EWM26759.1, cds4066 (CDS) Nannochloropsis gaditana

Overview
NameEWM26759.1
Unique Namecds4066
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:799399..799596 -
Alignment locationCM002462.1:799191..799277 -
Alignment locationCM002462.1:798785..798901 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26759.1
ProductEndoplasmic reticulum, stress-associated Ramp4
Orig transcript idgnl|cribi|Naga_100001g36.8270.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:799399..799596 -
CM002462.1supercontigCM002462.1:799191..799277 -
CM002462.1supercontigCM002462.1:798785..798901 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009058biosynthetic process
GO:0042221response to chemical
GO:0006464cellular protein modification process
GO:0007165signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR010580ER_stress-assoc
Homology
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|585108847|gb|EWM26759.1| (Endoplasmic reticulum, stress-associated Ramp4 [Nannochloropsis gaditana])

HSP 1 Score: 270.781 bits (691), Expect = 6.430e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF 133
            MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF
Sbjct:    1 MDLVGVVRIDGPFAGFKIPFLCTRTPMRARMMMLNLSVLYISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPIF 133          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|502141013|ref|XP_004504408.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cicer arietinum])

HSP 1 Score: 77.0258 bits (188), Expect = 3.014e-16
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            M TSR + +R  EKF+KN+TKRG+VP     K+ +  PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct:    1 MTTSRRLAVRKVEKFEKNITKRGSVPE-TTVKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 65          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|1012341727|gb|KYP52927.1| (Stress-associated endoplasmic reticulum protein 2 [Cajanus cajan])

HSP 1 Score: 77.7962 bits (190), Expect = 4.894e-16
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0
Query:   65 NMATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            NM TSR +  R  EKF+KN+TKRG VP    AK+ +  PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct:   49 NMTTSRRLADRKVEKFEKNITKRGFVPE-TTAKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 114          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|695019724|ref|XP_009396884.1| (PREDICTED: probable stress-associated endoplasmic reticulum protein [Musa acuminata subsp. malaccensis])

HSP 1 Score: 76.2554 bits (186), Expect = 6.111e-16
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            M TSR +  R   KF KNVTKRG+VP  K AK+ +  PV P+LLGFF+FVVVGS+ FQIIRTA SG
Sbjct:    1 MTTSRRLADRKIAKFQKNVTKRGSVPE-KTAKKGDNYPVGPILLGFFIFVVVGSSLFQIIRTAMSG 65          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|971510171|dbj|GAQ88028.1| (Ribosome associated membrane protein RAMP4 [Klebsormidium nitens])

HSP 1 Score: 76.2554 bits (186), Expect = 6.523e-16
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0
Query:   68 TSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            ++R  +++S+KF KN+ KRG VP  K +K+E   PV P++LGFF+FVVVGSA  QIIR AQSG
Sbjct:    4 STRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIRQAQSG 64          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|596217240|ref|XP_007223937.1| (stress-associated endoplasmic reticulum protein 2 [Prunus persica] >gi|645230978|ref|XP_008222180.1| PREDICTED: stress-associated endoplasmic reticulum protein 2 [Prunus mume] >gi|1139797338|gb|ONI29956.1| hypothetical protein PRUPE_1G224500 [Prunus persica])

HSP 1 Score: 75.8702 bits (185), Expect = 9.544e-16
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            M TSR +  R  EKF+KN+TKRG VP    AK+ +  PV P+LLGFFVFVV+GS+ FQIIRTA SG
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGAVPE-TTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTATSG 65          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|694393679|ref|XP_009372267.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 75.8702 bits (185), Expect = 1.041e-15
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            M TSR +  R  EKF+KN+TKRG VP    AK+ +  PV P+LLGFF+FVV+GS+ FQIIRTA SG
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGAVPE-TTAKKAKDYPVGPILLGFFIFVVIGSSLFQIIRTATSG 65          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|225425396|ref|XP_002277156.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Vitis vinifera])

HSP 1 Score: 75.485 bits (184), Expect = 1.161e-15
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSGPI 132
            M TSR +  R  EKF+KN+TKRG+VP     K+    PV PVLLGFFVFVV+GS+ FQIIRTA SG +
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGSVPE-TTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRTATSGGV 67          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|674921492|emb|CDY11821.1| (BnaC03g57570D [Brassica napus])

HSP 1 Score: 77.0258 bits (188), Expect = 1.278e-15
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   40 YISLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            ++S  +N+ +    P  +  L  F   +   A R + EKFDKN+TKRG VP     K+ +  PV P+LLGFFVFVV+GS+ FQIIRTA SG
Sbjct:   31 FLSDSANVTSDSLIPSLSEFLSAFTTTSKRLADR-KIEKFDKNITKRGFVP-ETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTATSG 119          
BLAST of EWM26759.1 vs. NCBI_GenBank
Match: gi|388500206|gb|AFK38169.1| (unknown [Medicago truncatula])

HSP 1 Score: 75.485 bits (184), Expect = 1.280e-15
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   66 MATSRAIRLRS-EKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQSG 130
            M TS+ + +R  EKF+KN+TKRG+VP     K+    PV PVLLGFFVFVV+GS+ FQIIRTA SG
Sbjct:    1 MTTSKRLAVRKVEKFEKNITKRGSVPE-TTVKKGNDYPVGPVLLGFFVFVVIGSSLFQIIRTATSG 65          
The following BLAST results are available for this feature:
BLAST of EWM26759.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108847|gb|EWM26759.1|6.430e-92100.00Endoplasmic reticulum, stress-associated Ramp4 [Na... [more]
gi|502141013|ref|XP_004504408.1|3.014e-1662.12PREDICTED: stress-associated endoplasmic reticulum... [more]
gi|1012341727|gb|KYP52927.1|4.894e-1664.18Stress-associated endoplasmic reticulum protein 2 ... [more]
gi|695019724|ref|XP_009396884.1|6.111e-1663.64PREDICTED: probable stress-associated endoplasmic ... [more]
gi|971510171|dbj|GAQ88028.1|6.523e-1657.14Ribosome associated membrane protein RAMP4 [Klebso... [more]
gi|596217240|ref|XP_007223937.1|9.544e-1662.12stress-associated endoplasmic reticulum protein 2 ... [more]
gi|694393679|ref|XP_009372267.1|1.041e-1560.61PREDICTED: stress-associated endoplasmic reticulum... [more]
gi|225425396|ref|XP_002277156.1|1.161e-1560.29PREDICTED: stress-associated endoplasmic reticulum... [more]
gi|674921492|emb|CDY11821.1|1.278e-1547.25BnaC03g57570D [Brassica napus][more]
gi|388500206|gb|AFK38169.1|1.280e-1560.61unknown [Medicago truncatula][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4076rna4076Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications