rna4052, rna4052 (mRNA) Nannochloropsis gaditana

Overview
Namerna4052
Unique Namerna4052
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2361
Alignment locationCM002462.1:715448..715978 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g61.8161.mrna
Orig protein idgnl|cribi|Naga_100001g61.8161
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:715448..715978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g61gene3898Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4052rna4052-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26650.1cds4042Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4052 ID=rna4052|Name=rna4052|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp
ATGGGGCAAGTTCCATCAGCGTCCGCTGTGGTAAATGTTGGTCAGCCTAA
CAGGACGGAAGAAGAGTGGCCACAGACTTTCGATGAAAACAAGACGCACG
TCTTCTCGGATGCGGGCGTTTCCGGGATTTCCCGCATGCTCCACCCTGGC
GCCACCCGTTTAAGTCTGGGGAACAGTGGCGTCGCAGGCACCGGGTCGAA
TTGGTGGGTGGATGCCATGGTCTCGACGCCCCTCTTCCCGCATGGTCGTA
GCCCCGCCAGCGTGGGAGAGAGGCAGGCCCGTCACCAGAAACGCGTGAGC
AAATTCCGCGTATTCGCGGATGGAGTTGTCTTTGAAGGGCCGGAGGCTAT
GGCCATTGGGGACACGCACGATCTGTCCAAGGGCTACGAGTGCGTGATGG
GGCGGCCTGTGACGCGGGTGACGGTCGGGGACAAACGCGCTCAGCAAGTC
TTGGTCGCCTTCGCCGACAACAAATTCTGGGCCGTGCCCTCCCGGCAGGG
CTTCTCGCGGCATCTCGGCGTCTCCCTTGTACTGGGGGACAAGACTGCCC
GCGGGCCCAAGCATACGCTGCGGGTGGGGGACATTCTGCGTCTGGGCTCT
GTGGGTCTCCTCGTCTCAGAAATGCGAACCGAGGCAGACGGGGGCAAAAG
CCGCACGGTTTCCCAGGAGGTATTGGAGCAGATTAGGGAGGATGTTCAGA
CGGCGCCGCGCCAGGTCTTGGCACCTTTACGGAAGGACTTTTTTATGGGA
AACAGCGTCCACGAGGAAGAGAGGACGGAAGAGGTAGGGAGGAGAGTGGT
GATGGTGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGGGGGGGTGGACA
ATGACACGGGGACTGAGCACAGCGTGAGTTCGTCGGGAAGCGCGGGCCAC
CAGTCCCGGAGCCTAAAGGGGGGACTGGCTGGCCCAGAGGCAGATTCCGG
CGAGGGCGGGAACGGCAGGTATCAGTGCTACATTTGCATGGACTCGGAGG
AGGAGGACGGGGATGTATTGATCGCTCCCTGTCAGTGCAAGGGCTCGACT
GCTTTGGTGCACGTTAAGTGCTTGCAGCGCCTTTTGAGCACGGGGGACGC
GGCCAAGCGGACAAGCGTCACTTCTACCAAGCACCAGAACTACACCTGTA
AGATTTGCAAGGCGCGCTACAAGACGCACGTCTGCCTGCCCGACGGAAGC
CTTCTGCCTTTGCTCAACCCGACACTGATGCCCCCCTACCTGACCTTGGT
TGTGATCACACGGCATGAGTCGCACCCTGACCTGTTCAACACAATTTTCC
AGCTCTCCTTTGCCCGGGCCGCCGAGCTCAGCATGGGTCGTTCTCAGGGT
TGCGACGTGGTAATTGGCTACCGGACTGTGTCCACCAGGCACGCCACCAT
CTCGTACTCAAAGGGAGAATTCTACTACCAGGACGCCCGCTCCTCGAACG
GCTCTCTGCTTTACCTGCGGGGGCCGTTAGAGATCCCGACGTCTCGGTCC
ATCCGCTTGCGCATGGGCCGATCCGTGCTCTCCCTGCGAGGGCGACACGC
GCTGCAGCTTTCTTCCTTGCCCCGACGGGCCGCCGCGGACGCCTGGCGCT
GGCTTTCTGCCACTATGGGGGGCAGTGGTAATGGGGGGGGAGCTGGTGAG
GGAGAGGGTCAAGGCGTGGAAGGGCGGCGGGGCCGGAGGAACGGCGCTGA
GGAGGGGACGGAGAGAAGAGGGAATGAAGCTCGAGACCTGGAGGGCAGAT
TGGGTTTGGAGCTGCTCCGGGATTTGCACATGGGCCGCTTTCAAGCGGCG
AGGGCCAGGGATAGCAGCCTCTTGTCGGAGGAACGGGAGGCAGGTCTGGG
GGAGGCGGAGCGTGTCGTCTGGCGGTGGGGCTCTTCGGCGGGGATGGGGG
ACGGAAGCGAGGGGACCATCGGGAGCCGCTCAGGAACCAGCTCTATGAAT
AGAATGGTAGACAGTCGCAGTGGTGGCGGGGGGGGTGGAGGGAGTCTGCT
GCGTTCTAGTCTACAGCAGGTTGATCCACCGCTAGAGGACCAACGGCAGT
CGCCAGCCGTTGGAGGCCCCGAGGGCCTGTGGAGGGATAGCACTGAAGAT
TTCATGAATCCTGGACATACGCTTACGAGAGAAAGGGGGGAGGAGATAGA
GTCACCCGCAGCACGTCCGGCAGGTGGAGGAGCACGAGAAAGTACAATAC
CACAGAGAGCAGCAGCCATTGGAGCCGAGAGTGGGCAAGACCTTGAGCTG
TCGTTCTCTTTGCCCCCATGTCAACCTCGCCTTCGTCAGACAGACTTGAT
ATCCGCACCATCGAGGCGAGTGGTTCTCGAAAGAACGCATAGCAGTCGGG
TTGAGAGCTGA
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protein sequence of rna4052

>rna4052-protein ID=rna4052-protein|Name=rna4052|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MVIDSIQYDIISSWESYACSSSTITAEAKSSRNRTIAPTRTRVCKSAISM
SHMMNVLAHNKTFCVPCLNSSRAFRASQRGLERAMSAPATLYRLHDIPIA
SSWSLGLRDDFLKLSDRPQRQSQKANCCRSRREIDPDCIACGATRFCVES
TSVDTQEHAYHQMQQTTRCFADVGRC
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mRNA from alignment at CM002462.1:715448..715978+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4052 ID=rna4052|Name=rna4052|organism=Nannochloropsis gaditana|type=mRNA|length=531bp|location=Sequence derived from alignment at CM002462.1:715448..715978+ (Nannochloropsis gaditana)
ATGGTAATTGATAGCATACAATACGACATAATTAGTTCATGGGAGAGTTA
tgcttgctcctcctccacgatcACAGCAGAAGCCAAATCCTCAAGAAATC
GGACAATTGCCCCTACAAGAACGCGAGTCTGTAAAAGTGCTATAAGTATG
AGCCATATGATGAATGTCTTAGCTCACAACAAAACGTTTTGCGTACCTTG
TCTAAACTCTTCTCGAGCATTTCGAGCTTCACAGAGGGGCCTTGAGAGGG
CGATGAGTGCACCGGCAACATTATATCGTCTGCACGACATTCCAATCGCT
TCATCCTGGTCTCTAGGTCTGCGAGACGATTTTCTGAAACTTTCTGATCG
TCCACAGCGACAGAGTCAAAAAGCAAATTGCTGTCGATCAAGACGCGAAA
TTGATCCAGATTGTATTGCATGTGGAGCGACACGGTTTTGTGTCGAAAGT
ACTTCTGTAGACACACAAGAGCACGCGTACCATCAGATGCAGCAGACGAC
GAGATGCTTTGCAGACGTGGGTCGATGTTAA
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Coding sequence (CDS) from alignment at CM002462.1:715448..715978+

>rna4052 ID=rna4052|Name=rna4052|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002462.1:715448..715978+ (Nannochloropsis gaditana)
ATGGTAATTGATAGCATACAATACGACATAATTAGTTCATGGGAGAGTTA
tgcttgctcctcctccacgatcACAGCAGAAGCCAAATCCTCAAGAAATC
GGACAATTGCCCCTACAAGAACGCGAGTCTGTAAAAGTGCTATAAGTATG
AGCCATATGATGAATGTCTTAGCTCACAACAAAACGTTTTGCGTACCTTG
TCTAAACTCTTCTCGAGCATTTCGAGCTTCACAGAGGGGCCTTGAGAGGG
CGATGAGTGCACCGGCAACATTATATCGTCTGCACGACATTCCAATCGCT
TCATCCTGGTCTCTAGGTCTGCGAGACGATTTTCTGAAACTTTCTGATCG
TCCACAGCGACAGAGTCAAAAAGCAAATTGCTGTCGATCAAGACGCGAAA
TTGATCCAGATTGTATTGCATGTGGAGCGACACGGTTTTGTGTCGAAAGT
ACTTCTGTAGACACACAAGAGCACGCGTACCATCAGATGCAGCAGACGAC
GAGATGCTTTGCAGACGTGGGTCGATGTTAA
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Synonyms
Publications