EWM26759.1, cds4066 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|585108847|gb|EWM26759.1| (Endoplasmic reticulum, stress-associated Ramp4 [Nannochloropsis gaditana]) HSP 1 Score: 270.781 bits (691), Expect = 6.430e-92 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF 133
MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF
Sbjct: 1 MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF 133
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|502141013|ref|XP_004504408.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cicer arietinum]) HSP 1 Score: 77.0258 bits (188), Expect = 3.014e-16 Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
M TSR + +R EKF+KN+TKRG+VP K+ + PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct: 1 MTTSRRLAVRKVEKFEKNITKRGSVPE-TTVKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 65
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|1012341727|gb|KYP52927.1| (Stress-associated endoplasmic reticulum protein 2 [Cajanus cajan]) HSP 1 Score: 77.7962 bits (190), Expect = 4.894e-16 Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0
Query: 65 NMATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
NM TSR + R EKF+KN+TKRG VP AK+ + PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct: 49 NMTTSRRLADRKVEKFEKNITKRGFVPE-TTAKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 114
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|695019724|ref|XP_009396884.1| (PREDICTED: probable stress-associated endoplasmic reticulum protein [Musa acuminata subsp. malaccensis]) HSP 1 Score: 76.2554 bits (186), Expect = 6.111e-16 Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
M TSR + R KF KNVTKRG+VP K AK+ + PV P+LLGFF+FVVVGS+ FQIIRTA SG
Sbjct: 1 MTTSRRLADRKIAKFQKNVTKRGSVPE-KTAKKGDNYPVGPILLGFFIFVVVGSSLFQIIRTAMSG 65
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|971510171|dbj|GAQ88028.1| (Ribosome associated membrane protein RAMP4 [Klebsormidium nitens]) HSP 1 Score: 76.2554 bits (186), Expect = 6.523e-16 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0
Query: 68 TSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
++R +++S+KF KN+ KRG VP K +K+E PV P++LGFF+FVVVGSA QIIR AQSG
Sbjct: 4 STRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIRQAQSG 64
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|596217240|ref|XP_007223937.1| (stress-associated endoplasmic reticulum protein 2 [Prunus persica] >gi|645230978|ref|XP_008222180.1| PREDICTED: stress-associated endoplasmic reticulum protein 2 [Prunus mume] >gi|1139797338|gb|ONI29956.1| hypothetical protein PRUPE_1G224500 [Prunus persica]) HSP 1 Score: 75.8702 bits (185), Expect = 9.544e-16 Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
M TSR + R EKF+KN+TKRG VP AK+ + PV P+LLGFFVFVV+GS+ FQIIRTA SG
Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGAVPE-TTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTATSG 65
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|694393679|ref|XP_009372267.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Pyrus x bretschneideri]) HSP 1 Score: 75.8702 bits (185), Expect = 1.041e-15 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
M TSR + R EKF+KN+TKRG VP AK+ + PV P+LLGFF+FVV+GS+ FQIIRTA SG
Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGAVPE-TTAKKAKDYPVGPILLGFFIFVVIGSSLFQIIRTATSG 65
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|225425396|ref|XP_002277156.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Vitis vinifera]) HSP 1 Score: 75.485 bits (184), Expect = 1.161e-15 Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPI 132
M TSR + R EKF+KN+TKRG+VP K+ PV PVLLGFFVFVV+GS+ FQIIRTA SG +
Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGSVPE-TTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGV 67
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|674921492|emb|CDY11821.1| (BnaC03g57570D [Brassica napus]) HSP 1 Score: 77.0258 bits (188), Expect = 1.278e-15 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0
Query: 40 YISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
++S +N+ + P + L F + A R + EKFDKN+TKRG VP K+ + PV P+LLGFFVFVV+GS+ FQIIRTA SG
Sbjct: 31 FLSDSANVTSDSLIPSLSEFLSAFTTTSKRLADR-KIEKFDKNITKRGFVP-ETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTATSG 119
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|388500206|gb|AFK38169.1| (unknown [Medicago truncatula]) HSP 1 Score: 75.485 bits (184), Expect = 1.280e-15 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0
Query: 66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
M TS+ + +R EKF+KN+TKRG+VP K+ PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct: 1 MTTSKRLAVRKVEKFEKNITKRGSVPE-TTVKKGNDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 65 The following BLAST results are available for this feature:
BLAST of EWM26759.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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