rna4083, rna4083 (mRNA) Nannochloropsis gaditana

Overview
Namerna4083
Unique Namerna4083
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1812
Alignment locationCM002462.1:813509..814351 +

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Properties
Property NameValue
Productankyrin domain protein
Orig transcript idgnl|cribi|Naga_100001g29.8221.mrna
Orig protein idgnl|cribi|Naga_100001g29.8221
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:813509..814351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g29gene3929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4083rna4083-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26710.1cds4073Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4083 ID=rna4083|Name=rna4083|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp
ATGGCACCCTCTATGCAGGTGCCAACACCCAAAACGGTCCTCCTCCTTGT
CCTTGCCCTCATCCTCATGGCGAATACCCATGTCTTCGCCTTCGTCACCC
CGGCCTCCCGCCCCCTGAAGGCCCCAACCAATGCCCTGCGTTTCACATGC
TCCCCAGCCATTCCCGTACGCGCGCCTGTGTTCAAACCTAGCCGTATATA
CAAGCTACGTCCCGCCTGCTCAGCGGCCGTGCCTGCCGCCTCCGACATGC
CTGTTCCCCCCATGTCCCCGGCCACCGACTCCTCGTCCGAGGAAGATACG
TCCAAGTCCCAGAAGATATTGGAACGACCGTTCAAAGGCATCGTGGAAGA
CGTCCATCGCAAGGCCCCCCACTACCTGTCCGACTTCAAGGACGGCGCGA
ACGTGAAGGGGGTGGCGGCTATCTTCTTCCTGTTCTTCGCCTGTTTGGCC
CCCGCCGTCGCCTTCGGAGGCCTGATGGGCAAGCTCACGGAGGGAAACAT
CGGGACCATGGAGATGCTCCTGGCCACCGCCTCCAACGGCATTGCCTACG
CGCTTTTCTCCGGGCAGCCCCTCACCATCATCGGCAGCACCGGCCCCGTC
TTGGCCTTCACGCTCGTGCTCTACCGGACCGCTCAGAATCTGGCGCTGCC
TTTCCTCCCCCTCTATTCCTGGGTGGGCATCTGGACGTCCCTCATCCTCT
TCCTCTCCTCTGTCACCAGCCTCTCCAATTTGGTCAACTACTTTACACGC
TTCACCGACGAGATCTTCTCCCTCCTCATCTCCCTCATCTTCCTGTACGA
AGCAGTCAAGGACCTCTCCTCCTTTTTCATCAACCCCTCCGTTGGCTTCG
CCAAGGCCCTCCTCTCCCTCGTCATCGCGGTCACCACCTTCAACACCAGC
ATCACGCTCGCAGGCCTTCGACGCGGGAAGCTCTTTACCAAGCGCGTCCG
CGACGTCATCGCGGATTTTGCCCCCACCATCGGTGTCCTGGCCGGGTGTT
TTCTCACCGCCCTTGCCAAAGCCAAGAAGGCCGAGGCACTGCCAACGCTG
TTGATTCCCGATTCTTTCTCCACCTCCCTTGGCCGGCCCTGGCTGGTGAA
TATTTTCGCGTTGCCTATATGGGCCCGGTGGGCAGCTTTCATCCCCGCGC
TCATGTCCTCTGTCCTGCTCTTCATGGATCAGAATATCACGGTCCGCTTG
GTGAATTCCCCCTCGCACAAGATCAAGAAGGGGTACGGCTTGCACTTGGA
CATGTTCGTCGTCTCCATCCTGACCTTTATCAATTCCTTGTTTGGTCTCC
CGTGGTTGGTGGCCGCCACAGTCAGGTCCTTGAACCACGTCCGGGCGTGT
GCGCGCTTTAAGAGCACTGAAGACGGCGAGGTGGTGATCGAGAGCATGCA
AGAGAACCGGCTCACGGGCCTTGCCATCCACTCATTGATCGGGGTAGCCA
TTCTCGGGTTCCGTCCCCTCCTTGGGCAGGTCCCCCTGGCGGTTTTGATG
GGACTCTTCCTCTACTTGGGAAAGAGCTCTTTGGCTGGTAATCAAATGTG
GGAGCGGTTGAAATTGCTCATTACCGATCCTGCGCAACGTCCGAAAGCGG
CGTGGGCGCAAAAGGTACCTTTTAAAGTCAGCGCTGCGTTCACAGGATTG
CAGTTTGCCTGTCTTGGAGGGATGTGGGCCCTTAAGTCATCTCCGATTGG
TGTCTTATTTCCCTTACTGATCGCTGCGCTTGCCCCCATCCGCGTTGCAA
TCGAGAAGCTTGGATGGTTCGACAAGAAAGATTTGGAGATCTTAGACTCG
GAAGATGACTAA
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protein sequence of rna4083

>rna4083-protein ID=rna4083-protein|Name=rna4083|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MLKALNDAVTAGSVHKVSCLLRAHPLLVSTRMHEGGWTPLLLASYYDQPE
VVELILNRAGVGVDDVDQDIFRRTSLHWLAAHGHPLLILKMVKQHGASVD
IRDAEQNTPLHRACKANQALTVAMLLMLGADPLARTEEGDLPSDVTESGM
TRSCMRLWQTSCLRLSSFKQGRTQKACNDYTTKGIQDASEKKVGENPFNS
FVLAETNCREKEQGLFQFRSESLGTRSTESVLSWEDDNAGGSEAPSLEEE
DEASTLLSRAQVLSDWGKRETPFWKRGLST
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mRNA from alignment at CM002462.1:813509..814351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4083 ID=rna4083|Name=rna4083|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002462.1:813509..814351+ (Nannochloropsis gaditana)
ATGTTAAAAGCTTTAAACGATGCCGTAACTGCCGGCAGTGTGCATAAGGT
CTCCTGCCTGTTGCGTGCCCATCCCTTGCTTGTCTCCACGCGGATgcatg
agggaggatggacTCCGCTGCTCCTCGCTAGTTACTATGACCAACCTGAG
GTCGTGGAACTCATCCTCAACCGCGCTGGTGTTGGTGTAGATGACGTCGA
CCAAGATATTTTTCGTCGAACCTCGTTACACTGGCTTGCTGCGCATGGCC
ACCCGTTGCTGATTTTGAAGATGGTAAAACAGCACGGGGCCTCTGTTGAC
ATACGCGATGCCGAGCAAAACACGCCCCTGCACCGCGCATGCAAAGCAAA
TCAAGCCCTGACCGTTGCCATGCTTTTGATGCTGGGTGCTGATCCCTTGG
CCCGCaccgaggaaggagacctTCCATCAGACGTGACTGAGTCGGGCATG
ACCCGGTCGTGCATGCGCCTCTGGCAAACATCCTGCCTGCGATTGTCGTC
TTTTAAACAAGGACGTACTCAGAAAGCCTGCAACGATTATACGACCAAGG
GTATCCAGGATGCAAGTGAGAAAAAGGTTGGAGAAAATCCTTTCAATTCC
TTCGTTTTGGCTGAGACCAATTgtagggagaaggaacagggATTGTTTCA
GTTTCGGTCTGAATCGCTCGGCACCAGATCCACAGAAAGTGTGCTGTCGT
GGGAAGATGATAATGCAGGGGGATCAGAAGCTCCttcgctggaagaggag
gatgaagctTCAACTTTGCTTTCGAGAGCTCAGGTCTTGTCGGATtgggg
caagagggaaacaCCCTTTTGGAAAAGAGGCTTGAGCACGTGA
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Coding sequence (CDS) from alignment at CM002462.1:813509..814351+

>rna4083 ID=rna4083|Name=rna4083|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002462.1:813509..814351+ (Nannochloropsis gaditana)
ATGTTAAAAGCTTTAAACGATGCCGTAACTGCCGGCAGTGTGCATAAGGT
CTCCTGCCTGTTGCGTGCCCATCCCTTGCTTGTCTCCACGCGGATgcatg
agggaggatggacTCCGCTGCTCCTCGCTAGTTACTATGACCAACCTGAG
GTCGTGGAACTCATCCTCAACCGCGCTGGTGTTGGTGTAGATGACGTCGA
CCAAGATATTTTTCGTCGAACCTCGTTACACTGGCTTGCTGCGCATGGCC
ACCCGTTGCTGATTTTGAAGATGGTAAAACAGCACGGGGCCTCTGTTGAC
ATACGCGATGCCGAGCAAAACACGCCCCTGCACCGCGCATGCAAAGCAAA
TCAAGCCCTGACCGTTGCCATGCTTTTGATGCTGGGTGCTGATCCCTTGG
CCCGCaccgaggaaggagacctTCCATCAGACGTGACTGAGTCGGGCATG
ACCCGGTCGTGCATGCGCCTCTGGCAAACATCCTGCCTGCGATTGTCGTC
TTTTAAACAAGGACGTACTCAGAAAGCCTGCAACGATTATACGACCAAGG
GTATCCAGGATGCAAGTGAGAAAAAGGTTGGAGAAAATCCTTTCAATTCC
TTCGTTTTGGCTGAGACCAATTgtagggagaaggaacagggATTGTTTCA
GTTTCGGTCTGAATCGCTCGGCACCAGATCCACAGAAAGTGTGCTGTCGT
GGGAAGATGATAATGCAGGGGGATCAGAAGCTCCttcgctggaagaggag
gatgaagctTCAACTTTGCTTTCGAGAGCTCAGGTCTTGTCGGATtgggg
caagagggaaacaCCCTTTTGGAAAAGAGGCTTGAGCACGTGA
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Synonyms
Publications