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Properties
| Property Name | Value |
|---|
| Product | Endoplasmic reticulum, stress-associated Ramp4 |
| Orig transcript id | gnl|cribi|Naga_100001g36.8270.mrna |
| Orig protein id | gnl|cribi|Naga_100001g36.8270 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:798231..799695 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4076 ID=rna4076|Name=rna4076|organism=Nannochloropsis gaditana|type=mRNA|length=4998bp
ATGCAACGCTGCTTTGTTCGGCACCATTATGGAGTCAAGTTACTGCTGCG
ACGTACTGCAAAAGTTTCCTCTTGCCCTGGCTTATCACGTGGCTGGCATG
TCTCTTCTCCAGCTACCCTCCCCCCCCCCTTGGGGACAAATCAGCGTGCC
TATTTTTCATCCACTCCTTTAGCACTGGGAGGTACTCCCCCACATGCGCC
AGAAACCAATTTGGACGCTTTGGAGGTATTGAAAAAGCAAAAAAATGCCG
TGAGCTCCTTGGCCTGGCTGCGAAGTATCAGAAGCGCTCTAAGTCCCGAA
GCATATTACAAGGTCTTGGAGATCAGTCGGGAGGCATGCGACGCACACAG
CGCATTGGGGGTTCTAAGCCTTATGAAAAGCCAAGGGCAACATCTGGATG
TAAAAGCGTGCACCATCGCAATTGAAGTGTGTGCGCGGGCGGGGGATATA
GACAACGCAGAGCGGGTATTGAGCGAGATGAAGGCTTCAGGTCTGAAATG
CTCCCCAGTAAATTACCACCATATAATACATGCCTGTCGGCGTCAAAGAA
ATGGGACCAAGGCCTTACATATGCTGGATCATATGGCAATCGATGGCCTG
GCGCCAGACCGTAAGGCGTACGTGCACGTGCTTGGGGCTTGTGGCGCCCA
AAGTCTCATGTCTGAGGCAGAGACGCTGCTGCACAGGATAACAAATGAAG
ACTTGAAAGGGAGCGTTGAAGTGGATCAAGAGCTCTGCTCTTCTCTAGTC
GTGGGGGCCGCAGAGAACGGGCGCCGGAAGGGTTGGGCAGGAAGCTGGAG
GGCCTGGGAGGTGGTGAGGGAGCACAGGACCGGCTTGACAGCGATCGCAT
TCAAAGCCCTCCGAAGCTCTCTGACACGGACGGGGCAGTATGAGCGTCTT
CTCGACCTATGTCGTGATCTACAAGGTGCATTAGACTCGAGCGGGAGGTC
CCAAGGACTCTCTACAGCTTCGCAGTCCGCCGAGGACGTGGCTACTACTG
GCATCGAGGCTTGCCTCCATCTGGAGGACCACGCCGAGCTGAAAAAGTGC
GTGCAGAAACGGTTGAGACAAGGCGCTTTTCACGCGATCGTCTATCAAGA
AGCTCTAAGTGCATGGCTGGCCTTAGGCCGGTGGGACGAGATGCTTCGCC
TCTATCGGGACGGACAGGAGGGCGAGGCCTGGGAGGATGACTACTTGCTC
CTGAGCATCATGGCCACAGGAGCGGCGCGTCTATCTAAAACACCCATGAA
AGACTCCGTCCCCTTTTTGATGAATATGGAGCGTCGAGGGTGGATAGCGG
GGATGTCGGAATCCCCTTCCTTGCCTGCGTCATCCATTTCCCCCTTCGCG
CGCTCTCTCTTGGCACGGGATTGGAACACATCTCCGAGACAGAGGCAGAC
AGGCGAAAAGGTAGCAAGCGGCGGTAGTTTGAGACACGATTATGAGTCGA
AGCCCGTCCATGCCATCGTGGCCTTGGAGATGCTCAGGCGCGCGGATTCG
AGGCGGTGGCAGGAGTCGCTGCAGGTGCTGAGGAGGCTGTGCGAGTGTGC
CGGGCGGCTTGAGGCAAAGGGAGTGGGCGTATCGGCCTTGGAACGTGCCA
TGCCGGCCTTCGAGCGTGTGATCAGTGCTGCTGTCAAAGCTGGCAATTTA
GAGGCTGCCAAAGATTTGTTAAAACGTCTTGACGCTCGCGGCATGTGCCC
GTCGGCGCGATCCTACAATGCGCTTCTGTACGAATACGCCCGGACTGGGC
