rna4100, rna4100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4100
Unique Name	rna4100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1396
Alignment location	CM002462.1:852029..855411 -

Link to JBrowse

Properties


Property Name	Value
Product	Sad1/UNC domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100001g11.8186.mrna
Orig protein id	gnl\|cribi\|Naga_100001g11.8186
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:852029..855411 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g11	gene3946	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26675.1	cds4090	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4100	rna4100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:852029..855411-
coding sequence from alignment at CM002462.1:852029..855411-

mRNA sequence

>rna4100 ID=rna4100|Name=rna4100|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp
GCGTGAAAAAAAGACTACCCGTGCGTGTCTGCTCTTCGTCTTGGTGCTTT
TGACACACAAAATAATTATTGTGTAGCTAACTAAAGTAGTGTCAAAAGAG
GCGCATCACCCTTTCCCGTCGCTGACTCGTCGCCTTACGCATGTTTTCGG
AGTGATGCACTTCTATCAGATTATCCAAAACGTGCGACATCATTCAACGT
ATGACTTAGTCTTAGTTAATTAATGCGTTGCTTTCGACATTTTCCGGATC
GTCCACCGCTGTGTGTACGGCTTACCCGCTTCCCGTGCACCTGCGCGCAG
CCTCCTTTCTTGCCCCACCCGCTGATGGAAGCGCGATACAGTGCATGCCT
CAGCATGACTGATTATTCCACCTCTTGTTTTATAAACAGGAAGCAATCAT
CCCCATGCCTGTTCGTCTTTTCACAAAAACTCATCTGACCCAGTTTTTGG
CCGTCGGTACCCTTCTGTCCGGCACGACTTTGGTAGGAGTCAGAGCCTTT
GCTTCGCCCGCCGGCCACCCGACAACCACCAGGATGAGCGCGAGTACCAC
GGGCAGACCGTCTACGTCAACATCCACGGCTTCCACGCTCTTTCCCATCC
CTCTCCGAAAAGTAACTGGGGAAGCCGCGGCCTTGGGAGGGGCTATTCGG
GCGGAAAACTTGATCAAACCGGATGGCGCAGTTATTTTTGTGGTCCGCCG
TCCTGGCTGCATTTTATGCCGGGAGGAAGCCATGGATTTGAGCACACAAC
TTGCTCCTCGTCTGAAAGGCATCAAAAAGAAGCCCAAACTCATGGCTGTG
GTGGCGGAGACTACGAGTGTGGACGGCTTTCTAGAAGCTTTCAAGGGTTT
CGACACTTACTTGGACGAGGAACGCAGCTTTCAGAAGTTCCTCGGCGACC
GGTGGCTGGGCCTAAAAGGGATGTTCTACCCGTCCGTGTGGAAGAACGGC
TCGCGCGCTCAGAAAAAATACCCGGGCCTGGAAGGCGATTTGAAGGGGGA
GGGCCGACGCTTGGGTGGCTTGGTGGTGGTGGACGGGCAAGGAGAGGTTG
TGTACCAGTACAATGAAAAGGTGTTTGGGGACCACGCGCCTTTGGAAGAG
GTGTATAGCGCCGCCTCTAAGTTGTAAGAAATCTGAAATTGCGTCGAAGA
GGTGCTGAGAAGAGGTGCTAAATGGATGCCGTGTACACAGTGGACCAGGA
GAAAGGAATGGGGACCAGCAAGCTTGTTCGTGAGGAATGCGTCGGGGTAA
GCCAAATGTAGAAATACATGCACGGGAAAATGTCCACATTCACTTAAAAC
GTTCGCAAACGCCATGCCCCGACAAGAGGCAGTTTGGGAGGAGGAAGAGA
AATGTTCCTAGGCACACAAAGAAGGCTTTCCTATATCTCGCAATCG

protein sequence of rna4100

>rna4100-protein ID=rna4100-protein|Name=rna4100|organism=Nannochloropsis gaditana|type=polypeptide|length=763bp
MTLTYPFKHYRGHKYRVTMSARRRNSPSVRSSVDSTPTPSPRRLGLRARD
SGAYDLGLMQQGDETSGSEAGRDAPLFALEEMEGEKIKASHVLGTLFVFA
VFSMLAYLMFPGVLNGDVTNSLSTCGIALSDGNGDSVGKGLDVGKLPFDW
MADPAVQSMVERFVEERLETYNETTKYLKEGYLNLTQLMESLRKDQDMYS
DIKGEAESVAGSGQEATLRMLRDLQELKTNLESQQTEQHNQRVHELEGLM
ADYEAIKAQVEHNLQAVQEKTEGLEARMRHEAHETSALEEKVAALSLNVS
ALEDSTARGMDDLTSALRGLQVEETEKLLLQARETTASLGSRVQDMKDEQ
TKLQAAKEAWGSHKVAAEDEAKSLLSQVTEAREELARLVSQSQLEMEGLQ
RSLQAAGDHALSPEDSLPKETVEAVHTVSLSVSTQLSEWKGIIAATLESN
RLLTAHKAEVESRMQEAQKILETIESTAADAAAAMAAAKADVKEGGFEGR
SEVVERLEGELESLRNGQATLAAAVQRSFEMVQQARSGMAIEAEKASGGE
EAAGSAVLAGVTAEDVKRWVRETLSEGQALQDQAGEEVCAPESVASLVER
TVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGF
KAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIP
PEISQLPSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF
PLDLGGGAKGCER

mRNA from alignment at CM002462.1:852029..855411-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4100 ID=rna4100|Name=rna4100|organism=Nannochloropsis gaditana|type=mRNA|length=3383bp|location=Sequence derived from alignment at CM002462.1:852029..855411- (Nannochloropsis gaditana)
CCTCCGTCTCGGTCGTCATCAGCCCTCGCCAACCGAAGGGACCTATTTCA
TCACATGGCCTCCCTCACCATCGTCATCCGGGCTCGCTTTCTTTTGATTT
TCTGGTCGTGAAAGCTTCAAGACTCGCCTAAAGAAGCAGGAATTTCCAGT
CGTAAATGACTCTGACCTATCCTTTCAAACACTATCGGGGACACAAGTAT
AGGGTGACAATGTCGGCCAGACGACGCAACAGCCCCAGCGTCAGGAGCAG
CGTTGACAGCACACCGACACCCTCTCCTCGTCGCCTTGGTCTCAGGGCTC
GAGACTCGGGTGCATACGATTTGGGCTTGATGCAGCAAGGTGATGAAACA
TCTGGGAGCGAAGCGGGTCGTGATGCGCCGCTGTTTGCACTAGAGGAGAT
GGAGGGTGAAAAAATCAAGGCCAGTCATGTTTTGGGCACATTATTTGTTT
TCGCAGTTTTCAGCATGCTGGCCTACCTCATGTTTCCTGGGGTATTAAAT
GGCGACGTAACCAATTCTCTAAGTACATGCGGGATCGCGCTCTCTGATGG
CAATGGAGATTCAGTGGGAAAAGGATTGGATGTGGGAAAATTGCCTTTCG
ATTGGATGGCTGATCCTGCCGTGCAAAGTATGGTAGAACGCTTTGTCGAA
GAGCGCTTGGAGACGTACAACGAAACAACGAAGTACCTGAAGGAGGGCTA
TTTAAACCTGACACAACTAATGGAGAGTTTGAGGAAAGACCAAGACATGT
ATTCTGACATAAAAGGGGAAGCCGAAAGTGTTGCCGGTTCGGGTCAGGAA
GCGACACTTAGAATGCTTCGAGACCTTCAAGAGCTAAAAACAAATCTTGA
ATCTCAACAAACCGAGCAGCATAATCAACGTGTGCATGAACTGGAGGGCC
TGATGGCGGACTATGAGGCTATTAAAGCGCAGGTAGAGCACAATTTGCAG
GCAGTCCAAGAAAAGACGGAGGGATTGGAGGCACGCATGCGCCACGAGGC
GCACGAGACGTCCGCCCTGGAAGAGAAGGTCGCGGCCTTGTCCCTGAACG
TGAGTGCGTTGGAGGACTCGACAGCCCGGGGGATGGACGATTTGACCTCG
GCTCTACGCGGACTTCAAGTCGAGGAGACGGAAAAGCTCCTCCTCCAAGC
GCGCGAGACGACCGCCTCCCTGGGGTCACGCGTCCAAGACATGAAAGACG
AGCAGACGAAGTTGCAGGCGGCAAAAGAGGCCTGGGGATCACACAAAGTC
GCGGCAGAGGACGAGGCGAAATCTCTGCTCAGTCAGGTGACGGAGGCGCG
GGAAGAACTGGCTCGTTTGGTGTCACAGTCCCAGCTGGAAATGGAGGGCT
TGCAGAGGTCCCTGCAGGCAGCCGGCGATCATGCCCTCAGCCCGGAGGAC
TCCCTCCCAAAAGAGACCGTGGAGGCCGTCCACACCGTCTCTTTAAGCGT
GAGTACGCAGCTGTCGGAGTGGAAGGGCATCATAGCCGCCACCCTAGAGT
CGAACCGTCTCCTGACCGCGCATAAAGCGGAAGTGGAGTCGAGGATGCAG
GAGGCACAAAAGATTCTGGAAACTATTGAAAGCACCGCTGCCGATGCAGC
GGCAGCAATGGCGGCGGCGAAAGCGGACGTGAAGGAGGGAGGCTTCGAGG
GGCGGTCCGAAGTGGTGGAGCGTTTGGAAGGAGAGCTCGAGTCCCTGAGG
AACGGGCAGGCGACGCTCGCGGCAGCCGTGCAACGGAGTTTTGAAATGGT
GCAGCAAGCTCGTTCTGGCATGGCGATAGAGGCAGAGAAGGCGAGTGGAG
GAGAGGAGGCGGCCGGTTCGGCTGTCTTGGCGGGCGTCACCGCAGAGGAT
GTCAAGCGATGGGTCCGGGAAACGCTCTCGGAGGGCCAGGCGCTGCAGGA
CCAGGCAGGGGAAGAGGTCTGTGCGCCAGAATCTGTCGCCTCCCTGGTGG
AGAGGACCGTCCGTCTGTACGAAGCCGACGCCGTGGGACTGGTTGACTAC
GCCGCGGCTACCGCGGGCGGGAAGGTCCTTCCCTCCCTCTCTTCGGCTAC
CTACACCCCTCCCGGACAGCTTCTGAGCACAGACACCTTCCACGCCTGGG
GCTTCAAGGCGGAGATTGGCACCCGCGACCTGGTCATCCGCGCTGGGCAC
AAGCGTCCCGGGCAATGTTGGCCCATGGCAGGGAGCAGGGGGCAGGTGAC
GGTGCAGCTCCTCCAGGCGGTTCGACCGTTTTCGGTGTCGCTCGAGCACA
TTCCCCCCGAAATCTCCCAGCTTCCTTCAACGGCCCCGCAACGGTTCCGT
GTGCTCGGGCGGAAGGTGGGCCAGGCTGCTGAAAGCCCCGTGGTCCTACA
CAGTCAAGAATATCTGACGTACGAGATGCAGGGACCCCGCCCGGTGCAAA
CATTCCCCTTGGACCTGGGGGGGGGGGCGAAGGGGTGCGAGCGGTGACAT
TGGAGGTGCTTAGCAATTGGGGCTATGCGGAGTACACGTGCTTGTATCGT
TTCAGGGTACACGGGGAGGTGGTGGGAGAGAGGGAGGCGGTGGTGATGGG
CAGGGAAGAGGGGAGGGGGGAGGAGCGCGAGGACACCGAGAGCGTGGAGA
AGGAGGCGGAACAAGCGGTGGTGGAGGATAAGCAGGGAACAGCGATGAGA
GACGGGCAGGCGGAGAGTGTCAGGGACGGAGGGGATCCTGACGGGTCAGT
GGAGGGGGGGGACGATAGAGAGGGAGGGACGGCATGGGAGACAGCGGGCG
CGGAGGGGGAAGAGAGTGAGGTGGTGGCTGCCAGGGAGGATGAGCAGAAA
GACGCACAGGAGGTGGTTTCCATGGTCGAAGGGATCGAGGATGCAGAGAA
TGGAGGGAGGATGCAGAGAATGGAGGGAGGATGAGGACAGAGGGACATGA
GGAGGACGTGGTGGAGAGGGCGACCTCCGCGGCGGAAGGGAAGACGCTGG
AAGAGATCGTGTGAACTGCACAGAACTGTAAGGATCCGGCAATCAATGCA
TGGATGGCGCCTTGAGGGGACTGTGGGCCGAGGGAGGAGAGCGTTATTAC
GGGAGTGGGCGGTCTCTTTTGCGTGACGCCCGTTACGGGCAGGCCAGTAA
ATATAAATTTGGACACGTGCGTGAAAATGAAGACGGTCGAACAAACACAA
GTCGCCATTCAATCCAACGCAAAAGTCACAGCGAACGCACGGCAGATCAA
AGCCCCCCAAAATAACAGCATCGCACCGTCGATTGCGAGATATAGGAAAG
CCTTCTTTGTGTGCCTAGGAACATTTCTCTTCCTCCTCCCAAACTGCCTC
TTGTCGGGGCATGGCGTTTGCGAACGTTTTAAGTGAATGTGGACATTTTC
CCGTGCATGTATTTCTACATTTGGCTTACCCCG

Coding sequence (CDS) from alignment at CM002462.1:852029..855411-

>rna4100 ID=rna4100|Name=rna4100|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002462.1:852029..855411- (Nannochloropsis gaditana)
ATGACTCTGACCTATCCTTTCAAACACTATCGGGGACACAAGTATAGGGT
GACAATGTCGGCCAGACGACGCAACAGCCCCAGCGTCAGGAGCAGCGTTG
ACAGCACACCGACACCCTCTCCTCGTCGCCTTGGTCTCAGGGCTCGAGAC
TCGGGTGCATACGATTTGGGCTTGATGCAGCAAGGTGATGAAACATCTGG
GAGCGAAGCGGGTCGTGATGCGCCGCTGTTTGCACTAGAGGAGATGGAGG
GTGAAAAAATCAAGGCCAGTCATGTTTTGGGCACATTATTTGTTTTCGCA
GTTTTCAGCATGCTGGCCTACCTCATGTTTCCTGGGGTATTAAATGGCGA
CGTAACCAATTCTCTAAGTACATGCGGGATCGCGCTCTCTGATGGCAATG
GAGATTCAGTGGGAAAAGGATTGGATGTGGGAAAATTGCCTTTCGATTGG
ATGGCTGATCCTGCCGTGCAAAGTATGGTAGAACGCTTTGTCGAAGAGCG
CTTGGAGACGTACAACGAAACAACGAAGTACCTGAAGGAGGGCTATTTAA
ACCTGACACAACTAATGGAGAGTTTGAGGAAAGACCAAGACATGTATTCT
GACATAAAAGGGGAAGCCGAAAGTGTTGCCGGTTCGGGTCAGGAAGCGAC
ACTTAGAATGCTTCGAGACCTTCAAGAGCTAAAAACAAATCTTGAATCTC
AACAAACCGAGCAGCATAATCAACGTGTGCATGAACTGGAGGGCCTGATG
GCGGACTATGAGGCTATTAAAGCGCAGGTAGAGCACAATTTGCAGGCAGT
CCAAGAAAAGACGGAGGGATTGGAGGCACGCATGCGCCACGAGGCGCACG
AGACGTCCGCCCTGGAAGAGAAGGTCGCGGCCTTGTCCCTGAACGTGAGT
GCGTTGGAGGACTCGACAGCCCGGGGGATGGACGATTTGACCTCGGCTCT
ACGCGGACTTCAAGTCGAGGAGACGGAAAAGCTCCTCCTCCAAGCGCGCG
AGACGACCGCCTCCCTGGGGTCACGCGTCCAAGACATGAAAGACGAGCAG
ACGAAGTTGCAGGCGGCAAAAGAGGCCTGGGGATCACACAAAGTCGCGGC
AGAGGACGAGGCGAAATCTCTGCTCAGTCAGGTGACGGAGGCGCGGGAAG
AACTGGCTCGTTTGGTGTCACAGTCCCAGCTGGAAATGGAGGGCTTGCAG
AGGTCCCTGCAGGCAGCCGGCGATCATGCCCTCAGCCCGGAGGACTCCCT
CCCAAAAGAGACCGTGGAGGCCGTCCACACCGTCTCTTTAAGCGTGAGTA
CGCAGCTGTCGGAGTGGAAGGGCATCATAGCCGCCACCCTAGAGTCGAAC
CGTCTCCTGACCGCGCATAAAGCGGAAGTGGAGTCGAGGATGCAGGAGGC
ACAAAAGATTCTGGAAACTATTGAAAGCACCGCTGCCGATGCAGCGGCAG
CAATGGCGGCGGCGAAAGCGGACGTGAAGGAGGGAGGCTTCGAGGGGCGG
TCCGAAGTGGTGGAGCGTTTGGAAGGAGAGCTCGAGTCCCTGAGGAACGG
GCAGGCGACGCTCGCGGCAGCCGTGCAACGGAGTTTTGAAATGGTGCAGC
AAGCTCGTTCTGGCATGGCGATAGAGGCAGAGAAGGCGAGTGGAGGAGAG
GAGGCGGCCGGTTCGGCTGTCTTGGCGGGCGTCACCGCAGAGGATGTCAA
GCGATGGGTCCGGGAAACGCTCTCGGAGGGCCAGGCGCTGCAGGACCAGG
CAGGGGAAGAGGTCTGTGCGCCAGAATCTGTCGCCTCCCTGGTGGAGAGG
ACCGTCCGTCTGTACGAAGCCGACGCCGTGGGACTGGTTGACTACGCCGC
GGCTACCGCGGGCGGGAAGGTCCTTCCCTCCCTCTCTTCGGCTACCTACA
CCCCTCCCGGACAGCTTCTGAGCACAGACACCTTCCACGCCTGGGGCTTC
AAGGCGGAGATTGGCACCCGCGACCTGGTCATCCGCGCTGGGCACAAGCG
TCCCGGGCAATGTTGGCCCATGGCAGGGAGCAGGGGGCAGGTGACGGTGC
AGCTCCTCCAGGCGGTTCGACCGTTTTCGGTGTCGCTCGAGCACATTCCC
CCCGAAATCTCCCAGCTTCCTTCAACGGCCCCGCAACGGTTCCGTGTGCT
CGGGCGGAAGGTGGGCCAGGCTGCTGAAAGCCCCGTGGTCCTACACAGTC
AAGAATATCTGACGTACGAGATGCAGGGACCCCGCCCGGTGCAAACATTC
CCCTTGGACCTGGGGGGGGGGGCGAAGGGGTGCGAGCGGTGA

Synonyms

Publications