rna4073, rna4073 (mRNA) Nannochloropsis gaditana

Overview
Namerna4073
Unique Namerna4073
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2058
Alignment locationCM002462.1:788778..789893 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g40.8199.mrna
Orig protein idgnl|cribi|Naga_100001g40.8199
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:788778..789893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g40gene3919Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4073rna4073-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26688.1cds4063Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4073 ID=rna4073|Name=rna4073|organism=Nannochloropsis gaditana|type=mRNA|length=2058bp
ATGTTGTCTCGTTTTACCTCGTCGGCCAAGGGCCTTTCGCCCTCGGCAAT
GTCCCGAATCGGCAGCCAGGGGGGAGCTGTTCGAAACCTGACACGAAGTG
GCGCTGCGCAAAAGGCACAGAAGGATTTAGGTGATATCATCGGCATTGAT
CTGGGCACGACAAATTCTTGTGTTGCCATTATGGAAGGCCGTGCTCCTCG
TGTCATTGAAAATGCTGAGGGCGCGCGGACGACGCCCTCTGTAGTGGCGT
TTGCGAATGACGGCCAGCGCTTGGTGGGATTACCTGCGAAGCGTCAGGCA
GTCACCAACCCCGAGAACACCTTGTACGCCGTGAAGCGTCTAATCGGCAG
GAAATTCACGGACAAGGAAGTACAGAACGTGAAAAAGCTAGTACCGTACA
AGATTATCAAGGCCGATAGCTCAGAAGACGCGTGGGTGGAGGCAGGAGGG
AAGCGCCTCTCCCCGTCGCAGGTGGGCTCGATGGTGTTGGGGAAGATGAA
GGAGACGGCGGAAGGGTTCCTAGGGCGGCCCATTACCAAGGCGGTAGTCA
CTGTGCCAGCGTATTTCAATGACTCTCAGCGGCAAGCGACCAAGGATGCC
GGACGCATAGCTGGGCTGGACGTGCAGAGGATCATCAACGAGCCCACGGC
GGCGGCATTAGCCTACGGTCTGGACAAAGCGGAAGGGAAGCTGATCTCGG
TGTTCGATTTGGGGGGAGGCACTTTCGACGTGTCGATATTGGAGATCTCC
GGCGGCGTGTTTGAAGTGAAGGCGACGAACGGGGACACCATGCTGGGGGG
GGAGGATTTCGACGAGGAGCTTTTGAAGCACCTGGCGGCCGAGTTCCGCA
AGGACTCGGGGATCGACCTTTCCAAAGACAGGCTGGCCATGCAGCGCTTG
CGGGAGGCGGCGGAGAAGGCAAAGCGGGAGCTGGACGGCCTGGCTCAGAC
GGAAGTGTCGCTCCCTTTTATCACGGCGGACCAAACGGGTCCCAAGCACT
TGAATGTGAAGGTGTCGCGGGCGCAATTTGAGAAACTTGTGGATTCCTTG
GTCCAGCGCACCATCCAACCCTGCAAGAATTGCCTGAAGGACGCCTCCGT
GGAGAAGAAGGACATAAACGAGGTCCTTCTGGTGGGGGGCATGACCCGGA
TGCCCAAGGTCCAGAGTGTGGTGGAGGACTTCTTCGGACGCAAGCCCAGC
AAGGGCGTGAATCCGGACGAGGTGGTGGCCATGGGCGCGGCCATCCAAGG
AGGCGTCCTCCGGGGGGACGTGAAGGACGTGCTGCTCCTGGACGTGACCC
CGCTCTCCCTGGGCATCGAGACATTGGGCGGGATGTTCACGCGGCTGATT
AACCGAAACACGACGATTCCGACCAAAAAGGGGCAGGTCTTTTCTACGGC
GGCAGACAATCAGTCCCAGGTGCAAATCAAGGTGCTGCAAGGAGAGCGGG
AATTGGCCGCGGACAACAAGTTACTGGGTTCTTTTGACTTGGTCGGCATT
CCTCCCGCCCCTCGCGGCCTTCCCCAGATCGACGTGACCTTCGACATCGA
TGCGGACGGAATCATGCACGTCTCGGCGAAGGACAAGGGCACAGGGAAGG
AACAGGCCATTGTCATCCAGTCGAGTGGTGGCCTGAACGAGGATGAGATC
CAGAACATGGTGAAGGACGCGGAGGCGCACAAGGCGGCGGACGAGGAGAG
GAAGAAGCTGATTGAGGCCCGAAATGAGGCCGACTCGTTAGTCTACAGCA
CCGAAAAATCTTTGACCGAACATGGCGCGAAACTGAGCGACGAAGTCAAG
GAGGAAATTCAAAACACCATTGCAGAGGCAAAGAAGGCATTGGAAGGGGA
GGACGCCGAATTGTTGCAGGAGAAGGTCAAGGCTTTGCAACAAGCCGCTT
TGAAGATCGGGGAGGCCATCTATGGAAAGGGAGGGGCGGGAGCAGGGGGG
CCGACGGGGGAAGGTGGCGAAGGGGCCACAGGGGCAGGAGATAAGGAGAA
TGTGCAGGACGCAGAGTTCAAAGAGAAAGACGAGGAGGCGGGAGCAGGGA
AGAAATAA
back to top

