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Properties
| Property Name | Value |
|---|
| Product | rna polymerase ii ctd phosphatase |
| Orig transcript id | gnl|cribi|Naga_100001g25.8132.mrna |
| Orig protein id | gnl|cribi|Naga_100001g25.8132 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:823356..825786 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4087 ID=rna4087|Name=rna4087|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp
ATGATCATGCGTCGGCTTCTTCCGGTCATCGTCACGTCCTTTGTGACCTT
GTCACCCTTCGCAGCCGACCGGGCGCCTTGTCCCGTACCCGCCGCTCTGC
ACAACGACAACTACTGCGACGACCTGGTCAATGGCTGCGACGAGCCAAAA
ACCAGTGCTTGCTCGATGGTGAAGCGTGCGTCGACATTTGCGTGCGATGC
TTCGGTGACGGGCGAGCCGCATTTGCTGCCGGCATCCCGGGTGGGGGACA
CGATTTGCGACTGCTGCGATGGAAGCGATGAGGCCCCAGGGACGTGTCCA
AACACGTGTGAAAGCTTGCAGGAAGAGTATTTGAACGATGCTTTTCAATG
GTACGAAGATGTCACGGTGGGAAAGGAGCGGCGGGATGCTGCCATGGCGG
AGGCACAGGCGATCCTGGGGGGTTGGCAAGTGGAAATGAATAAAATCGAA
GCTTCCGTGTCTGCGCATCGATCGTTGTTGACAAAGTTGCGGAAGTTGAG
GGCGATAGAAGAGAGGAAAGAAGGTTGGGAGAACTTTTGGTGGCTTCGAG
AGAAGCGAAGGAGGAGCGTCGGCAGGACGAGGCTTTGCCAAGGGGAGCGA
GAGGGGGAGGAGGAAGAGTCCGTTGCGGCCCCGGAAATGCCTGAGAGCGA
GACAGAACCATCCGCAGAGGGGGAAAAGGACTCAAACGACATGGACGCGG
AGTTGGCAGACGAAGGTGAGGACCAAGAAGGCGTTCCTTCGGAAGGCGCT
GGGGTCCTCCACCGCGTCCGGGTCTCCTTGCCGGCCTTGGAGGCCGAGGA
GGACCCGCTCTTGCACGCGATGCGCGCTACCATTGCCACCGATGAAAGAC
GCTCCCTCTCGCTCCAAGCATATTTGGACAGCGACATGGCCGCCTCCGCC
ACCGCCCAGGCGGCTTCCACCCTGAAAACGGCGCTGGCGGCTTGGGAACC
CGCGGAGGTCCTGGAGCTTAATCTGCAAGCCCTCGGTGCCCTCATCCTGG
GCCCTTTTTACATGCTCTCCTGGGCTCTTCGCCTTTGTCAGAATGAGCTG
TGGGAGGCGCTGGGCAAGCTGACGAGCGGTGACAAAAAAAGGCATGTGCA
GCAGGGCTTTGACCGGGGGCTGGAGGGGAAGGTGGAAACCTTTGAAACGG
CCCTTTCCCCTGGATTGAAGGGTAAGCTTGAATGGGCCCTAGATGCTATC
ACGCAGGGCCCAATACTGGCGTTGGCCCTGGCGCGTCCCGAGACGATCGC
CGATGCACCAGAACGGTTGGAGGCGGCCCTCCTTCGGTTCGCCGTGAACC
AACTAGAGGGGCAGTGTGAGGAGGAGGTTGGGCGAGTGGAGGAGCTCCGA
GAGTGGATGGAATACCCAGGGTACAGTGCGGAGGAGGGGGACGAGAAAGT
GTATGTGACATGGCGAGATACGTGCTTCGAGAAGTCTGAAAAGACTTTTG
ACTACAAAGTGTGCCCGTTTCATGAGGTCAAACAAGACCACGTATTGGTG
GGGAGGTGGGCAGCGTGGATCAAGCGGGAAGATGGACAAGGGGTAGCTGA
AGGAGCGGGGCCCGTCATGTTTTTCTCGGAAGGGCAGCAGTGCTGGAATG
GTCCGAAGCGGAGTGCCGTCGTTCAGTTGTGGTGTGGACTGGAGGAGCAG
TTGGTGGAAGTGTCGGAGCCAACTGTCTGTGTATACGACTTTGTATTGAT
GACTCCGTTGGCATGTACTGAGGCAGTATTGGCCCAAGCAGAAGAGAGAC
TGAGGAACCTAGGTATTAAGTTGCCAAAGGATGAGCCGAGTGGCGAGAAC
GTAGACAGAATAAAGCACGATGAATTCTGA back to topprotein sequence of rna4087 >rna4087-protein ID=rna4087-protein|Name=rna4087|organism=Nannochloropsis gaditana|type=polypeptide|length=689bp
MAKRRPRPTATSLNGTQGVGTCDNGNGGTRAYDTETLELDLEGQGLRPLT
VSWGRRQGDRVKVGAELAQVICERLDGGGKVVRRLKAQHTGRLEEVVAPD
LSGLRRPGTDVGREGPEAKEPEERPLPPPRLVLGKLRYCTHPVLQSGRMC
AVCGEVLSEGTGQAQEATRVFVQGGYHVSVSRTEAAFLHRSMAQKLRLAR
KLNLILDIDLTLLHATIDPRAERLDHQKLEVHAFDIFNQGRILRHWCCLR
PHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDD
CPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFYTE
FEEVNRVAGLAPAPVLGSSAIPPSRPLSPPPSSPPTTTHSSPAPSGVSGK
ETDAEAGRKGEKTPPVPPTVFGDPREDTQLEHTWRVLEAVHALYYPRGGK
PDTEQGDGGAGGSIIEERGPASGNDELSLKAGKEGEGEEADEDQGVRPPQ
NVAGCLSSVRRQVLAGVTILFSGVLPRNVDPRRSDLGYMALSLGARIVED
FSPTVTHLVAENASTEKVFRARRQGGMWIVARTWLQLSFFHCDRKDEAGH
VLPGCMSTVVQCRKKGVKETLPVFGGDGCEPGGESQEAKEQRFDNKSDED
NERMSKRPKGAAEKMEHADGDGEDATAEALVAALEDELG back to topmRNA from alignment at CM002462.1:823356..825786+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4087 ID=rna4087|Name=rna4087|organism=Nannochloropsis gaditana|type=mRNA|length=2431bp|location=Sequence derived from alignment at CM002462.1:823356..825786+ (Nannochloropsis gaditana)
GTTTTGTTCGATCTGTCGtcgaaggaaaaaatgtccGTGGAACACGCCCA
AACCCATAAATGGTTCAGTCCTGCATGCCAGAACATACTGGATTATGGCT
GGTCGTCTCGCAGCACCTTTAGTCACACTCTTCTCTCCCCGTTCGCACCG
CCAAGGTCGTGGCCCGCGCCATGGCCAAACGCCGTCCGCGACCAACGGCA
ACATCACTCAACGGCACCCAGGGGGTCGGCACCTGCGACAATGGAAATGG
TGGCACGAGGGCTTATGATACCGAGACGTTGGAGCTTGATTTAGAAGGGC
AGGGTTTGCGCCCGTTGACCGTGTCCTGGGGACGCCGGCAAGGAGACCGC
GTCAAGGTCGGCGCCGAGCTGGCACAGGTCATATGTGAACGGCTTGACGG
CGGTGGGAAGGTGGTGCGAAGGCTGAAAGCCCAACATACAGGTcgattgg
aggaggtggtagcCCCGGATCTGAGCGGCTTGCGTCGCCCGGGCAcggac
gtggggagggagggcccggAGGCCAaggagccggaggaaagGCCGTTACC
CCCGCCGAGGCTGGTGTTGGGCAAGCTTCGTTACTGCACGCACCCTGTCT
TACAGAGCGGACGCATGTGTGCGGTGTGTGGGGAGGTCCTGTCGGAGGGG
ACGGggcaggcccaggaggccaCCAGGGTCTTTGTCCAAGGCGGGTACCA
CGTCTCAGTGTCCCGGACGGAGGCGGCCTTTCTGCACCGAAGCATGGCAC
AGAAGCTCCGACTTGCGCGGAAACTGAATCTGATCCTCGACATCGACCTG
ACCCTGCTCCACGCCACCATCGATCCAAGGGCCGAGCGCCTGGACCACCA
AAAACTGGAAGTGCACGCCTTCGACATCTTCAACCAAGGTCGGATCCTCC
GTCACTGGTgctgcctccgtccccacctccgcacattcctctcccaggcc
cacGCCCTGTACGTCCTGACCATCTACACCCACGGTCGCCGCGACTATGC
CCACCAggtcgcccgcctcctcgacccGGACCGTACCCTCTTCGAAGATC
GGATCGTCAGTCGGGACGACTGCCCCGACCTCCACGGGCAAAAATCCTTG
CAGCGACTTTTTCCCGGGGGTATTGAGATGGCCTTGATCTTGGACGACAG
CCCCCAAGTCTGGCAAGGCGAGCAGTCccgccaccttctccccgtcctcc
ccttcaagTTCTACACAGAGTTTGAAGAAGTCAACCGGGTCGCGGGGCTT
GCTCCGGCCCCTGTCCTGGGTTCCAgcgccatccctccctcccgacctct
gtcgccccctccctcttcccctcctaccACCACTCACTCGTCACCGGCTC
CCTCGGGGGTTTCCGGGAAAGAAACGGACGCGGAGGCGGGtcggaagggg
gaaaagacgcCACCGGTGCCACCCACTGTGTTTGGAGACCCCCGGGAGGA
CACGCAGCTCGAGCATACCTGGCGGGTCTTGGAAGCTGTGCATGCACTCT
ACTACCCGAGGGGGGGCAAGCCAGACACAGAacagggagacggaggggcg
ggaggaagtaTCAtagaggagagagggcccGCGTCGGGGAATGACGAGCT
GTCGttgaaggcagggaaggagggcgagggagaggaagcagacgaGGATC
AGGGCGTGCGACCCCCCCAAAACGTGGCTGGGTGCCTGAGCTCCGTGCGG
CGACAAGTCCTGGCGGGTGTCACCATCTTGTTCAGCGGCGTCCTACCACG
GAATGTAGACCCCCGGCGGAGCGACTTGGGCTACATGGCCCTTTCCCTAG
GGGCACGCATTGTCGAGGACTTCAGCCCCACGGTCACCCACCTGGTCGCA
GAGAATGCCAGCACAGAGAAAGTCTTCCGGGCCAGGCGGCAAGGCGGTAT
GTGGATAGTGGCCCGCACGTGGTTGCAGCTGTCGTTTTTCCACTGCGATC
GAAAGGATGAAGCGGGCCACGTACTGCCAGGATGTATGTCGACGGTCGTG
CAATGTAGAAAAAAGGGCGTCAAGGAGACGCTGCCAGTCTTTGGGGGGGA
TGGGTGCGAGCCGGGTGGTGAGTCACAGGAAGCCAAAGAGCAGAGGTTCG
ACAACAAGAGCGACGAGGACAACGAAAGAATGAGTAAACGCCCGAAAGGT
GCAGCGGAAAAAATGGAACATGCTgatggagatggggaggatgcgaCCGC
GGAGGCCCTCGTTGCGGCGCTTGAGGACGAGCTAGGATGATTGAAAAATC
AAAAAGTGACTTGAATGTAGAAAGAAACTCAATCAAATATGCATcttatt
tctttttcgtACGtctgatgaggaggagaaggagatgcaACGGCGGACGG
ACTCCCCCGGAGGATCTCTTTCCGGCATTTAAGAACGAACTGGCACGACT
GCAAATGAAAGAAAATACTTGGATGTAGGAA back to topCoding sequence (CDS) from alignment at CM002462.1:823356..825786+ >rna4087 ID=rna4087|Name=rna4087|organism=Nannochloropsis gaditana|type=CDS|length=2070bp|location=Sequence derived from alignment at CM002462.1:823356..825786+ (Nannochloropsis gaditana)
ATGGCCAAACGCCGTCCGCGACCAACGGCAACATCACTCAACGGCACCCA
GGGGGTCGGCACCTGCGACAATGGAAATGGTGGCACGAGGGCTTATGATA
CCGAGACGTTGGAGCTTGATTTAGAAGGGCAGGGTTTGCGCCCGTTGACC
GTGTCCTGGGGACGCCGGCAAGGAGACCGCGTCAAGGTCGGCGCCGAGCT
GGCACAGGTCATATGTGAACGGCTTGACGGCGGTGGGAAGGTGGTGCGAA
GGCTGAAAGCCCAACATACAGGTcgattggaggaggtggtagcCCCGGAT
CTGAGCGGCTTGCGTCGCCCGGGCAcggacgtggggagggagggcccggA
GGCCAaggagccggaggaaagGCCGTTACCCCCGCCGAGGCTGGTGTTGG
GCAAGCTTCGTTACTGCACGCACCCTGTCTTACAGAGCGGACGCATGTGT
GCGGTGTGTGGGGAGGTCCTGTCGGAGGGGACGGggcaggcccaggaggc
caCCAGGGTCTTTGTCCAAGGCGGGTACCACGTCTCAGTGTCCCGGACGG
AGGCGGCCTTTCTGCACCGAAGCATGGCACAGAAGCTCCGACTTGCGCGG
AAACTGAATCTGATCCTCGACATCGACCTGACCCTGCTCCACGCCACCAT
CGATCCAAGGGCCGAGCGCCTGGACCACCAAAAACTGGAAGTGCACGCCT
TCGACATCTTCAACCAAGGTCGGATCCTCCGTCACTGGTgctgcctccgt
ccccacctccgcacattcctctcccaggcccacGCCCTGTACGTCCTGAC
CATCTACACCCACGGTCGCCGCGACTATGCCCACCAggtcgcccgcctcc
tcgacccGGACCGTACCCTCTTCGAAGATCGGATCGTCAGTCGGGACGAC
TGCCCCGACCTCCACGGGCAAAAATCCTTGCAGCGACTTTTTCCCGGGGG
TATTGAGATGGCCTTGATCTTGGACGACAGCCCCCAAGTCTGGCAAGGCG
AGCAGTCccgccaccttctccccgtcctccccttcaagTTCTACACAGAG
TTTGAAGAAGTCAACCGGGTCGCGGGGCTTGCTCCGGCCCCTGTCCTGGG
TTCCAgcgccatccctccctcccgacctctgtcgccccctccctcttccc
ctcctaccACCACTCACTCGTCACCGGCTCCCTCGGGGGTTTCCGGGAAA
GAAACGGACGCGGAGGCGGGtcggaagggggaaaagacgcCACCGGTGCC
ACCCACTGTGTTTGGAGACCCCCGGGAGGACACGCAGCTCGAGCATACCT
GGCGGGTCTTGGAAGCTGTGCATGCACTCTACTACCCGAGGGGGGGCAAG
CCAGACACAGAacagggagacggaggggcgggaggaagtaTCAtagagga
gagagggcccGCGTCGGGGAATGACGAGCTGTCGttgaaggcagggaagg
agggcgagggagaggaagcagacgaGGATCAGGGCGTGCGACCCCCCCAA
AACGTGGCTGGGTGCCTGAGCTCCGTGCGGCGACAAGTCCTGGCGGGTGT
CACCATCTTGTTCAGCGGCGTCCTACCACGGAATGTAGACCCCCGGCGGA
GCGACTTGGGCTACATGGCCCTTTCCCTAGGGGCACGCATTGTCGAGGAC
TTCAGCCCCACGGTCACCCACCTGGTCGCAGAGAATGCCAGCACAGAGAA
AGTCTTCCGGGCCAGGCGGCAAGGCGGTATGTGGATAGTGGCCCGCACGT
GGTTGCAGCTGTCGTTTTTCCACTGCGATCGAAAGGATGAAGCGGGCCAC
GTACTGCCAGGATGTATGTCGACGGTCGTGCAATGTAGAAAAAAGGGCGT
CAAGGAGACGCTGCCAGTCTTTGGGGGGGATGGGTGCGAGCCGGGTGGTG
AGTCACAGGAAGCCAAAGAGCAGAGGTTCGACAACAAGAGCGACGAGGAC
AACGAAAGAATGAGTAAACGCCCGAAAGGTGCAGCGGAAAAAATGGAACA
TGCTgatggagatggggaggatgcgaCCGCGGAGGCCCTCGTTGCGGCGC
TTGAGGACGAGCTAGGATGA back to top
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