rna4050, rna4050 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4050
Unique Name	rna4050
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1693
Alignment location	CM002462.1:710851..712459 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF2231, transmembrane
Orig transcript id	gnl\|cribi\|Naga_100001g63.8207.mrna
Orig protein id	gnl\|cribi\|Naga_100001g63.8207
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:710851..712459 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g63	gene3896	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4050	rna4050-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26696.1	cds4040	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:710851..712459-
coding sequence from alignment at CM002462.1:710851..712459-

mRNA sequence

>rna4050 ID=rna4050|Name=rna4050|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp
TGTCTCGATGATAGCATTGCTGAACGAAGAATACCAAAATAGCTCTTGTC
TTGTATGGTAAGGGCGAGCTCGTACAGTACATTCTCCTTGCTTTTTCCAA
TGCCATTACGTAACCTGTACACGACAGACCAACACAGGATCAAGAATCAA
AATAATCGAGCAGAAATAAATCCGCAATCATTTCGAGACCACGAAAAGAG
AACAAGAAAATGGATTTCTTACCGGCGCATCTGCGCGTCCCTTTGGCTGT
CGCGAGTTACTCAGTATGCTCTGGAACCATGCTTCTCTTCAACAAACTGG
CAATGCACTACGTCCCCGTTCCAAGCCTAGTGACAGTGATTCAGCTCCTT
TCCGCGGTGGTTATCATCCTCTCGCTCCAATGGGTCCGTGTCATTCCTCC
CGACCCTCTTGAGTCCAGTAAAGTGAAACCATACCTACTGTACACTATAG
CATTCGTTCTCGGTGTGTACTGCAATATGCGCGCCCTGGCCCATTCCAAC
GTCGAGACCGTCATCATTTTTCGGTCATGCACGCCTTTGGCCGTGGCTCT
TTGCGATTACGTTTTTCTTGGCCGAGAGCTGCCCTCCCAACGCTCTTGTC
TCGCGCTCTTGACGATTGCATTGGGCGCATATGGCTATGTCCAGACTGAT
TCGCAGTTTAAGATGGATGGCCTTGCAGCCTACACGTGGGCGATCCTCTA
TTTTGTGACGATTTGCTTCGAGATGACGTACGGGAAAAAGATCACAAGTG
GCATAAGGTTCAACAGCATGTGGGGTCCCACATTTTATACGAACTTTTTA
TCCGTCACTCCCATGTTCCTGTTGGGCTATCTGATGGGCGACTTCAAAGA
CTTCTCCGCCGCGGAAGGGACGAGGGGCTCACAGGGCGCCGAGCTATGGA
AGTGGACAACGGCGGGCGTAGTCATGCTGGTGGTGTCCTCCTTGATGGGC
ACATTGATCGGCTACACCAGCTGGAGCTGCCGGTCGCTCGTCTCGGCCAC
CACCTTCACGCTGGTCGGGGTGATCAACAAGTTCATCACCATCCTCCTGA
ACGTCTTCATTTGGGACAAGCACGCCTCGCCTTTAGGGATCATGGCCTTG
GTCCTCTGCTTGATCGGGGGCTCTTTCTATAAGCAGGCGCCTATGAGGCC
CACCGACCGATCGCTGAATTCCATCGAATTTTTTGCGATGGGGACGGAGC
TCGAAAAAGACGAGTTGGCTGAGGTTGAGCGAGAAGCGAATGCAAAGATC
ACTGAATTGGATACTGTTCCTCTCATCGTATCCACGGAGGGGAAAAAACT
GGCCTTTTTCGGGCATCAAGCAGATGATCGGCAGGCGCCCGCCGGGGCTG
TCTAGCCAAAGAAAGAGACTTCTGAGTGTAGTGGGTGATAACAATGGAAT
ATGACTCCTGCCGTACAAGATGGCTTGATGCAAGTTATCATCATGGCCAC
AAAACCGTCAGGAAGTGGGACAGGGTTTGCAATATCAGCACAAAGGTTAG
GACCCCGAATTTCGACAATCTTTGATAGCTTGACTGAATGTGTGGCAATC
AAACTCTTATGAATGGTATTGAAGAAATAATACCAAAAATTATGCCACTC
GTTGAGGACGTCTCATGAGTACTGTGTTTCGCGGTGTATTTTTCTGTAAT
TGCCAACCGTGGGCATGTCTATTTACAAGCCTCTCACGCATTT

protein sequence of rna4050

>rna4050-protein ID=rna4050-protein|Name=rna4050|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEA
GWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHML
LNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLV
YKHGMGFVWTGVPIAAERQRLVPA

mRNA from alignment at CM002462.1:710851..712459-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4050 ID=rna4050|Name=rna4050|organism=Nannochloropsis gaditana|type=mRNA|length=1609bp|location=Sequence derived from alignment at CM002462.1:710851..712459- (Nannochloropsis gaditana)
CAAGACACCACCACTGTCACACAGAGAATCCGCGCTATGCTTTCCCCCCC
TCGGTCCATGTTTTGCTCAATATCCCGAGACAGCTCGAAGCCTGTGACCT
TCGAATCAGCGTGAGAGGGCGCTTGCCCCGCGATCACAGGCATGCGTGAC
CTCCCTGCACACTCCCGGGGCCTCCGCGCCGATGGTCAAGCAGACGCCGC
GTCACGGACACGCAGGACAAGCTCTCGGCCGGCTTAAGTGTACTGAATGG
ATCTTGTCGGATTTTGACATAGATCCTTGGGCAGTTTTCAGGCCATTAGT
ACTCGAATTTTTCAAGAAGAATCCTGGTGTAGCTTCGGAACACGGTCTCG
GAACGTGCAATGTTCTGCTTCCGGTGGGGTCATGACACGCATAGGTAAGC
ACATGACCAGCAGCAACAATGGAAGAGGCCTTCATTTGAGAAAGCTTTCA
TATCTTGATGAGGGTTAGTGAAAACCTGTTTTCTCTATGGATTTTTCTTT
GGCTTTGATAGCTTCTCTCACCACCTTTTAAGTGCCCACTTCAAGTTCAT
CGTCCTATTTTGTGTGGCATTACAAGAACAGGGTAAAAATGCCATCGAAA
GCCAATATCTGGGGCCACCCCATCCACCCTATGTTAGTAGCCTTCCCCAT
TGTCCTTTTTATTATGACTCTCATCGCCGACGTCGTATACGAGGCCGGTT
GGGCGGGCTCGGATTGGTCCCAATTTGCGTATATTCTGCTCGTCGGCGGC
GTTGCCGCAGCCGTAGCAGCAGCTATAACAGGCTTGGTTGAATATTCCAT
TATCATGTACGTTTTTTAATTGGTTTTCCGAGCTGAACGTCTGTAGAGTG
CAGGTGAACGTGTATGCGCGTTAGACAAGTGGTATATTTAATCCGCTCAC
GCATTTTCGCAATTTTTTGGCCTAACATCCAGAGGCGAGGAAGTAAAGCA
GACTGCCACCGCCCACATGCTTCTTAATGCTGGAGTTGTCATGTTACAAG
TAATAAATCTTAGGTACGCACACATTTAGGAAACATTGCTTGTTCCGGTT
TGGACCGACCCCCAATTTAATTATGTCGATGCAAAAAACGATAGCTACCG
TGGTCGCGCGAAAGGGAATCATTACTGGAGAAATGGCTGGATTTTTAGCC
TTGTTAGCGTCCTCCTCCTCGCAATTTCTGGATGGCTTGGCCAAGACCTT
GTCTACAAGCATGGGATGGGGGTGAGTTCTTGCGGCAATGGGAGGGAAAG
AACGAATTAGCGGCATCCGCGCCATCTGTGTTCTTACTGCGACATTTCTC
AAGAATGAAAACTTTGAAAAATGAAAGTAAGATTCTCTAATTATTGTTAT
ATTGCGCACCTACCCCCGCGGACTACACTTTAATACATTGCACAGTTTGT
ATGGACCGGCGTTCCTATAGCTGCGGAGCGTCAACGGCTCGTGCCAGCAT
GAAAGTGAAAGAGGAGAAACAACTGAGCAAATGTAACGTACATTTTCAAA
ATGCGTGAGAGGCTTGTAAATAGACATGCCCACGGTTGGCAATTACAGAA
AAATACACCGCGAAACACAGTACTCATGAGACGTCCTCAACGAGTGGCAT
AATTTTTGG

Coding sequence (CDS) from alignment at CM002462.1:710851..712459-

>rna4050 ID=rna4050|Name=rna4050|organism=Nannochloropsis gaditana|type=CDS|length=2625bp|location=Sequence derived from alignment at CM002462.1:710851..712459- (Nannochloropsis gaditana)
TTTGTATGGACCGGCGTTCCTATAGCTGCGGAGCGTCAACGGCTCGTGCC
AGCATGACTACCGTGGTCGCGCGAAAGGGAATCATTACTGGAGAAATGGC
TGGATTTTTAGCCTTGTTAGCGTCCTCCTCCTCGCAATTTCTGGATGGCT
TGGCCAAGACCTTGTCTACAAGCATGGGATGGGGAGGCGAGGAAGTAAAG
CAGACTGCCACCGCCCACATGCTTCTTAATGCTGGAGTTGTCATGTTACA
AGTAATAAATCTTAGGGTAAAAATGCCATCGAAAGCCAATATCTGGGGCC
ACCCCATCCACCCTATGTTAGTAGCCTTCCCCATTGTCCTTTTTATTATG
ACTCTCATCGCCGACGTCGTATACGAGGCCGGTTGGGCGGGCTCGGATTG
GTCCCAATTTGCGTATATTCTGCTCGTCGGCGGCGTTGCCGCAGCCGTAG
CAGCAGCTATAACAGGCTTGGTTGAATATTCCATTATCATATGTTCTGCT
TCCGGTGGGGTCATGACACGCATAGTTTGTATGGACCGGCGTTCCTATAG
CTGCGGAGCGTCAACGGCTCGTGCCAGCATGACTACCGTGGTCGCGCGAA
AGGGAATCATTACTGGAGAAATGGCTGGATTTTTAGCCTTGTTAGCGTCC
TCCTCCTCGCAATTTCTGGATGGCTTGGCCAAGACCTTGTCTACAAGCAT
GGGATGGGGAGGCGAGGAAGTAAAGCAGACTGCCACCGCCCACATGCTTC
TTAATGCTGGAGTTGTCATGTTACAAGTAATAAATCTTAGGGTAAAAATG
CCATCGAAAGCCAATATCTGGGGCCACCCCATCCACCCTATGTTAGTAGC
CTTCCCCATTGTCCTTTTTATTATGACTCTCATCGCCGACGTCGTATACG
AGGCCGGTTGGGCGGGCTCGGATTGGTCCCAATTTGCGTATATTCTGCTC
GTCGGCGGCGTTGCCGCAGCCGTAGCAGCAGCTATAACAGGCTTGGTTGA
ATATTCCATTATCATATGTTCTGCTTCCGGTGGGGTCATGACACGCATAG
TTTGTATGGACCGGCGTTCCTATAGCTGCGGAGCGTCAACGGCTCGTGCC
AGCATGACTACCGTGGTCGCGCGAAAGGGAATCATTACTGGAGAAATGGC
TGGATTTTTAGCCTTGTTAGCGTCCTCCTCCTCGCAATTTCTGGATGGCT
TGGCCAAGACCTTGTCTACAAGCATGGGATGGGGAGGCGAGGAAGTAAAG
CAGACTGCCACCGCCCACATGCTTCTTAATGCTGGAGTTGTCATGTTACA
AGTAATAAATCTTAGGGTAAAAATGCCATCGAAAGCCAATATCTGGGGCC
ACCCCATCCACCCTATGTTAGTAGCCTTCCCCATTGTCCTTTTTATTATG
ACTCTCATCGCCGACGTCGTATACGAGGCCGGTTGGGCGGGCTCGGATTG
GTCCCAATTTGCGTATATTCTGCTCGTCGGCGGCGTTGCCGCAGCCGTAG
CAGCAGCTATAACAGGCTTGGTTGAATATTCCATTATCATATGTTCTGCT
TCCGGTGGGGTCATGACACGCATAGTTTGTATGGACCGGCGTTCCTATAG
CTGCGGAGCGTCAACGGCTCGTGCCAGCATGACTACCGTGGTCGCGCGAA
AGGGAATCATTACTGGAGAAATGGCTGGATTTTTAGCCTTGTTAGCGTCC
TCCTCCTCGCAATTTCTGGATGGCTTGGCCAAGACCTTGTCTACAAGCAT
GGGATGGGGAGGCGAGGAAGTAAAGCAGACTGCCACCGCCCACATGCTTC
TTAATGCTGGAGTTGTCATGTTACAAGTAATAAATCTTAGGGTAAAAATG
CCATCGAAAGCCAATATCTGGGGCCACCCCATCCACCCTATGTTAGTAGC
CTTCCCCATTGTCCTTTTTATTATGACTCTCATCGCCGACGTCGTATACG
AGGCCGGTTGGGCGGGCTCGGATTGGTCCCAATTTGCGTATATTCTGCTC
GTCGGCGGCGTTGCCGCAGCCGTAGCAGCAGCTATAACAGGCTTGGTTGA
ATATTCCATTATCATATGTTCTGCTTCCGGTGGGGTCATGACACGCATAG
TTTGTATGGACCGGCGTTCCTATAGCTGCGGAGCGTCAACGGCTCGTGCC
AGCATGACTACCGTGGTCGCGCGAAAGGGAATCATTACTGGAGAAATGGC
TGGATTTTTAGCCTTGTTAGCGTCCTCCTCCTCGCAATTTCTGGATGGCT
TGGCCAAGACCTTGTCTACAAGCATGGGATGGGGAGGCGAGGAAGTAAAG
CAGACTGCCACCGCCCACATGCTTCTTAATGCTGGAGTTGTCATGTTACA
AGTAATAAATCTTAGGGTAAAAATGCCATCGAAAGCCAATATCTGGGGCC
ACCCCATCCACCCTATGTTAGTAGCCTTCCCCATTGTCCTTTTTATTATG
ACTCTCATCGCCGACGTCGTATACGAGGCCGGTTGGGCGGGCTCGGATTG
GTCCCAATTTGCGTATATTCTGCTCGTCGGCGGCGTTGCCGCAGCCGTAG
CAGCAGCTATAACAGGCTTGGTTGAATATTCCATTATCATATGTTCTGCT
TCCGGTGGGGTCATGACACGCATAG

Synonyms

Publications