rna4074, rna4074 (mRNA) Nannochloropsis gaditana

Overview
Namerna4074
Unique Namerna4074
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationCM002462.1:790976..793010 +

Link to JBrowse

Properties
Property NameValue
Productenoyl- hydratase isomerase
Orig transcript idgnl|cribi|Naga_100001g38.8274.mrna
Orig protein idgnl|cribi|Naga_100001g38.8274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:790976..793010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g38gene3920Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4074rna4074-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26763.1cds4064Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4074 ID=rna4074|Name=rna4074|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGTTCGGCTGGCTTCATTTCCTGAGTAGCTGCCAGCAAAGGATGGGTGG
TGGCCGGTGGTTCTATTTCCCGACGCATATCTGGACCCCATCCGGTGGAT
GGTTTCCAAACCCGAAAAACTGGCGTGCCAACACCTTACTGGTCCTGGGC
GGCATCGGAGTGGCTGCTTTCTCGACTTTCTCCCTGTCAGCATCCTTGGA
GCGGCGGCCCATCGCTCCTGCATGGCACATTCCCTCCCAGTCATGGCGAT
TACTCTTGTCGTGTGGGCATGTTTTTAGGGATTGTTTGAGCTCAAGAGAT
GCGTACACTGGTGGATGGCACGACGAAGGCGTGATTGCGACGCTCTCGTA
TCCCATCAGACCTGGTGTCGCATGGATAGTGAGAAGGAGTGAGGGCCCCT
CATGTATGTCAAACTTTTGTTTTAAGCGAGGGAGTGTAGAAGAAGAACAT
TTGGGACGCTGTTTCTGTTGA
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protein sequence of rna4074

