EWM26675.1, cds4090 (CDS) Nannochloropsis gaditana

Overview
NameEWM26675.1
Unique Namecds4090
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:852965..855256 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26675.1
ProductSad1/UNC domain containing protein
Orig transcript idgnl|cribi|Naga_100001g11.8186.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:852965..855256 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005635nuclear envelope
GO:0034993meiotic nuclear membrane microtubule tethering complex
GO:0005639integral component of nuclear inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR018539SUN1
IPR012919SUN_dom
Homology
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|585108763|gb|EWM26675.1| (Sad1/UNC domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1549.64 bits (4011), Expect = 0.000e+0
Identity = 763/763 (100.00%), Postives = 763/763 (100.00%), Query Frame = 0
Query:    1 MTLTYPFKHYRGHKYRVTMSARRRNSPSVRSSVDSTPTPSPRRLGLRARDSGAYDLGLMQQGDETSGSEAGRDAPLFALEEMEGEKIKASHVLGTLFVFAVFSMLAYLMFPGVLNGDVTNSLSTCGIALSDGNGDSVGKGLDVGKLPFDWMADPAVQSMVERFVEERLETYNETTKYLKEGYLNLTQLMESLRKDQDMYSDIKGEAESVAGSGQEATLRMLRDLQELKTNLESQQTEQHNQRVHELEGLMADYEAIKAQVEHNLQAVQEKTEGLEARMRHEAHETSALEEKVAALSLNVSALEDSTARGMDDLTSALRGLQVEETEKLLLQARETTASLGSRVQDMKDEQTKLQAAKEAWGSHKVAAEDEAKSLLSQVTEAREELARLVSQSQLEMEGLQRSLQAAGDHALSPEDSLPKETVEAVHTVSLSVSTQLSEWKGIIAATLESNRLLTAHKAEVESRMQEAQKILETIESTAADAAAAMAAAKADVKEGGFEGRSEVVERLEGELESLRNGQATLAAAVQRSFEMVQQARSGMAIEAEKASGGEEAAGSAVLAGVTAEDVKRWVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTFPLDLGGGAKGCER 763
            MTLTYPFKHYRGHKYRVTMSARRRNSPSVRSSVDSTPTPSPRRLGLRARDSGAYDLGLMQQGDETSGSEAGRDAPLFALEEMEGEKIKASHVLGTLFVFAVFSMLAYLMFPGVLNGDVTNSLSTCGIALSDGNGDSVGKGLDVGKLPFDWMADPAVQSMVERFVEERLETYNETTKYLKEGYLNLTQLMESLRKDQDMYSDIKGEAESVAGSGQEATLRMLRDLQELKTNLESQQTEQHNQRVHELEGLMADYEAIKAQVEHNLQAVQEKTEGLEARMRHEAHETSALEEKVAALSLNVSALEDSTARGMDDLTSALRGLQVEETEKLLLQARETTASLGSRVQDMKDEQTKLQAAKEAWGSHKVAAEDEAKSLLSQVTEAREELARLVSQSQLEMEGLQRSLQAAGDHALSPEDSLPKETVEAVHTVSLSVSTQLSEWKGIIAATLESNRLLTAHKAEVESRMQEAQKILETIESTAADAAAAMAAAKADVKEGGFEGRSEVVERLEGELESLRNGQATLAAAVQRSFEMVQQARSGMAIEAEKASGGEEAAGSAVLAGVTAEDVKRWVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTFPLDLGGGAKGCER
Sbjct:    1 MTLTYPFKHYRGHKYRVTMSARRRNSPSVRSSVDSTPTPSPRRLGLRARDSGAYDLGLMQQGDETSGSEAGRDAPLFALEEMEGEKIKASHVLGTLFVFAVFSMLAYLMFPGVLNGDVTNSLSTCGIALSDGNGDSVGKGLDVGKLPFDWMADPAVQSMVERFVEERLETYNETTKYLKEGYLNLTQLMESLRKDQDMYSDIKGEAESVAGSGQEATLRMLRDLQELKTNLESQQTEQHNQRVHELEGLMADYEAIKAQVEHNLQAVQEKTEGLEARMRHEAHETSALEEKVAALSLNVSALEDSTARGMDDLTSALRGLQVEETEKLLLQARETTASLGSRVQDMKDEQTKLQAAKEAWGSHKVAAEDEAKSLLSQVTEAREELARLVSQSQLEMEGLQRSLQAAGDHALSPEDSLPKETVEAVHTVSLSVSTQLSEWKGIIAATLESNRLLTAHKAEVESRMQEAQKILETIESTAADAAAAMAAAKADVKEGGFEGRSEVVERLEGELESLRNGQATLAAAVQRSFEMVQQARSGMAIEAEKASGGEEAAGSAVLAGVTAEDVKRWVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTFPLDLGGGAKGCER 763          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|553196633|ref|XP_005856388.1| (dmc1-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292673|gb|EKU19975.1| dmc1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.906 bits (642), Expect = 1.285e-76
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query:  605 YEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVG 722
            YEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVG
Sbjct:    1 YEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQLPSTAPQRFRVLGRKVG 118          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|676385787|ref|XP_009036172.1| (hypothetical protein AURANDRAFT_63651 [Aureococcus anophagefferens] >gi|323453174|gb|EGB09046.1| hypothetical protein AURANDRAFT_63651 [Aureococcus anophagefferens])

