rna4078, rna4078 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4078
Unique Name	rna4078
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1345
Alignment location	CM002462.1:803015..804889 -

Link to JBrowse

Properties


Property Name	Value
Product	RFT1 family lipid transporter
Orig transcript id	gnl\|cribi\|Naga_100001g34.8267.mrna
Orig protein id	gnl\|cribi\|Naga_100001g34.8267
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:803015..804889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g34	gene3924	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26756.1	cds4068	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4078	rna4078-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:803015..804889-
coding sequence from alignment at CM002462.1:803015..804889-

mRNA sequence

>rna4078 ID=rna4078|Name=rna4078|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp
ACAGTCAGCCTTCCACCACACCTCTTGTCTTTATTTAAGACATGACTGTT
GGAGCGTGCACACCTCCCGACCATATGCATATCGCAAGTGTCGCAGGCAA
TCTCACCGACAATGAAACATTAGAAGGGGGCTGTCCTGGCACATGCATGG
CCCCCGCAAGGCAGACCCGAGAGGTTGTTGAGAGCGACACGCGTAGTTTC
AGCACACCATCCTCCGCAACCATGAACAATCAGACAACACCAAGCAATAT
GACATTAAATACTTATTCCTGTCCTGTAGAAGGTGGTAGTAACGATTACA
AAGGAAAGGGCGACTCTGGTGCTGCCAGTGGGAATGAACTTGCCTCTGGC
AAAGTCCACGAAAAGGCTGCCCCAGAGACGGAAGATGAAGTAATTTGCCT
CAATCTCTCCACGCTTCTACCCAAGAAATCGAAACACGGACGGATCGGTG
GCTCCCTGTACAGGGCTCTGCGGGATGCAGGGGTCGATGTGGCCGCTTTG
GGGATCCCGCGGGGGCGGCCGCCACGCACCAAAGTTGGTCAGAAGCGACC
GAAGCGCCCGACGCTGCTGAGTTTCATCAAGTCAGGGGCAGAATTACCGA
TGGTCCCCGGGGCCCCGCGCTTGCGCATCGTCAACATGGACCTGATGGGA
GATGGCGAGCAGTTGGTGGAAGTTGAGGAGCCGACAGTGTACGGACAGGG
CCTAGGGTTGCGACAGGCAACCAACAAGCAGCGAGTGACGGGCCGGAGGC
GTAGGAGCGATGTGGATAAGGAGGACGTGGACGACAAGCGGCTGAGGGGG
ATGGGAAAAAGGGGAGAGGAGCCCACCGACTTGGCAGCTGACGAGGCAGC
TGCGACAGAACTCTTGCTTTTGCTGGGGGAGAACAATGTCTAAAGACTCA
AAAAGTAGCATTTCCGACCCATGATTCGGTGCTAGCGGCGTTGTCACGGC
AGGATAAATTGACAGATCGTGGTCTTGAGATTGTAGGAGGAGCGAGCGAG
CGCGGCGCCGGGAAAAAAGATGCATATGGGAGCCCCTCGAGTACGCCCGC
AGCAGCACAAGCTTGACAGGCTGTGAAAAGCGAAACTCGACTAGGGTACA
GATATAGCTGTGGACGAGATGTCCCATGCCGTGTGCCTGCCACCCTAGAG
CGAGTTTCTTCACAAGCATACACTGTCCGCTTTAGGATTGAAAGGGTTGC
ATAGCCCGCCAAAATATAGAGATAGAAGTGTAGCATGCATTTTTGCCTGA
ACAGGCAGGGGTACGAGTAGGATCACTGCTCCAGCCCAAGAAAAAATCGA
CCGACATACAAATTATGCACTGGAAGCAAGCATCGAGTCTTTGCT

protein sequence of rna4078

>rna4078-protein ID=rna4078-protein|Name=rna4078|organism=Nannochloropsis gaditana|type=polypeptide|length=624bp
MVLQRGVNFVLNQLLLRHVDPAVFGLASVPLDLLLNTALFLSREGFRLTL
GRTTLVGLSSDTCEFRQFVNLSWVPVLLGPLVSLLSLAFLPSNHNEDIGG
KGQNADALRQTGLLFCLAASLESLSEPAYLVCQGCLLTTLRSASEGLATL
IRSIITFVLLVWVLPPEKALLAFGFAQVGYSVVLILVYWGYLIYVSLKGG
GQTGIPGASKEAAMDTTSTSQTTQTPLRLLALSHLLPRAPSSSSALWVEP
SHLALAFALTGQSFFKHLLTQGDKIVLSIGSSHYSQGLYALAQNYGSLAA
RLLFQPLEESGRLMFARLAAGNGGVVGEDGAEAADDKKKKKTETSVATDH
RRGRGAEPGESAASQAMLKVLVGALVKTVILVGLVFACFGFNYTRVLLRL
LLPGRRWETGAGVGAEGSGEVLSWYCLYVLFLAVNGMTEAFVYAVATQQD
VVRLGALAAVSFAVFAGLTFPFIRWHGTVGLVLANCAGMLVRILFSIHFV
RAYFDGVVSTRKQDGGEGHVSSTMLSTREKQPDMFPHPVVLASFVAAFAA
TYASDKTLVSVDEVEPVLKHVVFGGMVFTGVLGSILWTEQDFFEDLKSIR
RLATGRREEAGSKAKSGLEGKKGA