AGGTTTCCGATGCACAGACCTTGTTCGAGGCCATGTGTGCGGCGGGAAAG
GGGAGGCACGAGGACAATGCCGCAGGCGGTGCATTTCATGGCCCTGTGCC
TAGTCGGGTGAACTACAACACTATGTTGCTGGTCTTGGCCAAGACGGGGG
CCTTCGAGGACGCGAAAGCCTTGGTGCGAAGCATGACGCCGCCGAGGGCA
CCGGCGCCGGACCTTGTCTCGTACAACACCGTCTTAGCGGCCGGGACCGC
TGCGAGAGATCCGAAGGGAGCCCGAGATTTCTTCGAGGAGGAAATGGTCA
AGAAAAGGAAAGTGCGTCCGGACGAAGTGACTTACATAACATTGCTGTCA
GCCTGGCAAGCCATGGCGCGGGGGTACGGCCGAAGCGAAGACGAGGAGTC
GCATATCACGGGACACGTACCACATGCATCGCCAAGGCTTAAAAAAGACG
TAGACTCTGATGAAGTGTGGCTGCAGACATTAGCCCTATTCAAGGACTTG
GAGAACGCTGAGGGCGGGGCGCCCAATTTGATGGCTTTCAATATCATGAT
GGACATTGGCTGTAAAACTGGGCATGTCGATGACGCCCGCTCTCTTGTCC
TGCCAGCCATGAAGCGGCACGCTTGCGAGCCGGACAGGGTAACGTATAAT
ACCCTTGCTCAGGGTTATTTGCGAGGTCGGCGATATGAAGAGGCCTTGAA
GATTTGTAGGGAGTCTCGGGTGGGACCGGTTAACCTTGGCTGGGACAGCC
ACACGTACGGCGTGATGCTCAAGGCCTTGGCAGGGCTTAAGAAGGACGAC
GAAATGAAGGGGCTTTTTTGGGAAAGAATAAATGCATTGCGGGAAGGGAA
GGCGAATGAAAGAGCGAGTCAGAGGACTGGACTTCCCGACAGCGACGGGA
GGCATTTCCAGGACTCAAAGCGGTCGGGCATCCAGAAATTATTAGAGGAG
ATCCTTTCTGCCATGGTGTATGTTGGGAGGGTAGATGACGGCGTGCTCTT
GATAAGGGAGCTGGAGAACCAGATAAGCGGACCTCAAAAAAAGAACGCGC
TCTATTTGCTTGGGGCGGACTCATTCGAGAGGTCCGTCCAATTTTGCAAG
TCCACGAGGGACCTGGAGGGGGCTCTGAGACTACTGGAGGAGTTGGAGCG
ACGGGGGGAGAGGCCCAGTGCGGCGGCGTGCTTTGCTGTTATGAGGCTCT
GCAGTATCAAACAAGCGTGGCAGACCGGCTTAGACGTAGTAGAGCGCGTG
GCTCAATGCCCTGAGTTGTCTCGAGCGATGGGCCGGGACCTGCATACGGC
ACGTGTGAGCTTCTGTGCGCATTTAAATGACATCGCGGGCTGTCGTGTCG
CCTTGCGCGAGATGCGAAAAGAGGGTTTCTTGCCCGACGAGAAAGTCTAC
GGATGGGCCCTGAAGTGCGAGGCGACACGACCGCGCAACGTTGGGGGGGT
CGGAGAGCTTCTCGTCCAAGCAAAGGAAGATGGTGTCATGTTAACACCAG
ACGTGCTGAAAGCGCAAATGGCAACTTTGAGACAGTCGGGAAATTGGCGG
GGCGCTGTGCAACTTTTGGACCGCATGGTGGCGCTACGAGAGCAGCAGCT
ACAGAACGAAGAGCAGGACGGGCAAGCCTCACAAAGGGTTGTCCGAGGCA
CCGATGCTGACTATGGTCCCCAGATCTCTCAAGTCACGGAGATCAGCACC
CACATCTTTAACGACGTGTTGGCAACACTGGCACAAGGCAAGGAATGGTA
TCAGATCCTCGAATTGCAAGGGAACATGCTAGAGAAGCACGGCGTCGTCC
CGGACAACGTGAGCTTTTTGTACCGACTCCAGGCCCTCAGCGAGACGAAA
GACTGGAAACAAGCCCTGGCAGTTCTTGATGAGATCAGGATAGGCGCCCA
CGGGCCCCCCGTCTTCGCTCAAGACAGCATGTACACGGTAATTTTGTCCG
GCGGCGCGCTCGATAGGCAACCCAAAGAAATCGAAGGCCTGGTCATGAGG
TGGGAGGAAGACAGTCGTCCCTACACTCGGCACTTCTTGAACGCTCTGAT
TGGCGCGTACGGTCGTGGAGGACAACTTGCCAAGGCGGTGGATACTTTCA
ATAAAATCCCCACTCATCTTAATGGGGCCGAACCCGACATTGTGGCCTTC
AACGCCCTCCTGGTGGCTCAACGCCTGGCCGCGACGCCCTTGGACGAGGG
GGCCCTTCCTCTGTACCGGGAGCTTCTGTCACGGGCACCGTCAGGTTTGG
