAGcagaggacaggaggggatcCAGGGGGCTCTCACGGAGAGGCTA
ACGGTGGAGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGATGGGT
ATGGGAGcaggctttcctcccggAATGGGAGGCCCTCCGGGACCCAATGG
TATGTACGGACAGATGCCCAATTTCCCAccgcagcaaggaggagtcTTTG
GCGGGTACGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGCCGCCG
GGCATGTTCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGGGGAAT
GCCTCCGGGCATgtatccctttcccccgggccAGCAGGCCCCTCAGGGAT
TCCCGAGGAGCCAGCCGGGGatgccgcccctccctgccttgggATCGGCC
CCCTTGGGGCCGGGCGGGTACGTTCCTGGGCAGcatcagcaacagcaaca
ttCCACGCAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTCCCAGC
CGGGGCAATCCTCACCATCGCAACCTCATCATCAACAACACCCGCAGCAT
TACCAACCCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCCATGCC
CCCCGGGCaagctcctccccgtccaggAGTGTttcccccgggcccgcccC
CTGGTCTGCCCCCAGGCGccccccctcggcccctcttccctgtTGCTGGC
ttcgcgcccgcccctcctgcgACCAGCTCCCCTACAGTGTCGGCTGCCCC
CTCCGGGACACAACATCCAGCGACCGAAACGACGGCAGTGGCCACCAAGG
AGATGAACTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAACGGCGG
GCCAAGCTTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCGGGAAG
TGGGTCTTAAATGATGGAAAACGACCTTTCCATTGAGCCGTCGTGCCCAC
CACAATTCGTCGCGAGCATCGAAGGGAACCAGGCACTCGAACGCGACCAT
CGAATACGCCGGCAGCATATACACAGGAAAATATCTTGTTTTTTGCAGGA
TTGTCGCTGCGAGGATCGGCTTTCTCTAGCTAGACCTCTCTTCAAGAAAA
GTCCACGATGGaAGAACAAGCATTTCAAGTGTCAACTATGTCCTCGCAAG
CTTACTTCGGCAAGTGGAATGGTAATTCATGTGACACAGGTACACAAAGA
AACGCTAAAAAAAATACCCggtgcgaaggaaggaagagattCTGTGGATG
TAGAAGTCTTCGGCATGCAGGGTATTCCCATGGAATGCCTCATGGAACGC
GCCGCCAAGAAGcagaggacaggaggggatcCAGGGGGCTCTCACGGAGA
GGCTAACGGTGGAGGAATGCCGGGCTTGCCGCCCGGTATGGGCCCAGGGA
TGGGTATGGGAGcaggctttcctcccggAATGGGAGGCCCTCCGGGACCC
AATGGTATGTACGGACAGATGCCCAATTTCCCAccgcagcaaggaggagt
cTTTGGCGGGTACGGCATGGGGGGTTTCCCGCCCAGGCCGATGTCAGGGC
CGCCGGGCATGTTCCCTCCAGCAGGCAGGATGATGATGCCCCATCAAGGG
GGAATGCCTCCGGGCATgtatccctttcccccgggccAGCAGGCCCCTCA
GGGATTCCCGAGGAGCCAGCCGGGGatgccgcccctccctgccttgggAT
CGGCCCCCTTGGGGCCGGGCGGGTACGTTCCTGGGCAGcatcagcaacag
caacattCCACGCAGGAGCCGCGTCACCCCCACCAAGCACCACAACCGTC
CCAGCCGGGGCAATCCTCACCATCGCAACCTCATCATCAACAACACCCGC
AGCATTACCAACCCCAGCAGCCGCAACCATACCAACAAGGCATACCTCCC
ATGCCCCCCGGGCaagctcctccccgtccaggAGTGTttcccccgggccc
gcccCCTGGTCTGCCCCCAGGCGccccccctcggcccctcttccctgtTG
CTGGCttcgcgcccgcccctcctgcgACCAGCTCCCCTACAGTGTCGGCT
GCCCCCTCCGGGACACAACATCCAGCGACCGAAACGACGGCAGTGGCCAC
CAAGGAGATGAACTTGGTGTACGCAGAGGAGTCAGAGTCCATGGAAGAAC
GGCGGGCCAAGCTTCCCAAGTATTTCTACGATGAAAAGGTCGTTCTTGCG
GGAAGTGGGTCTTAA back to top
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