protein sequence of rna4073

>rna4073-protein ID=rna4073-protein|Name=rna4073|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MFGWLHFLSSCQQRMGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLG
GIGVAAFSTFSLSASLERRPIAPAWHIPSQSWRLLLSCGHVFRDCLSSRD
AYTGGWHDEGVIATLSYPIRPGVAWIVRRSEGPSCMSNFCFKRGSVEEEH
LGRCFC
back to top

mRNA from alignment at CM002462.1:788778..789893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4073 ID=rna4073|Name=rna4073|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp|location=Sequence derived from alignment at CM002462.1:788778..789893+ (Nannochloropsis gaditana)
ATGTTCGGCTGGCTTCATTTCCTGTAGGCGGGAGCGTTGCCTGTCAGGTA
GTGTGTCCATGTTACTGTTACTCTCATTTTGGATGCCATGTCTTGAGAGC
CAAACCTGTATTTGCCGGTGCAGGCCAGCCCAGGGCACTGACATGCGGTT
TGGTGGATAGGGCGTCGATGCCCGTCGTCATCTTCACACTCCTCAGATTG
CATTCCCTCGTGCACACACCGACACATATTTCCATTACTGGACGTACAAC
ACAGGAGTAGCTGCCAGCAAAGGATGGGTGGTGGCCGGTGGTTCTATTTC
CCGACGCATATCTGGACCCCATCCGGTGGATGGTTTCCAAACCCGAAAAA
CTGGCGTGCCAACACCTTACTGGTCCTGGGCGGCATCGGAGTGGCTGCTT
TCTCGACTTTCTCCCTGTCAGCATCCTTGGAGGTGAGTCGGTGATGGTGG
TAGGATACTTGGGGGGAAGCGGCTAGACGTGAGGCTTCGAAAACGCAAAG
GTTTCCTGGAAGCGCACGGAAGACTTTGTCTCGGTCACCTCTTTTACGAC
AAAGTCCGCGGATGCCTTTGCGAAAGGAAGACTGAAGGCGTTTAGAGGGA
CATTATGGCTTCGCAGCTATGCTAAGACGGTGTCGCGTCgcaagaaatgg
aggaataTGTAGAAATTGGGCGTGCGCTGGCAGTTTTGAAAGAGCAGAGA
GAGACTGTAATGATATCAAATCTACATCCACTGCCCAGCCGTAAGTCGCC
TCCTTTACGAGACTAATACTTTCGCCAACCACACGGACGCATACACAGCG
GCGGCCCATCGCTCCTGCATGGCACATTCCCTCCCAGTCATGGTGCAAGC
ACGCAGCAGAGGATGACAAATCCTTGTGAGGGGGACAAAGGCGATTACTC
TTGTCGTGTGGGCATGTTTTTAGGGATTGTTTGAGCTCAAGAGATGCGTA
CACTGGTGGATGGCACGACGAAGGCGTGATTGCGACGCTCTCGTATCCCA
TCAGACCTGGTGTCGCATGGATAGTGAGAAGGAGTGAGGGCCCCTCATGT
ATGTCAAACTTTTGTTTTAAGCGAGGGAGTGTAGAAGAAGAACATTTGGG
ACGCTGTTTCTGTTGA
back to top