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-16
Identity = 66/170 (38.82%), Postives = 86/170 (50.59%), Query Frame = 0
Query:  593 SVASLVERTVR-----LYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVI--RAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHI-----PPEISQLPSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
              A+ VER V       +EAD V   DYA    G  V+  L+S  YTPPG ++ T  +HA G  A +G  +  I  R G    G C+   GSRG +TVQL   V P + +LEHI      P  +   S+AP+ F VLGR+ G    +PV L S EY   +    + VQTF
Sbjct:  260 CTAAAVERAVDTAVAVFFEADRVAKFDYALRATGASVVQGLTSEPYTPPGSVVPTKVWHALGRDAGVGRAEDAISQRVGF---GSCFAFEGSRGSLTVQLSSRVVPTAFTLEHIHGALCNPLHNANCSSAPRTFTVLGRRAGAPDATPVDLGSFEYDAAD--AAKTVQTF 424          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|815895362|ref|XP_012242598.1| (PREDICTED: SUN domain-containing protein 1-like [Bombus impatiens])

HSP 1 Score: 91.6633 bits (226), Expect = 1.192e-16
Identity = 64/184 (34.78%), Postives = 91/184 (49.46%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
            ++R  +SEG     +   +V +PE+V  LV+  ++ Y+AD  G  DYA  T+GG +L +  + TY+    +L            +  T   +I+     PG+CW   GS G V +QLL  V    VSLEHIP  IS     STAP++F +LG        S       E+ TY+  GP PVQ F
Sbjct:   67 YLRNEVSEGMEQHTKTLLKVMSPETVRELVKSELQTYDADKTGRTDYALGTSGGAILSTRKTETYSAGAPVLK---LFGIPICQQQNTPHAIIQTS-VLPGECWAFKGSSGSVVIQLLGFVHVSGVSLEHIPQSISPTGETSTAPKQFSILGLTSVDDTNS---FFFGEF-TYDNTGP-PVQYF 241          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|1026570879|gb|OAD58483.1| (SUN domain-containing protein 2, partial [Eufriesea mexicana])

HSP 1 Score: 90.5077 bits (223), Expect = 1.404e-16
Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
            ++R  +SEG     +A  +  +PE++  LV+  ++ Y+AD  G  DYA   +GG +L +  + TY+    +L            +  T   +++AG   PG+CW   GS G V +QLL  V    VSLEHIP  IS     STAP++F +LG       E P +    E++ Y+  GP P+Q F
Sbjct:   33 YLRNEVSEGMEQHKKALLKAMSPEAIRELVQNELQTYDADKTGRTDYALGNSGGAILSTRQTETYSAGAPVLK---LFGIPICQQQNTPHAILQAG-VLPGECWAFKGSSGSVVIQLLGFVCVSGVSLEHIPQSISPTGETSTAPKKFSILGL-TSVDDEKPFLF--GEFM-YDNTGP-PIQYF 207          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|915665839|gb|KOC67782.1| (SUN domain-containing protein 1 [Habropoda laboriosa])

HSP 1 Score: 89.7373 bits (221), Expect = 4.446e-16
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLG 718
            ++R  +SEG  L  +A  +  +PE+V +LV+  ++ Y+AD  G  DYA  ++GG +L   ++ TY+    +L            +    + +I+ G   PG+CW   G+ G V +QLL  V    VSLEHIP  IS     STAP+ F +LG
Sbjct:   67 YLRNEVSEGMELHTKALLKAMSPETVRNLVKNELQTYDADKTGRTDYALESSGGAILSMRNTETYSAGAPVLK---LFGIPICQQQNVPEAIIQTG-VLPGECWAFKGTSGSVVIQLLGFVHVSGVSLEHIPQSISPTGETSTAPKNFSILG 214          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|820863445|ref|XP_012348395.1| (PREDICTED: tetratricopeptide repeat protein 39C-like isoform X1 [Apis florea])

HSP 1 Score: 92.4337 bits (228), Expect = 1.229e-15
Identity = 67/188 (35.64%), Postives = 96/188 (51.06%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTR----DLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
            ++R  +SEG  L  +A  +  +PE+V  LV+  ++ Y+AD  G  DYA A +GG +L +  + TY+    +L         F   I  +      +I+ G   PG+CW   GSRG V +QLL  V    VSLEHIP  IS     STAP+ F + G K      +P +    E++ Y+  GP PVQ F
Sbjct:  634 YLRNEVSEGMELHTKALLKAMSPEAVRELVKNELQTYDADKTGRTDYALANSGGAILSTRDTETYSAGAPVLKL-------FGIPICQQQNIPQAIIQTG-VLPGECWAFKGSRGDVVIQLLGFVHISGVSLEHIPQSISPTGETSTAPKEFSIWGLK-NIDDTNPFLF--GEFM-YDNTGP-PVQYF 808          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|1016160112|gb|KZC07274.1| (SUN domain-containing protein 1, partial [Dufourea novaeangliae])

