rna409, rna409 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna409
Unique Name	rna409
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3150
Alignment location	CM002455.1:1015694..1016486 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g76.1752.mrna
Orig protein id	gnl\|cribi\|Naga_100003g76.1752
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1015694..1016486 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g76	gene393	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna409	rna409-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30235.1	cds409	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1015694..1016486-
coding sequence from alignment at CM002455.1:1015694..1016486-

mRNA sequence

>rna409 ID=rna409|Name=rna409|organism=Nannochloropsis gaditana|type=mRNA|length=3150bp
TATAACCCCTGCTATTAGTCACATTTACTGCACAATGTTGTCGTCTTACT
GTCTCTACCTTTTCAAGCGCTGACGCTAAGGCTCGCTCCTTTAATATCAC
GTTGAACTTTGCACATGTCACAGTTGTACACAGAGCCACGGCCTTACACA
TCGCTGCTAAAAGCTATTGTTTTGAAATCAAAATAAGTTGTTTCAGGGGA
TTATAACGAGGCGAAGCTGCAGCTACTGCCATGGCGGCTGAGTCAGGAAA
AGTAGGAAAGACCAGGGGCTTGGACTGCCCCATTTGTTTTGAATCGTACG
GCAGCTCGATTAATGTTCCCATGGTTCTGTCTTGTGGACATACTCTCTGC
GAGAACTGTGTAGGGAAGAATAGAAGGGCCGGTGAAAAGGTTCTTTGTCC
TTTCGATAGCAGCCTATGGACAGTCACTAAGAACTTTGCTCTGCTGCAGA
TCCTGGAACTAGAGGCCCGACCTGGGGTGCATGCGGCGGACACAAAAGCA
GCCGCAGGAGAGCAGCAAAATTGCGACATCTGCTGTGGGGAAGATGGAGA
GACAATACTTCACGATGCAACTGTGTATTGCATTGACTGTGAACAATACC
TCTGCGATCAGGCCGCTCGGCTTCACGGACGTACCAAAACGACGCGGGAG
CACGCCGTCGTGCCCATGGAGGACGCCGAATTTCGCAAAGCAAGACCGCA
GCCAAGCTGTCCCTTCCATGGAATGCCAATTGAATATCTATGCTTGGAAG
ACGACTGCCTAGTCTGTGTTAAATGTCTTCCGTGTCCGATTCACAATGGG
CATCGATGTAAGGCGATTCCTGAGGCGCTCGCGGACGAGAACAGAATGAT
CTCTGCTGACCTCATCCAAGAGGGCAGGGGAAAGATTGATTTGGTCTCCC
GAGCTCTCAGGGTCGCCGAAGAAACTATTGACGGTGTCGATGAACGCCAG
CGCCTGGTCAAGGGTCAAGTTAATTCTTACGTGGATGAGTTGGAAGCAGT
GCTTCAACAGCAGCGCAATGAACTGCTCAAACGGGTAGACGAGACGACTA
CCAGCAAGCTAAAAATACTTTCAGCGCAAGCGGAGGCGCTTCGATGCATA
CTTGAGTCCCTGGTCAATGGTGTGGATCATCTGGAACGACATGATACCAA
CGAGGCGCGGGACTTGTTGATGAAGCGCGCTTTTCGAAAGTCGGTGGAGA
ATACTCATCTGTCCATGGAACCGGACGCCTTAAATGACCTTGAGTTTGTG
GCACGGGAGGGAACACAGGAGATGCTGGGCAGTTTAGGAGAAGTAGCCGA
GTCGGGTCCGTGCGCCTTCAATACCACAGCCGGAGGACCTGGCGTCCTGG
CATACCAAATGCAGGCCCAGAAGGGAATGAAATTCACAGTGTCGGCCAGG
TCTCGAACCAGTCTTCCGGTGACCTGCGGGGGGGAGCGAGTCAGCATCAA
GGTGGACAAAAATCTAAACCCCGAATGGCAAGTAGAAGATGTGGGCAACG
GAACGTACGAGGTCGAGTATCGACTTAATTCCGATCGTCTCCGGGACGAG
CGGTCGTTCCGTTTATTCGTGCGTCTGAACAGCAAAGACATCCAGGGAAG
TCCTTTTACGGTGCCTGTACGGAAGGATTACAACTACGTTGTAGATCGAA
GCTTGCAAGGCATTGGGCTTGTATCGGGTGGTATAATCGACGGTGACTAC
ATATTTGTCGCACTTTATTCGCAAAACCAAATCGTGAAGGTCCGGAGAGA
TACGGGGGCACAGGAGCAGCGCATTCCAGTAAATGGGCAGCCGTATGGAA
TGTGTGTGGATGGACACTTGCTGTATGTTTGTTTGTATAATACGCATTAT
GTAGGTGTATATAACAAAGAAACGGGCGCACAGGAACGAATGCTCGGCGG
GCCAGGAGTGTTTATGAACCCTGTGGGGCTCGCACAGGAAGGGGAGGAAC
TATTCATAACAGAGCACGTCGCTCATCGCCTTCAGGTGGTTCGGAAAGAC
GACGGCACACCCATCCGCCGCTTAGAGGATGCCACGCTCCGGAGCCCCTT
TGGCCTTTTGCTAGACGAGCAACACATCTACATTTCTTCCAACACGGGTA
ATCACGTCAAGGTTTACAGTAAAGGAACCTTAAATCTAGTCCATACAGTG
GGGGAAAGCGGAGGGCAATTTTTGCAATCTCCCATATCCCTTGCACAGGA
GGATGATATCTTATTCGTTGGATGCAATGGAAACAATCTTGTACAGCTTT
ATCGCAAGGGAACTTTTGAGGCGCTTGGCACAATCCACAACGTCAATCAG
CCGTACGGTGCATGTACACATGAAAACTTTTTATATCTTTGTTGCATGGG
CGTCTCAGCCGTGACTGTTCTTCGACCTTCCTTCTTGGATCCCTCTCCAC
ACGCACGCAAGGGGCCCACGGTTCCTTTTGCCCCTACAGGCGCAGGAACG
TTGGAGGGTATCGCTGGAGGCGGGGGAATAGGAGAGGCAGGGGTTTTGGG
CCTCGGTGGGGTCGAATTTGAAGATGGGACCGAGAACGGCTCAGATCTTG
AGAGAAGAAGAGGTGGACGAGACGCTCTATTAAGAGGGGAGGGCGACGGT
ATGATGCGGGCAGGAAGCAGGGGAGAAACAGGCGGCAGGGCTGCCGTCAG
GGGGCATGCGGGGGACGGAATGGTTCCTGCTTTGAATGCAGGACCGGCCG
ACCATGATCTGGTAGATTTCGGAGACGGGGATTACTAGCTTGGTTAAGGA
AAAGAGACATCATTCTGAAGGTCAAATATGGACCAGTGATGATCTTCAGG
TGGAAGACTTGGAGATGACTCGAGTAGGTCGAGGATGTCAAGGATGGAAA
GTCAAAGCCTTTGTCCACATCAGCATCATCTGAGGTTAGATGAGGAGAAC
AAAATAATTTATGCGATATTTGAATGTACCACATGAGATTCTTCAATGTA
TCACATCGACATCCATAGCATTTATTGCATAATGCATGCCTTTGGCGAGC
ATAAGGCTCAGCGGCCACGTCAAATGCCAAATGCCCACTTGAAAAGAGAG
TGATTGAGTACGCCAGAGAGAGAGGTCACAACGTATGATATCCAAGCCCA
AGGTGCTGTAAAGCTTAAAGAAATCGATAATGCATTTAATGCCCCACTCC

protein sequence of rna409

>rna409-protein ID=rna409-protein|Name=rna409|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MCGDPHEESTKPLVKESCSEEDQSAAGVGSGVEPARIAYTLSRLLSHSLS
LNKWKIVDSIAGSNSIRTRIDAGTGWSDGYGGSKRSGWEFDRNETVNLGE
KWKRNGWAEWRTHLVESIKFIECIRPCVDVHTIAEDEGVPCRSSKRIIHT
CIISARYRTDSGVATMVVWPEDWFRVFKASETRLPSDRLCHPNPPFIERT
SCSVRQE

mRNA from alignment at CM002455.1:1015694..1016486-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna409 ID=rna409|Name=rna409|organism=Nannochloropsis gaditana|type=mRNA|length=793bp|location=Sequence derived from alignment at CM002455.1:1015694..1016486- (Nannochloropsis gaditana)
ATGTGCGGGGATCCGCACGAAGAAAGCACAAAGCCGTTGGTGAAAGAAAG
TTGTTCTGAGGAAGACCAATCTGCTGCGGGGGTGGGGTCCGGGGTGGAGC
CGGCAAGTTTGGTTGCTTGGCCGACAACTTGGTTAACATGAGGGCTCGTG
GAGAGGTGTTATTGAGTGAGAGTAGGGATAGCGTATACTCTTTCGCGCCT
ATTGTCACACTCTCTTAGCTTAAACAAATGGAAAATCGTAGATTCCATCG
CTGGAAGGTATGCGCGGAGATTGAAGAGTAAGAACTCACAGAAAGCAAAA
GAGGCTTAAGAGATGGACGTTATAAAAAAGCAGGGGCACGAGGAATATCA
AGTAGAGTAATTCGATCCGAACTCGAATTGACGCTGGCACGGGATGGAGC
GACGGCTATGGAGGTAGCAAGCGATCGGGGTGGGAATTTGATAGAAACGA
GACGGTCAATCTGGGGGAGAAATGGAAGCGGAATGGATGGGCCGAATGGC
GTACACATTTGGTTGAGTCAATCAAATTTATCGAGTGTATCAGGCCCTGC
GTCGATGTGCATACCATAGCGGAGGACGAAGGTGTGCCGTGTCGAAGCAG
CAAACGAATCATTCACACATGTATTATTTCTGCCCGTTATCGAACCGATT
CAGGAGTGGCGACGATGGTAGTCTGGCCAGAGGACTGGTTTCGGGTGTTT
AAGGCATCAGAGACAAGGTTGCCCTCCGACCGGCTGTGTCATCCCAACCC
TCCCTTTATAGAAAGAACTTCCTGCTCAGTTAGACAGGAGTAA

Coding sequence (CDS) from alignment at CM002455.1:1015694..1016486-

>rna409 ID=rna409|Name=rna409|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002455.1:1015694..1016486- (Nannochloropsis gaditana)
TAATTCGATCCGAACTCGAATTGACGCTGGCACGGGATGGAGCGACGGCT
ATGGAGGTAGCAAGCGATCGGGGTGGGAATTTGATAGAAACGAGACGGTC
AATCTGGGGGAGAAATGGAAGCGGAATGGATGGGCCGAATGGCGTACACA
TTTGGTTGAGTCAATCAAATTTATCGAGTGTATCAGGCCCTGCGTCGATG
TGCATACCATAGCGGAGGACGAAGGTGTGCCGTGTCGAAGCAGCAAACGA
ATCATTCACACATGTATTATTTCTGCCCGTTATCGAACCGATTCAGGAGT
GGCGACGATGGTAGTCTGGCCAGAGGACTGGTTTCGGGTGTTTAAGGCAT
CAGAGACAAGGTTGCCCTCCGACCGGCTGTGTCATCCCAACCCTCCCTTT
ATAGAAAGAACTTCCTGCTCAGTTAGACAGGAGTAAGGATAGCGTATACT
CTTTCGCGCCTATTGTCACACTCTCTTAGCTTAAACAAATGGAAAATCGT
AGATTCCATCGCTGGAAGATGTGCGGGGATCCGCACGAAGAAAGCACAAA
GCCGTTGGTGAAAGAAAGTTGTTCTGAGGAAGACCAATCTGCTGCGGGGG
TGGGGTCCGGGGTGGAGCCGGCAATAATTCGATCCGAACTCGAATTGACG
CTGGCACGGGATGGAGCGACGGCTATGGAGGTAGCAAGCGATCGGGGTGG
GAATTTGATAGAAACGAGACGGTCAATCTGGGGGAGAAATGGAAGCGGAA
TGGATGGGCCGAATGGCGTACACATTTGGTTGAGTCAATCAAATTTATCG
AGTGTATCAGGCCCTGCGTCGATGTGCATACCATAGCGGAGGACGAAGGT
GTGCCGTGTCGAAGCAGCAAACGAATCATTCACACATGTATTATTTCTGC
CCGTTATCGAACCGATTCAGGAGTGGCGACGATGGTAGTCTGGCCAGAGG
ACTGGTTTCGGGTGTTTAAGGCATCAGAGACAAGGTTGCCCTCCGACCGG
CTGTGTCATCCCAACCCTCCCTTTATAGAAAGAACTTCCTGCTCAGTTAG
ACAGGAGTAAGGATAGCGTATACTCTTTCGCGCCTATTGTCACACTCTCT
TAGCTTAAACAAATGGAAAATCGTAGATTCCATCGCTGGAAGATGTGCGG
GGATCCGCACGAAGAAAGCACAAAGCCGTTGGTGAAAGAAAGTTGTTCTG
AGGAAGACCAATCTGCTGCGGGGGTGGGGTCCGGGGTGGAGCCGGCAATA
ATTCGATCCGAACTCGAATTGACGCTGGCACGGGATGGAGCGACGGCTAT
GGAGGTAGCAAGCGATCGGGGTGGGAATTTGATAGAAACGAGACGGTCAA
TCTGGGGGAGAAATGGAAGCGGAATGGATGGGCCGAATGGCGTACACATT
TGGTTGAGTCAATCAAATTTATCGAGTGTATCAGGCCCTGCGTCGATGTG
CATACCATAGCGGAGGACGAAGGTGTGCCGTGTCGAAGCAGCAAACGAAT
CATTCACACATGTATTATTTCTGCCCGTTATCGAACCGATTCAGGAGTGG
CGACGATGGTAGTCTGGCCAGAGGACTGGTTTCGGGTGTTTAAGGCATCA
GAGACAAGGTTGCCCTCCGACCGGCTGTGTCATCCCAACCCTCCCTTTAT
AGAAAGAACTTCCTGCTCAGTTAGACAGGAGTAAGGATAGCGTATACTCT
TTCGCGCCTATTGTCACACTCTCTTAGCTTAAACAAATGGAAAATCGTAG
ATTCCATCGCTGGAAGATGTGCGGGGATCCGCACGAAGAAAGCACAAAGC
CGTTGGTGAAAGAAAGTTGTTCTGAGGAAGACCAATCTGCTGCGGGGGTG
GGGTCCGGGGTGGAGCCGGCAA

Synonyms

Publications