>rna4074-protein ID=rna4074-protein|Name=rna4074|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MLFRSGARILGAVRQSRCRLQSTFSQHSLSSSAMSPPSSPPSEEPEATTD
PILVERRALAGTKGGYLLVTLNRPRHSNAMNNATLQELQAVFDRLPADKW
VRAVVLTGAGHAFCGGHDLYQMHDSQGDKQYFERMFARCSRFMLSIQRVP
QPVLAAVNGLATGAGRDGGREGGSGPGASAARLPLRQSNDRRARNLHLYA
IPPSLPSSLPFPRLPAGRCL
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mRNA from alignment at CM002462.1:790976..793010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4074 ID=rna4074|Name=rna4074|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp|location=Sequence derived from alignment at CM002462.1:790976..793010+ (Nannochloropsis gaditana)
AAGCTTATACGCACGCTCTGTCATACTTTCAATTCAAAGCACAGCCGTTT
AAGACACGGGTCTCGCCTAAGGAATTATCCTGTCACGAACCATCCAGCCG
TCTAATTGAGGAGGCTTCAACCATCTTGTGAGTTGTAGAGCACGATTGCC
TTACCCTAGGGTGTAAGGCCCGTTGACGTCTATCGCGACCTGCATCTCCA
ACAGCCGGACGCCAGGGACCAGTCCTGCGTTTGGTATAGAGGGATTGCCA
TAGCGAACAGCATCGATTGCTTCTGACCGCCGCAAAACTGTGTCGTACGA
CCTCGTAGTTTGTCGGGGGATTGATGCAATCACACATCCAGTATGCTCCT
GCAGAGTCTTGCTTATGCACGCAACTCTCCTGCGATTCAATACGACAAGG
AAATGACGCATGATTGCCAAAGTCCCCCCTCTTGGACGCAAGCacatctc
ttccccttctaaATTcaactctccctccctccctctcgagcAGACTCTCC
CGCGATCATGTTGTTCCGGTCCGGAGCTCGAATACTTGGCGCCGTTCGTC
AGAGTCGTTGCAGGCTCCAGTCGACATTTTCTCAGCactctttgtcctcc
tccgccatgtcccctccttcttcgcccccctccgagGAGCCGGAGGCCAC
CACCGACCCTATCCTCGTGGAGCGCCGCGCTCTTGCCGGGACCAAGGGCG
GGTATTTGCTCGTCACCTTAAATCGGCCCCGACACTCGAATGCCATGAAC
AATGCCACCCTTCAGGAGCTTCAGGCAGTCTTTGACCGGCTCCCCGCCGA
CAAGTGGGTCCGCGCCGTGGTTTTGACGGGCGCGGGCCACGCCTTTTGCG
GCGGACACGACCTCTACCAGATGCACGACTCCCAGGGAGACAAGCAGTAT
TTCGAACGCATGTTCGCACGCTGCTCCCGCTTCATGCTCTCCATCCAGCG
TGTTCCTCAgccggtgctggcggcggtcaATGGACTGGCCACAGGGGCAG
GTAGGgatggaggtagggagggagggagtggtccCGGGGCCTCGGCCGCC
AGGCTCCCGCTTCGACAGTCGAACGACCGAAGAGCGAGGAATCTCCATCT
TTAtgcgatccctccctccctcccatcctccctcccttttcccagGCTGC
CAGCTGGTCGCTGCCTGTGACTTGgcgatcgcctcctcccacgcccaaTT
TGCCACCTCCGGCGTCAAACTCGGCCTTTTTTGCGCCACCCCCAGCGTGC
CTCTGAGCCGAAACCTCTCCCGAAAACGGGCATTTGAAATGCTAGTTACT
GGGAAGTACATCCAGGCAGAAAAAGCTCTGGACTGGGGGCTGGTGAACTC
CGTGTGTCCGCACGAGGAGCTTGAGGCGACGGTGCTGCGTCTGGTGACAG
AGATAGCCCAAAACCCGCCCGTGGCGATCTCGATGGGAAAACGATTGTTC
TATTCGCAACTGGAGAAATCTTCGATAGCGGGGGCATGTGcgtggatggg
ggggagagggagaataAGGGGGTCAGGATGGCGATGGTCATCAAGTGGTG
TGATACCATGGTGTAGCGTTGTGTCGCTCACTCTTTCTACTCCTGTTTCT
CATATCATAACACGCTTGTGTCCGCGCTTATTTAGACGATATGGCCGATT
ATGTGATGAGGTACGTAGGGAAATCATCCATAAATGCCGCTCCTCTGTCG
ACCCTTGCTTTTGTATGTAACTTTGTGTGTTGTCTCAGCACTGCCGGAAT
CACCCCGTCACTGCCTCATTGCGTCTCTGATAACATCACAGCACCAACAT
GACGGAAGCCGACACGGAAGAAGGAATAGCGGCCTTTGTAGAAAAGCGAC
CACCAACTTGGAATCtatgaaaaaaaatgatttTAGTATCCAGTGGTGGA
TTGTAAGCACTCATGCCAAGAAGAGACTGtaccaagaaaaagaggaagtg
TCATATTGCCATGTGGATAATAGAAACATGATCTGAAGCACGCAAAACTT
TGCTCCGAAAAGAAGTAAGCCAACATTGCCAAACG
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Coding sequence (CDS) from alignment at CM002462.1:790976..793010+

>rna4074 ID=rna4074|Name=rna4074|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at CM002462.1:790976..793010+ (Nannochloropsis gaditana)
ATGTTGTTCCGGTCCGGAGCTCGAATACTTGGCGCCGTTCGTCAGAGTCG
TTGCAGGCTCCAGTCGACATTTTCTCAGCactctttgtcctcctccgcca
tgtcccctccttcttcgcccccctccgagGAGCCGGAGGCCACCACCGAC
CCTATCCTCGTGGAGCGCCGCGCTCTTGCCGGGACCAAGGGCGGGTATTT
GCTCGTCACCTTAAATCGGCCCCGACACTCGAATGCCATGAACAATGCCA
CCCTTCAGGAGCTTCAGGCAGTCTTTGACCGGCTCCCCGCCGACAAGTGG
GTCCGCGCCGTGGTTTTGACGGGCGCGGGCCACGCCTTTTGCGGCGGACA
CGACCTCTACCAGATGCACGACTCCCAGGGAGACAAGCAGTATTTCGAAC
GCATGTTCGCACGCTGCTCCCGCTTCATGCTCTCCATCCAGCGTGTTCCT
CAgccggtgctggcggcggtcaATGGACTGGCCACAGGGGCAGGTAGGga
tggaggtagggagggagggagtggtccCGGGGCCTCGGCCGCCAGGCTCC
CGCTTCGACAGTCGAACGACCGAAGAGCGAGGAATCTCCATCTTTAtgcg
atccctccctccctcccatcctccctcccttttcccagGCTGCCAGCTGG
TCGCTGCCTGTGA
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Synonyms
Publications