mRNA from alignment at CM002462.1:803015..804889-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4078 ID=rna4078|Name=rna4078|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002462.1:803015..804889- (Nannochloropsis gaditana)
ATGGTCTTGCAGCGCGGAGTCAATTTTGTATTGAATCAACTTTTGCTCCG
TCACGTGGATCCCGCTGTGTTTGGGCTCGCCTCCGTGCCTCTTGACCTGC
TCTTGAATACGGCGCTTTTTCTCTCCCGTGAGGGTTTCCGGTTGACGTTG
GGTCGAACCACTCTTGTTGGATTGTCGTCCGACACGTGTGAATTTCGTCA
ATTCGTAAACTTAAGCTGGGTGCCTGTCTTACTGGGACCTTTGGTGTCCC
TGCTTTCTTTGGCCTTTTTACCCTCTAACCACAACGAAGACATCGGTGGT
AAAGGACAAAACGCAGATGCACTACGGCAAACTGGGCTTCTGTTTTGCCT
AGCAGCCTCTTTAGAAAGCCTGAGTGAGCCTGCTTATCTAGTCTGCCAGG
GATGTCTCCTAACAACGCTTCGATCGGCCTCGGAGGGACTGGCGACATTA
ATCCGCTCGATCATAACGTTTGTGCTGCTTGTTTGGGTGCTACCACCTGA
AAAAGCGCTTTTAGCCTTCGGTTTCGCCCAGGTCGGATACTCTGTTGTTT
TGATCCTCGTTTATTGGGGCTACCTCATCTACGTGAGTCTGAAGGGGGGA
GGTCAAACAGGAATTCCGGGAGCATCAAAGGAGGCAGCTATGGATACCAC
ATCCACCAGTCAAACCACCCAAACGCCACTACGCCTCCTTGCCCTCTCCC
ACCTGCTCCCTAGAGCCCCTTCTTCCTCCTCCGCACTTTGGGTGGAGCCG
TCACACTTGGCGCTCGCTTTCGCGCTGACAGGGCAGTCTTTCTTCAAGCA
CCTGCTCACCCAAGGCGACAAAATCGTTCTCTCCATTGGCAGCTCGCATT
ACTCGCAAGGTCTCTATGCCTTGGCGCAGAACTACGGCTCTTTGGCAGCA
AGGTTGCTGTTCCAACCCTTAGAAGAGAGCGGGCGGCTCATGTTCGCCAG
GCTGGCCGCAGGGAATGGTGGGGTCGTGGGGGAGGACGGGGCCGAAGCAG
CCGATGATAAGAAAAAGAAAAAGACGGAAACTTCTGTGGCTACTGATCAT
CGACGGGGAAGGGGGGCAGAGCCGGGAGAGTCTGCCGCTTCGCAGGCCAT
GCTAAAGGTCCTCGTCGGCGCCTTGGTCAAAACCGTCATCCTCGTGGGCC
TCGTCTTTGCCTGCTTCGGCTTCAACTACACGCGCGTCCTCCTCCGACTT
CTCCTCCCCGGGAGGCGGTGGGAGACAGGGGCAGGAGTAGGGGCCGAGGG
CAGCGGCGAGGTCCTCTCCTGGTACTGCCTGTACGTGCTCTTTCTCGCAG
TGAATGGGATGACGGAGGCCTTTGTGTACGCCGTGGCCACACAACAGGAT
GTGGTACGTTTGGGTGCCTTGGCAGCCGTTTCGTTCGCGGTTTTTGCCGG
CCTGACATTCCCTTTCATTCGATGGCACGGAACGGTCGGGTTGGTGTTGG
CAAATTGTGCGGGGATGCTGGTGCGAATCTTGTTCAGTATACACTTCGTA
AGGGCCTACTTCGACGGCGTCGTGTCGACGCGGAAGCAGGACGGAGGGGA
GGGGCATGTTTCGTCCACGATGCTTTCGACAAGAGAAAAACAACCAGACA
TGTTTCCCCACCCAGTAGTGCTCGCGTCATTTGTGGCCGCCTTTGCTGCG
ACCTATGCTTCAGATAAGACGTTGGTGTCAGTAGATGAAGTGGAGCCTGT
TTTGAAGCATGTGGTGTTCGGCGGGATGGTTTTTACAGGAGTACTAGGTT
CTATATTGTGGACAGAACAAGATTTTTTTGAGGATTTGAAAAGTATACGG
AGATTGGCGACAGGCAGGAGGGAGGAAGCTGGATCAAAAGCGAAATCGGG
GTTGGAGGGCAAGAAGGGGGCGTGA