HSP 1 Score: 87.4261 bits (215), Expect = 1.459e-15
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLG 718
            ++R  +SEG     +A  +  +PE+V  LV   ++ Y+AD  G  DYA  ++GG +L + ++ TY+    +L    F       +  T   VI+ G   PG+CW   GS G V +QLL  V    VSLEHIP  IS     STAP+ F + G
Sbjct:   33 YLRNEVSEGMDTHTKALLKAMSPETVRDLVRTELQTYDADKTGRTDYALGSSGGAILTTRNTETYSAGAPVLK---FFGIPLCQQQNTPQAVIQTG-VLPGECWAFKGSSGSVVIQLLGPVHVSGVSLEHIPETISPTGETSTAPKDFSLWG 180          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|820863449|ref|XP_012348397.1| (PREDICTED: tetratricopeptide repeat protein 39C-like isoform X3 [Apis florea])

HSP 1 Score: 92.0485 bits (227), Expect = 1.825e-15
Identity = 67/188 (35.64%), Postives = 96/188 (51.06%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTR----DLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
            ++R  +SEG  L  +A  +  +PE+V  LV+  ++ Y+AD  G  DYA A +GG +L +  + TY+    +L         F   I  +      +I+ G   PG+CW   GSRG V +QLL  V    VSLEHIP  IS     STAP+ F + G K      +P +    E++ Y+  GP PVQ F
Sbjct:  634 YLRNEVSEGMELHTKALLKAMSPEAVRELVKNELQTYDADKTGRTDYALANSGGAILSTRDTETYSAGAPVLKL-------FGIPICQQQNIPQAIIQTG-VLPGECWAFKGSRGDVVIQLLGFVHISGVSLEHIPQSISPTGETSTAPKEFSIWGLK-NIDDTNPFLF--GEFM-YDNTGP-PVQYF 808          
BLAST of EWM26675.1 vs. NCBI_GenBank
Match: gi|925675485|gb|KOX72818.1| (SUN domain-containing protein 1 [Melipona quadrifasciata])

HSP 1 Score: 88.1965 bits (217), Expect = 2.703e-15
Identity = 64/184 (34.78%), Postives = 92/184 (50.00%), Query Frame = 0
Query:  569 WVRETLSEGQALQDQAGEEVCAPESVASLVERTVRLYEADAVGLVDYAAATAGGKVLPSLSSATYTPPGQLLSTDTFHAWGFKAEIGTRDLVIRAGHKRPGQCWPMAGSRGQVTVQLLQAVRPFSVSLEHIPPEISQL--PSTAPQRFRVLGRKVGQAAESPVVLHSQEYLTYEMQGPRPVQTF 750
            ++R  +SEG     +A  +  +PE+V  LV   ++ Y+AD  G  DYA AT+GG +L + ++ TY+    +L            +  T   VI+ G   PG+CW   GS G V +QLL  V    VSLEHIP  IS     STAP+ F +LG  +    ++      +   TY+   P PVQ F
Sbjct:   67 YLRNEVSEGMEQHTRALLKAMSPETVRELVRSELQTYDADKTGRTDYALATSGGAILSTRNTETYSAGAPVLK---LFGIPICQQQNTPHAVIQTG-VLPGECWAFKGSSGSVVIQLLGLVHVSGVSLEHIPQSISPTGETSTAPKDFSILG--LTDVDDTNPFFFGE--FTYDNTAP-PVQYF 241          
The following BLAST results are available for this feature:
BLAST of EWM26675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108763|gb|EWM26675.1|0.000e+0100.00Sad1/UNC domain containing protein [Nannochloropsi... [more]
gi|553196633|ref|XP_005856388.1|1.285e-76100.00dmc1-like protein, partial [Nannochloropsis gadita... [more]
gi|676385787|ref|XP_009036172.1|1.036e-1638.82hypothetical protein AURANDRAFT_63651 [Aureococcus... [more]
gi|815895362|ref|XP_012242598.1|1.192e-1634.78PREDICTED: SUN domain-containing protein 1-like [B... [more]
gi|1026570879|gb|OAD58483.1|1.404e-1633.70SUN domain-containing protein 2, partial [Eufriese... [more]
gi|915665839|gb|KOC67782.1|4.446e-1634.87SUN domain-containing protein 1 [Habropoda laborio... [more]
gi|820863445|ref|XP_012348395.1|1.229e-1535.64PREDICTED: tetratricopeptide repeat protein 39C-li... [more]
gi|1016160112|gb|KZC07274.1|1.459e-1536.18SUN domain-containing protein 1, partial [Dufourea... [more]
gi|820863449|ref|XP_012348397.1|1.825e-1535.64PREDICTED: tetratricopeptide repeat protein 39C-li... [more]
gi|925675485|gb|KOX72818.1|2.703e-1534.78SUN domain-containing protein 1 [Melipona quadrifa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4100rna4100Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications