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Properties
| Property Name | Value |
|---|
| Product | e3 ubiquitin-protein ligase rnf14 |
| Orig transcript id | gnl|cribi|Naga_100003g78.1787.mrna |
| Orig protein id | gnl|cribi|Naga_100003g78.1787 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1009187..1012133 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna407 ID=rna407|Name=rna407|organism=Nannochloropsis gaditana|type=mRNA|length=2430bp
ATGATAGTTGTCGATTTACAGAGCAAAGAAATTGTAAAATTTTGTCGGTT
GCAAGTCATGCTACGAGGTATATCGTTGCCCGGCTTAAGCGATCGAGGTC
CTCTCCGTTGGACAGCAGCCTCTTTGGGTGGTCTTCGAAATATCCGACAA
GGAAGTCGGGGAGGGGACAAGGACGTGCAAGAGTTCCTGGAGGAGGCCGT
CACGCCCCGCGGAGCTCAGGGACCTCGGAGTGGAGCCGGTCGTGGCTCCG
GCTCTTACGAGCGTTTTATTAAAACCTACAAGGAGACAGTGCTTACCGAA
GAGGACAAGCGGTTTAAGACGTGGTCCAATTGGAAGGATCAATTGGAGGA
TTTCGAGAACGACGGGCAAGAGGACCTGAGCGGGGGCGAGGAAGGCTACT
TGGGCAGCATGGTTGATATGGAAAGTTCCGGGAGAGGGGCCAAGAAGGGC
CGGGGGAGAGGTCGCTCAGTGCGTGGCCGCAGTGTCCGGCGCTCTCGGGG
CGGACGTGACGAGGAGGGCGGAGAGGACGTGGGGTCGTACTTCGACTGGA
CCGAAGGGTCCCTGTTCATCCCCGACCTCGTCGTCCGCGAGGGGGACGAG
GGAGGCACGGTATCGGACCGCATCCGCGTGGAGGATGACCTCCAGCTCCG
TCTCAATAAGCTGCTCTGGCGGCGGCTGAAGCTGAGGGCCCGGGACTTGG
ACCAGCACGTGCCAAGGGCGTACCGGCGGGGGAGAGCCGTCCAAAGGGCC
ATGGCGGAGGCGCGCGCGAGGGAAGCAAGAGCGGGCACGGGCATACCAGG
GGCGAAGGGGGCAGGCCTGGAAGTGCAGAGTGGTACAGGAGAAGATGGCC
TCGGGACTGTGAGAGAGACAAGAGAGACGTCGGGCGGGCCAGGGAGCCGG
GGCCAGGTGGGGGAGGGCCTCCAGGAGGGAAGCCCGGAACCCGTCGCTGG
CGGTGTGGCGCCCGCTCTGGATCCTGACATTCAAGTGGTGAAGAGATTGA
ACCAGGCTAGGACGTTGGAAGCCATTGAGGATGAAATAGGGCGGCTCATG
GTGGAGGGCAAGGTGGACGTGGAGATGGAGGAAGAGCAGATTCGAGCGCG
GCGGCTCCAGGCGAGGGCGAGGAGGATGAGTTCCGGGGAGTATGACCATG
GGGAGGACATAGACGGGGGCGGGGAGGAGGAGGAGGGCGACGGGGAGGAG
CGGCAGGGCTCAAAGATGGACGACTGGACACGGATCCACGTGCAGGACTT
GGAGGAGGCCGTGGGGGAGGAGGTGCCCACCCTGGACGCGGACGAAGAAG
GCTTTGAAGCCTTTAGGGAGTATGCTGAGCAGCTGATTGAGGCGGGCGGC
GTCATCGAGTATCGTTCCACGCGGGCAGGCAAATACGACCGGGAGATGGC
CCTACCAGCGCCCCTGGCCACGGGGCGGGCGCTCGAGCAGGCCTTGCGCA
GAGACCGGACAGCCGTGGAGAAAGTGTCTGCGTCTAAGCACCGTTTTGGC
GGTAAAGAAAAAGGGACGGCTCCGATGTCGGCTTCGGATTTTGAGGCATC
AGCAGCCTGCGCCTGGCTGGCACTCAATAAGAATGTGAGCATGGGAGACA
CCACCAGGATGGAACTCAGCGGGGCCCTGGCGACAACCCTTCAGCGCCTG
CAAGAGAAGCCTGGACGGCTCGAGCGCGTGCGTGCTCACGACAAAAAACA
AGCATCGCGTGGTGATCGACGCAACAGGTTTCACAGGATGCTCCGAGCCA
AGAAAAAAAAGGAGGAGGAGGCCGCCGCCGCTGCAGCGGCGGCGGCCAAG
ATTGATGTGGACGGAGGCTCGTCGTCATCAGTTGCGGTGGAAGCAGGAGA
AAGGGAGAAGGCTCACGACGGAGGAGCACCAGCTACGGAAAATGGAACGG
TGAGCATAATGGGTATCGGCGGCAAGAGCGTGAAAGCTGCTCAGAGTAAG
GGCAGGCGGCGGCAGCCTGCTGAGCTTCGTATTCAAAAGGATCTGGCAGA
AGTGGAGCTGGGTACGGCGGCAACTCTGATCTTCCCGAATCCGAACGACT
TGACGGACTTCATCGTCGAGGTTTCACCGGAGTCTGGCTTTTGGACCGGC
GCCAAGTTTACGTTCACCTTCCGCTTTCCAGCCGAGTACCCGCATACGCC
GCCCAAGGTGACCTGCCAGACTCGGATCCTGCACCCGAACATCGACTGGG
AGGGCAACGTGTGTTTGAACATTCTGCGAGAAGAGTGGAAGCCGATTCTG
GACGTGAACGCGATTATCTATGGCCTCCTCCATCTCTTTGCTGAGCCCAA
CCCGGACGACCCCCTCAATAAGGAGGCAGCTGAGCTCTTCCGGGCGGACG
CGCGGCAATTTGAACGTGTCGTCAAGCAGACCTTGCGTGGATTGAGTTAT
CAAGGGCACACATTTGAAAGACTCCTCTAG back to topprotein sequence of rna407 >rna407-protein ID=rna407-protein|Name=rna407|organism=Nannochloropsis gaditana|type=polypeptide|length=661bp
MESSEGLRLEHTEAHSKSNSRQSSVGLRTFSFRDPPALMPCGSVSSSSHI
MTNSSAALPYCGDLDAARKARDSPAVRLLTQYRDQQRSADSSPLSLSRNS
SAGNPMDGQAPPPAASSFSSLTRRLLELGFKATMRGKRNQKSSDASDAER
QNEALAGPLQAAAEQSHSVSRHQPQFDLNTEKGAARAVSGAGETGSPVVR
LNQSHHSSSGRGMLCQTLYEAAGGVTGEGKQESDNWPPSYYLRGGETSKR
LPTTFIDKSNTGQTIVPAAAAAIGACAVYKDSPQHMVEEEMLEDLVLMTC
VPTSLAYRLDCKCAHAFSTETLYGCIKAALIDDLIPACPLANHPDAPQRC
NYLLTQKEVEHVLNRHAPPSQLPAQDRKLLCFRRGRLVDGGLGWVSERVT
EAFLRKGKIAAGCIECPNGRCSYWVEPTRPLEKQRVDCPKCLMAFCSLCK
RPYHFRCSCDEVMTITKQWLEWQQHGRAPYLTKMAREDSSYQAALDVFKS
RRAAHVQEVRTAEQNWGLLVADENYKASRCKRCPHCNRVIERVDGCDTMV
CGQNAHGGNIQNGCGQAFDWNDALLYVADIGEKRSIVPFQEVPPAEIARV
EHQIMDGTPVKCDVCSAKIMGPLAMCINCPSFSCCIRCQNKHTRGHVLRL