Coding sequence (CDS) from alignment at CM002462.1:803015..804889-

>rna4078 ID=rna4078|Name=rna4078|organism=Nannochloropsis gaditana|type=CDS|length=1875bp|location=Sequence derived from alignment at CM002462.1:803015..804889- (Nannochloropsis gaditana)
ATGGTCTTGCAGCGCGGAGTCAATTTTGTATTGAATCAACTTTTGCTCCG
TCACGTGGATCCCGCTGTGTTTGGGCTCGCCTCCGTGCCTCTTGACCTGC
TCTTGAATACGGCGCTTTTTCTCTCCCGTGAGGGTTTCCGGTTGACGTTG
GGTCGAACCACTCTTGTTGGATTGTCGTCCGACACGTGTGAATTTCGTCA
ATTCGTAAACTTAAGCTGGGTGCCTGTCTTACTGGGACCTTTGGTGTCCC
TGCTTTCTTTGGCCTTTTTACCCTCTAACCACAACGAAGACATCGGTGGT
AAAGGACAAAACGCAGATGCACTACGGCAAACTGGGCTTCTGTTTTGCCT
AGCAGCCTCTTTAGAAAGCCTGAGTGAGCCTGCTTATCTAGTCTGCCAGG
GATGTCTCCTAACAACGCTTCGATCGGCCTCGGAGGGACTGGCGACATTA
ATCCGCTCGATCATAACGTTTGTGCTGCTTGTTTGGGTGCTACCACCTGA
AAAAGCGCTTTTAGCCTTCGGTTTCGCCCAGGTCGGATACTCTGTTGTTT
TGATCCTCGTTTATTGGGGCTACCTCATCTACGTGAGTCTGAAGGGGGGA
GGTCAAACAGGAATTCCGGGAGCATCAAAGGAGGCAGCTATGGATACCAC
ATCCACCAGTCAAACCACCCAAACGCCACTACGCCTCCTTGCCCTCTCCC
ACCTGCTCCCTAGAGCCCCTTCTTCCTCCTCCGCACTTTGGGTGGAGCCG
TCACACTTGGCGCTCGCTTTCGCGCTGACAGGGCAGTCTTTCTTCAAGCA
CCTGCTCACCCAAGGCGACAAAATCGTTCTCTCCATTGGCAGCTCGCATT
ACTCGCAAGGTCTCTATGCCTTGGCGCAGAACTACGGCTCTTTGGCAGCA
AGGTTGCTGTTCCAACCCTTAGAAGAGAGCGGGCGGCTCATGTTCGCCAG
GCTGGCCGCAGGGAATGGTGGGGTCGTGGGGGAGGACGGGGCCGAAGCAG
CCGATGATAAGAAAAAGAAAAAGACGGAAACTTCTGTGGCTACTGATCAT
CGACGGGGAAGGGGGGCAGAGCCGGGAGAGTCTGCCGCTTCGCAGGCCAT
GCTAAAGGTCCTCGTCGGCGCCTTGGTCAAAACCGTCATCCTCGTGGGCC
TCGTCTTTGCCTGCTTCGGCTTCAACTACACGCGCGTCCTCCTCCGACTT
CTCCTCCCCGGGAGGCGGTGGGAGACAGGGGCAGGAGTAGGGGCCGAGGG
CAGCGGCGAGGTCCTCTCCTGGTACTGCCTGTACGTGCTCTTTCTCGCAG
TGAATGGGATGACGGAGGCCTTTGTGTACGCCGTGGCCACACAACAGGAT
GTGGTACGTTTGGGTGCCTTGGCAGCCGTTTCGTTCGCGGTTTTTGCCGG
CCTGACATTCCCTTTCATTCGATGGCACGGAACGGTCGGGTTGGTGTTGG
CAAATTGTGCGGGGATGCTGGTGCGAATCTTGTTCAGTATACACTTCGTA
AGGGCCTACTTCGACGGCGTCGTGTCGACGCGGAAGCAGGACGGAGGGGA
GGGGCATGTTTCGTCCACGATGCTTTCGACAAGAGAAAAACAACCAGACA
TGTTTCCCCACCCAGTAGTGCTCGCGTCATTTGTGGCCGCCTTTGCTGCG
ACCTATGCTTCAGATAAGACGTTGGTGTCAGTAGATGAAGTGGAGCCTGT
TTTGAAGCATGTGGTGTTCGGCGGGATGGTTTTTACAGGAGTACTAGGTT
CTATATTGTGGACAGAACAAGATTTTTTTGAGGATTTGAAAAGTATACGG
AGATTGGCGACAGGCAGGAGGGAGGAAGCTGGATCAAAAGCGAAATCGGG
GTTGGAGGGCAAGAAGGGGGCGTGA

Synonyms

Publications