Coding sequence (CDS) from alignment at CM002462.1:788778..789893+

>rna4073 ID=rna4073|Name=rna4073|organism=Nannochloropsis gaditana|type=CDS|length=1884bp|location=Sequence derived from alignment at CM002462.1:788778..789893+ (Nannochloropsis gaditana)
ATGTTCGGCTGGCTTCATTTCCTGAGTAGCTGCCAGCAAAGGATGGGTGG
TGGCCGGTGGTTCTATTTCCCGACGCATATCTGGACCCCATCCGGTGGAT
GGTTTCCAAACCCGAAAAACTGGCGTGCCAACACCTTACTGGTCCTGGGC
GGCATCGGAGTGGCTGCTTTCTCGACTTTCTCCCTGTCAGCATCCTTGGA
GCGGCGGCCCATCGCTCCTGCATGGCACATTCCCTCCCAGTCATGGCGAT
TACTCTTGTCGTGTGGGCATGTTTTTAGGGATTGTTTGAGCTCAAGAGAT
GCGTACACTGGTGGATGGCACGACGAAGGCGTGATTGCGACGCTCTCGTA
TCCCATCAGACCTGGTGTCGCATGGATAGTGAGAAGGAGTGAGGGCCCCT
CATGTATGTCAAACTTTTGTTTTAAGCGAGGGAGTGTAGAAGAAGAACAT
TTGGGACGCTGTTTCTGTTGAATGTTCGGCTGGCTTCATTTCCTGAGTAG
CTGCCAGCAAAGGATGGGTGGTGGCCGGTGGTTCTATTTCCCGACGCATA
TCTGGACCCCATCCGGTGGATGGTTTCCAAACCCGAAAAACTGGCGTGCC
AACACCTTACTGGTCCTGGGCGGCATCGGAGTGGCTGCTTTCTCGACTTT
CTCCCTGTCAGCATCCTTGGAGCGGCGGCCCATCGCTCCTGCATGGCACA
TTCCCTCCCAGTCATGGCGATTACTCTTGTCGTGTGGGCATGTTTTTAGG
GATTGTTTGAGCTCAAGAGATGCGTACACTGGTGGATGGCACGACGAAGG
CGTGATTGCGACGCTCTCGTATCCCATCAGACCTGGTGTCGCATGGATAG
TGAGAAGGAGTGAGGGCCCCTCATGTATGTCAAACTTTTGTTTTAAGCGA
GGGAGTGTAGAAGAAGAACATTTGGGACGCTGTTTCTGTTGAATGTTCGG
CTGGCTTCATTTCCTGAGTAGCTGCCAGCAAAGGATGGGTGGTGGCCGGT
GGTTCTATTTCCCGACGCATATCTGGACCCCATCCGGTGGATGGTTTCCA
AACCCGAAAAACTGGCGTGCCAACACCTTACTGGTCCTGGGCGGCATCGG
AGTGGCTGCTTTCTCGACTTTCTCCCTGTCAGCATCCTTGGAGCGGCGGC
CCATCGCTCCTGCATGGCACATTCCCTCCCAGTCATGGCGATTACTCTTG
TCGTGTGGGCATGTTTTTAGGGATTGTTTGAGCTCAAGAGATGCGTACAC
TGGTGGATGGCACGACGAAGGCGTGATTGCGACGCTCTCGTATCCCATCA
GACCTGGTGTCGCATGGATAGTGAGAAGGAGTGAGGGCCCCTCATGTATG
TCAAACTTTTGTTTTAAGCGAGGGAGTGTAGAAGAAGAACATTTGGGACG
CTGTTTCTGTTGAATGTTCGGCTGGCTTCATTTCCTGAGTAGCTGCCAGC
AAAGGATGGGTGGTGGCCGGTGGTTCTATTTCCCGACGCATATCTGGACC
CCATCCGGTGGATGGTTTCCAAACCCGAAAAACTGGCGTGCCAACACCTT
ACTGGTCCTGGGCGGCATCGGAGTGGCTGCTTTCTCGACTTTCTCCCTGT
CAGCATCCTTGGAGCGGCGGCCCATCGCTCCTGCATGGCACATTCCCTCC
CAGTCATGGCGATTACTCTTGTCGTGTGGGCATGTTTTTAGGGATTGTTT
GAGCTCAAGAGATGCGTACACTGGTGGATGGCACGACGAAGGCGTGATTG
CGACGCTCTCGTATCCCATCAGACCTGGTGTCGCATGGATAGTGAGAAGG
AGTGAGGGCCCCTCATGTATGTCAAACTTTTGTTTTAAGCGAGGGAGTGT
AGAAGAAGAACATTTGGGACGCTGTTTCTGTTGA
back to top
Synonyms
Publications