YMDGTGGNGHA back to topmRNA from alignment at CM002455.1:1009187..1012133- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna407 ID=rna407|Name=rna407|organism=Nannochloropsis gaditana|type=mRNA|length=2947bp|location=Sequence derived from alignment at CM002455.1:1009187..1012133- (Nannochloropsis gaditana)
TTCGCAAGAAGACGTAGAGTTTTTCCAAGATTACTTCTGTACAGTGTCTG
ACATTCCTTTTCAAGCTACTTTTCCTCGTGAAGGCTTAATGTCGTTAACG
GCAACAGCCAAACAGCCACCAACGGCTGGGAGTCCGTTGCGTCAATCTTC
TCTGAGAATCATTCCATGCTCTTGTTATTCTTTGTATCCCCATCTCCGTT
ATGATAAATGTGTTTATAGACTAACGAGCACAATGTTAACGACTTTACGA
ATCTATATGCTCCCCTCTTCGGGTTCTGATAACTTCGAAAGTGAAAATAG
GAAGCAGATATGGTAGACAGCTAAATCGATCATCTTCATTTGGAATTGAT
ATCATAAAAAATCATTACGATCCTCACCAAAGGTGGGTTGAAAGGTTGTT
TGGTGGGGAGAGCGACGGAGGAGGACGGAAAGGAGAGCGGCTGCGAGGGT
CCCCGAGCACAGGCGCAAGATTGTCAAGCTTGGATCATGGAATCATCGGA
AGGATTGCGTCTAGAACACACTGAAGCGCACAGTAAATCAAATAGTAGAC
AATCCAGCGTGGGTTTACGTACATTCTCATTCCGTGACCCTCCTGCGTTG
ATGCCTTGTGGCTCGGTGTCTTCGTCATCGCATATCATGACAAATTCATC
GGCGGCCCTGCCCTATTGTGGGGATTTGGACGCAGCTCGGAAAGCCCGTG
ACTCTCCAGCTGTCAGGTATGTGATCAACCTTATAGGTATGAGATTGGAT
GTGCATAATGGGCTTGATGTCAAGCACATCCCATAGCTACTTTGCATTAC
TTATAAACTAAGTCGTCCGCCATTTTCTCTGCAACTCCATCGCCTAGGCT
TCTTACTCAATACAGAGATCAGCAGAGATCTGCTGATTCTTCACCTTTGT
CTTTGAGCAGAAACAGCAGCGCAGGCAATCCCATGGATGGCCAAGCGCCG
CCTCCAGCGGCTTCATCTTTTTCATCCCTTACCCGACGGCTCCTCGAACT
AGGTTTCAAAGCCACAATGCGCGGAAAAAGAAACCAGAAATCTAGTGACG
CTAGTGACGCTGAAAGGCAAAATGAAGCCTTAGCCGGTCCTCTGCAGGCG
GCGGCAGAGCAAAGTCACTCCGTTTCCCGGCATCAACCGCAGTTTGACTT
GAATACTGAAAAAGGGGCCGCACGGGCTGTCTCAGGCGCCGGCGAGACGG
GTAGCCCGGTCGTCAGGTTGAATCAGAGTCATCACTCTTCCAGTGGCCGT
GGCATGCTATGTCAAACATTGTACGAGGCAGCAGGCGGTGTCACTGGGGA
AGGTAAGCAGGAGAGCGATAACTGGCCCCCTAGCTACTACTTACGAGGCG
GGGAAACATCGAAACGCCTTCCGACCACATTTATCGATAAGTCCAATACG
GGCCAAACGATTGTACCAGCGGCAGCGGCAGCGATTGGGGCATGCGCTGT
CTACAAAGACAGTCCCCAACACATGGTAGAAGAGGAGATGCTCGAGGACT
TGGTACTGATGACGTGCGTGCCGACCTCGCTTGCGTACCGGCTGGATTGC
AAATGTGCGCATGCCTTTAGTACGGAAACTTTATATGGCTGCATCAAGGC
GGCTTTAATAGATGATTTGATCCCTGCCTGTCCCTTGGCAAATCATCCTG