CGCCAGATGGCTGGACATACACCTCCCTGATCGTTGCTTGTGAGGCCAAA
GGGGCGTGGCCAGTCGCCATGTACTTGTACGACGACTCGGCTTTTACATT
GCCCCGGGCAGGAGGCGCACCCGCCGCGGCGTCAAGGGCCTCTGAGGGGG
AAGGGCTGGAGGACGTGGTCAAGGATGCCCATTTTAAGGCGGCAGAGGAC
GCAAGAGGCCTGGGGTGGAAGGACCCGAGTAGGACGGAAGTCCACTCAGT
CTGGGAAAAGAGCGAGACGGGTACGTGGATGGGGGTCGACGTGACGGCGG
GAGCCGAGTACCGCCACCCAATTGCTGGCGCCCGGGACGCCAAAAGCAAC
AGCGCGCGCTTTGAATCCCTCAAGACACTTATGTCTTGCTTGGAAAAGCT
AAACATCGGTTTATTCATCGAGAAATTGTACCGAGATGCGTATCAGCAAG
GGGTCTTCAGCCCGTGGTCCCAAACGGAAGGCAATGGCCGGGTGATGGAC
TTGCACCATTTCTCATGTCCCTTGGCCACAGTAGCAATCAGGTATGCTTT
GCTGGAATTCGAATCCGAGCAGCTTGAGCAACGGAGGCTTCCTTGGGGAA
AAAGAAAGAAGAGCATGTCCCCTTGGGTGATCATTGTTGGCCAAGGGCTG
AAAAGAAAGTCTGGGAGCGGTGCCTTGAAGAAAGAGGTCTTGCGCATTTT
TGCGGGCCTGGACCCTCCCTTGCAAGCAGATGTGGACAAGAGAAACACGG
GTCGCCTGATCGTACCGGCCAGCCGTATCAAGGCGTACACGACCGCCAGG
ATCGAGCGGGGAAAGCATACCTGTACACGCGAAGCGCTCGGGGCACATAC
CCTGCTACACAAGATATTAGGAAATGAGTGCGTTCATTACTCACAGAACA
ACTTGTCACCAAGCTGCTTTGGAGCGAGAGGACTCTTTATATTATTGGCT
GCATGTCAAAAAGGATCACTCCTGAAAGGCCACCCTGAGTGTACATAG back to topprotein sequence of rna4076 >rna4076-protein ID=rna4076-protein|Name=rna4076|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAAT
QQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEA
PPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF back to topmRNA from alignment at CM002462.1:798231..799695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4076 ID=rna4076|Name=rna4076|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp|location=Sequence derived from alignment at CM002462.1:798231..799695- (Nannochloropsis gaditana)
CCCTCACGTCCAGGCGTTGCTCAAAAGAGTTCAATTGACACGACTCTACA
CGACAAAAAATGCATACTTCCGGTCCAGTTGCCTCCTTATTTCATTTTTA
TGGATTTGGTCGGTGTGGTGCGAATTGACGGGCCCTTCGCGGGTTTTAAA
ATACCATTCTTGTGCACTCGAACGCCCATGCGCGCGAGAATGATGATGCT
CAATCTGAGTGTCTTGTACATCTCATTGGACTCAAATCTCGCTGCTACAC
AACAGGCTCCAGATCAGGCTTCGTCCTTGTACACATTTTGTAACATGGTA
AGAGAGACGATTTTTGCTCTTTTAAAGCGGTGGAGGTCAAGGATAAGAAG
GCGAACCGACGCTGCGACCTGCAACCTCATCTGACCCCAACAATATTTCT
TTCTATTGCTCTATGCAGGCCACCAGCCGTGCCATCCGTCTTCGTTCAGA
GAAGTTTGATAAAAATGTTACCAAGCGAGGAAATGTCCCTGTTGGAAAGG
CGGCGGTACGTCCTCAATCAAAGTCATTGGCGAAGTCATAGGAGTCATGT
TTACTTCTCCATCTTTTCCATAACTTGCGTATGAAGGCGAGCGCAATTAT
GATCCGTATCACGACACCTGAGGTCTTCATTTTCGTGGGCTTATTTAGGC
CGATTTTTGATAGCAACGATATCTTCTGCTTCCCTTTTTTATTACTATTC
CCATAGCTCTCGTGCTCGTTCTCTGCGTATTGATGCCCGCGACTCATTGA
AGAACCCTCACCATTCCTACTCCTTCTGTCATAAAATTTCACAGAAGCGA
GAAGAAGCTCCACCCGTGAGCCCTGTACTTTTGGGTTTCTTCGTTTTTGT
GGTTGTGGGTTCCGCTTTCTTTCAGATCATCCGAACTGCTCAAAGCGGGC
CCATTTTTTGAGACAGTAAGAAATGCGATGCTACAAAACTTGGACCAAAT
TATCTTTGCGGAAAGGAAAGAGACGACATGACGCGGGGAATGTATGGGAA
GTTTGAAACTTGGGCACGATGGAATTCGGACATGCGTCTGTGTTGCTCAT
CAAGGGATGGTAGAATTCGATGGGGCATTGCTGGGCGGAATTACGAGTTG
GCATTAACTTGTAAGCTGGCAGTTTTGAAATAAAAGCGAACTATGATACT
GCCATAGGTCGAGCTTCGTGACGGCTTTTCCCTCGCGGAAGGCCTTTGAA
TTATTTGCGCCATTTTATCCCGGATCATATGTACACACTATGTACACTCA
GGGTGGCCTTTCAGGAGTGATCCTTTTTGACATGCAGCCAATAATATAAA
GAGTCCTCTCGCTCCAAAGCAGCTTGGTGACAAGTTGTTCTGTGAGTAAT
GAACGCACTCATTTCCTAATATCTTGTGTAGCAGGGTATGTGCCCCGAGC
GCTTCGCGTGTCTACTGATAAGTCAAACCCCCCGCTGCCTGTCACGAACT
TTGAGGACATATCTC back to topCoding sequence (CDS) from alignment at CM002462.1:798231..799695- >rna4076 ID=rna4076|Name=rna4076|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002462.1:798231..799695- (Nannochloropsis gaditana)
AAGCGAGAAGAAGCTCCACCCGTGAGCCCTGTACTTTTGGGTTTCTTCGT
TTTTGTGGTTGTGGGTTCCGCTTTCTTTCAGATCATCCGAACTGCTCAAA
GCGGGCCCATTTTTTGAGCCACCAGCCGTGCCATCCGTCTTCGTTCAGAG
AAGTTTGATAAAAATGTTACCAAGCGAGGAAATGTCCCTGTTGGAAAGGC
GGCGATGGATTTGGTCGGTGTGGTGCGAATTGACGGGCCCTTCGCGGGTT
TTAAAATACCATTCTTGTGCACTCGAACGCCCATGCGCGCGAGAATGATG
ATGCTCAATCTGAGTGTCTTGTACATCTCATTGGACTCAAATCTCGCTGC
TACACAACAGGCTCCAGATCAGGCTTCGTCCTTGTACACATTTTGTAACA
TGAAGCGAGAAGAAGCTCCACCCGTGAGCCCTGTACTTTTGGGTTTCTTC
GTTTTTGTGGTTGTGGGTTCCGCTTTCTTTCAGATCATCCGAACTGCTCA
AAGCGGGCCCATTTTTTGAGCCACCAGCCGTGCCATCCGTCTTCGTTCAG
AGAAGTTTGATAAAAATGTTACCAAGCGAGGAAATGTCCCTGTTGGAAAG
GCGGCGATGGATTTGGTCGGTGTGGTGCGAATTGACGGGCCCTTCGCGGG
TTTTAAAATACCATTCTTGTGCACTCGAACGCCCATGCGCGCGAGAATGA
TGATGCTCAATCTGAGTGTCTTGTACATCTCATTGGACTCAAATCTCGCT
GCTACACAACAGGCTCCAGATCAGGCTTCGTCCTTGTACACATTTTGTAA
CATGAAGCGAGAAGAAGCTCCACCCGTGAGCCCTGTACTTTTGGGTTTCT
TCGTTTTTGTGGTTGTGGGTTCCGCTTTCTTTCAGATCATCCGAACTGCT
CAAAGCGGGCCCATTTTTTGAGCCACCAGCCGTGCCATCCGTCTTCGTTC
AGAGAAGTTTGATAAAAATGTTACCAAGCGAGGAAATGTCCCTGTTGGAA
AGGCGGCGATGGATTTGGTCGGTGTGGTGCGAATTGACGGGCCCTTCGCG
GGTTTTAAAATACCATTCTTGTGCACTCGAACGCCCATGCGCGCGAGAAT
GATGATGCTCAATCTGAGTGTCTTGTACATCTCATTGGACTCAAATCTCG
CTGCTACACAACAGGCTCCAGATCAGGCTTCGTCCTTGTACACATTTTGT
AACATG back to top
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