ACGCGCCTCAGCGCTGTAATTACTTGCTCACTCAAAAGGAAGTAGAGCAC
GTCTTGAATCGTCACGCGCCGCCCTCGCAACTCCCTGCTCAGGACCGGAA
ACTACTGTGCTTCCGACGAGGACGGCTTGTCGATGGAGGTCTGGGCTGGG
TCAGCGAACGGGTGACAGAGGCATTTTTGCGGAAGGGGAAAATCGCCGCG
GGATGCATCGAGTGTCCAAACGGACGGTGTAGCTACTGGGTAGAGCCCAC
TCGCCCGCTTGAGAAGCAACGCGTCGACTGCCCGAAGTGTTTGATGGCTT
TCTGCTCTCTCTGCAAGCGCCCGTATCATTTCCGCTGCTCCTGCGACGAG
GTGATGACCATCACCAAGCAATGGCTGGAGTGGCAGCAGCACGGACGGGC
CCCCTACCTGACGAAGATGGCGAGGGAGGATTCTTCCTACCAGGCAGCCC
TGGATGTTTTCAAAAGCCGACGAGCCGCTCATGTGCAGGAGGTCCGTACA
GCGGAGCAGAACTGGGGATTGTTGGTCGCGGACGAGAACTACAAAGCATC
TCGGTGCAAACGATGTCCCCACTGCAATCGAGTGATTGAGCGCGTCGACG
GCTGTGACACCATGGTGTGTGGGCAGAACGCACACGGAGGCAACATCCAA
AACGGATGTGGCCAGGCATTCGACTGGAACGATGCTCTCTTGTACGTAGC
AGACATTGGAGAGAAGCGGTCGATCGTTCCCTTCCAAGAAGTGCCACCCG
CTGAGATTGCCCGCGTCGAACACCAGATCATGGACGGGACTCCCGTCAAG
TGCGATGTCTGCTCCGCAAAAATAATGGGGCCTCTGGCTATGTGCATTAA
TTGTCCATCCTTCTCCTGCTGCATTCGCTGCCAAAACAAGCACACTCGAG
GTCATGTCCTTCGTCTCTACATGGACGGAACGGGGGGAAACGGACATGCA
TAGCATGGAGATGTGGATGAAGACCATTTTGCAGGTCGTGAAGCCTGGCT
AATCAATCAATTAGAGTTTGTCCTTCGAAGCAAGAGAGAACAGTACGCCG
GGACCGGACCAGGAAGCTCAGTGAGTCGCGTGGCGCACTCGAACGAGAAG
CTTCACAAGGGCTTCGCTGAGCATGACCGGAAAAAATAGGTACAAAAGAG
CAACGCCCTTAAGGCGGTTCTTATAGGATCACGAATAGTTTACACAAAAG
CTGAAAAAAGCATGATAACAGTGATGGTCAAGCTGGACTGTCTTCAGACA
CACCCCTGAGTCCTTTGCAGGCCGCTTGTAATGCTGTGCTGGTCTTG back to topCoding sequence (CDS) from alignment at CM002455.1:1009187..1012133- >rna407 ID=rna407|Name=rna407|organism=Nannochloropsis gaditana|type=CDS|length=3972bp|location=Sequence derived from alignment at CM002455.1:1009187..1012133- (Nannochloropsis gaditana)
GCTTCTTACTCAATACAGAGATCAGCAGAGATCTGCTGATTCTTCACCTT
TGTCTTTGAGCAGAAACAGCAGCGCAGGCAATCCCATGGATGGCCAAGCG
CCGCCTCCAGCGGCTTCATCTTTTTCATCCCTTACCCGACGGCTCCTCGA
ACTAGGTTTCAAAGCCACAATGCGCGGAAAAAGAAACCAGAAATCTAGTG
ACGCTAGTGACGCTGAAAGGCAAAATGAAGCCTTAGCCGGTCCTCTGCAG
GCGGCGGCAGAGCAAAGTCACTCCGTTTCCCGGCATCAACCGCAGTTTGA
CTTGAATACTGAAAAAGGGGCCGCACGGGCTGTCTCAGGCGCCGGCGAGA
CGGGTAGCCCGGTCGTCAGGTTGAATCAGAGTCATCACTCTTCCAGTGGC
CGTGGCATGCTATGTCAAACATTGTACGAGGCAGCAGGCGGTGTCACTGG
GGAAGGTAAGCAGGAGAGCGATAACTGGCCCCCTAGCTACTACTTACGAG
GCGGGGAAACATCGAAACGCCTTCCGACCACATTTATCGATAAGTCCAAT
ACGGGCCAAACGATTGTACCAGCGGCAGCGGCAGCGATTGGGGCATGCGC
TGTCTACAAAGACAGTCCCCAACACATGGTAGAAGAGGAGATGCTCGAGG
ACTTGGTACTGATGACGTGCGTGCCGACCTCGCTTGCGTACCGGCTGGAT
TGCAAATGTGCGCATGCCTTTAGTACGGAAACTTTATATGGCTGCATCAA
GGCGGCTTTAATAGATGATTTGATCCCTGCCTGTCCCTTGGCAAATCATC
CTGACGCGCCTCAGCGCTGTAATTACTTGCTCACTCAAAAGGAAGTAGAG
CACGTCTTGAATCGTCACGCGCCGCCCTCGCAACTCCCTGCTCAGGACCG
GAAACTACTGTGCTTCCGACGAGGACGGCTTGTCGATGGAGGTCTGGGCT
GGGTCAGCGAACGGGTGACAGAGGCATTTTTGCGGAAGGGGAAAATCGCC
GCGGGATGCATCGAGTGTCCAAACGGACGGTGTAGCTACTGGGTAGAGCC
CACTCGCCCGCTTGAGAAGCAACGCGTCGACTGCCCGAAGTGTTTGATGG
CTTTCTGCTCTCTCTGCAAGCGCCCGTATCATTTCCGCTGCTCCTGCGAC
GAGGTGATGACCATCACCAAGCAATGGCTGGAGTGGCAGCAGCACGGACG
GGCCCCCTACCTGACGAAGATGGCGAGGGAGGATTCTTCCTACCAGGCAG
CCCTGGATGTTTTCAAAAGCCGACGAGCCGCTCATGTGCAGGAGGTCCGT
ACAGCGGAGCAGAACTGGGGATTGTTGGTCGCGGACGAGAACTACAAAGC
ATCTCGGTGCAAACGATGTCCCCACTGCAATCGAGTGATTGAGCGCGTCG
ACGGCTGTGACACCATGGTGTGTGGGCAGAACGCACACGGAGGCAACATC
CAAAACGGATGTGGCCAGGCATTCGACTGGAACGATGCTCTCTTGTACGT
AGCAGACATTGGAGAGAAGCGGTCGATCGTTCCCTTCCAAGAAGTGCCAC
CCGCTGAGATTGCCCGCGTCGAACACCAGATCATGGACGGGACTCCCGTC
AAGTGCGATGTCTGCTCCGCAAAAATAATGGGGCCTCTGGCTATGTGCAT
TAATTGTCCATCCTTCTCCTGCTGCATTCGCTGCCAAAACAAGCACACTC
GAGGTCATGTCCTTCGTCTCTACATGGACGGAACGGGGGGAAACGGACAT
GCATAGATGGAATCATCGGAAGGATTGCGTCTAGAACACACTGAAGCGCA
CAGTAAATCAAATAGTAGACAATCCAGCGTGGGTTTACGTACATTCTCAT
TCCGTGACCCTCCTGCGTTGATGCCTTGTGGCTCGGTGTCTTCGTCATCG
CATATCATGACAAATTCATCGGCGGCCCTGCCCTATTGTGGGGATTTGGA
CGCAGCTCGGAAAGCCCGTGACTCTCCAGCTGTCAGGCTTCTTACTCAAT
ACAGAGATCAGCAGAGATCTGCTGATTCTTCACCTTTGTCTTTGAGCAGA
AACAGCAGCGCAGGCAATCCCATGGATGGCCAAGCGCCGCCTCCAGCGGC
TTCATCTTTTTCATCCCTTACCCGACGGCTCCTCGAACTAGGTTTCAAAG
CCACAATGCGCGGAAAAAGAAACCAGAAATCTAGTGACGCTAGTGACGCT
GAAAGGCAAAATGAAGCCTTAGCCGGTCCTCTGCAGGCGGCGGCAGAGCA
AAGTCACTCCGTTTCCCGGCATCAACCGCAGTTTGACTTGAATACTGAAA
AAGGGGCCGCACGGGCTGTCTCAGGCGCCGGCGAGACGGGTAGCCCGGTC
GTCAGGTTGAATCAGAGTCATCACTCTTCCAGTGGCCGTGGCATGCTATG
TCAAACATTGTACGAGGCAGCAGGCGGTGTCACTGGGGAAGGTAAGCAGG
AGAGCGATAACTGGCCCCCTAGCTACTACTTACGAGGCGGGGAAACATCG
AAACGCCTTCCGACCACATTTATCGATAAGTCCAATACGGGCCAAACGAT
TGTACCAGCGGCAGCGGCAGCGATTGGGGCATGCGCTGTCTACAAAGACA
GTCCCCAACACATGGTAGAAGAGGAGATGCTCGAGGACTTGGTACTGATG
ACGTGCGTGCCGACCTCGCTTGCGTACCGGCTGGATTGCAAATGTGCGCA
TGCCTTTAGTACGGAAACTTTATATGGCTGCATCAAGGCGGCTTTAATAG
ATGATTTGATCCCTGCCTGTCCCTTGGCAAATCATCCTGACGCGCCTCAG
CGCTGTAATTACTTGCTCACTCAAAAGGAAGTAGAGCACGTCTTGAATCG
TCACGCGCCGCCCTCGCAACTCCCTGCTCAGGACCGGAAACTACTGTGCT
TCCGACGAGGACGGCTTGTCGATGGAGGTCTGGGCTGGGTCAGCGAACGG
GTGACAGAGGCATTTTTGCGGAAGGGGAAAATCGCCGCGGGATGCATCGA
GTGTCCAAACGGACGGTGTAGCTACTGGGTAGAGCCCACTCGCCCGCTTG
AGAAGCAACGCGTCGACTGCCCGAAGTGTTTGATGGCTTTCTGCTCTCTC
TGCAAGCGCCCGTATCATTTCCGCTGCTCCTGCGACGAGGTGATGACCAT
CACCAAGCAATGGCTGGAGTGGCAGCAGCACGGACGGGCCCCCTACCTGA
CGAAGATGGCGAGGGAGGATTCTTCCTACCAGGCAGCCCTGGATGTTTTC
AAAAGCCGACGAGCCGCTCATGTGCAGGAGGTCCGTACAGCGGAGCAGAA
CTGGGGATTGTTGGTCGCGGACGAGAACTACAAAGCATCTCGGTGCAAAC
GATGTCCCCACTGCAATCGAGTGATTGAGCGCGTCGACGGCTGTGACACC
ATGGTGTGTGGGCAGAACGCACACGGAGGCAACATCCAAAACGGATGTGG
CCAGGCATTCGACTGGAACGATGCTCTCTTGTACGTAGCAGACATTGGAG
AGAAGCGGTCGATCGTTCCCTTCCAAGAAGTGCCACCCGCTGAGATTGCC
CGCGTCGAACACCAGATCATGGACGGGACTCCCGTCAAGTGCGATGTCTG
CTCCGCAAAAATAATGGGGCCTCTGGCTATGTGCATTAATTGTCCATCCT
TCTCCTGCTGCATTCGCTGCCAAAACAAGCACACTCGAGGTCATGTCCTT
CGTCTCTACATGGACGGAACGGGGGGAAACGGACATGCATAGATGGAATC
ATCGGAAGGATTGCGTCTAGAACACACTGAAGCGCACAGTAAATCAAATA
GTAGACAATCCAGCGTGGGTTTACGTACATTCTCATTCCGTGACCCTCCT
GCGTTGATGCCTTGTGGCTCGGTGTCTTCGTCATCGCATATCATGACAAA
TTCATCGGCGGCCCTGCCCTATTGTGGGGATTTGGACGCAGCTCGGAAAG
CCCGTGACTCTCCAGCTGTCAG back to top
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