EWM26696.1, cds4040 (CDS) Nannochloropsis gaditana

Overview
NameEWM26696.1
Unique Namecds4040
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:712066..712100 -
Alignment locationCM002462.1:711654..711878 -
Alignment locationCM002462.1:711447..711527 -
Alignment locationCM002462.1:711239..711365 -
Alignment locationCM002462.1:711008..711064 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26696.1
Productprotein of unknown function DUF2231, transmembrane
Orig transcript idgnl|cribi|Naga_100001g63.8207.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:712066..712100 -
CM002462.1supercontigCM002462.1:711654..711878 -
CM002462.1supercontigCM002462.1:711447..711527 -
CM002462.1supercontigCM002462.1:711239..711365 -
CM002462.1supercontigCM002462.1:711008..711064 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019251DUF2231_TM
Homology
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|585108784|gb|EWM26696.1| (protein of unknown function DUF2231, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 353.214 bits (905), Expect = 2.990e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA 174
            MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA
Sbjct:    1 MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA 174          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1125564883|gb|OLE73797.1| (hypothetical protein AUG12_03810 [Acidobacteria bacterium 13_1_20CM_2_57_8])

HSP 1 Score: 108.612 bits (270), Expect = 4.143e-27
Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 0
Query:   15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            M S A++ GHPIHPMLV FPI L++ + I D+VY AG     W   A+  ++GGV  A+ AA+ G ++Y  +    VK+ AT HM+LN  VV L V NL  R  A  +     G I S+V + ++A+SGWLG  LVY H +G
Sbjct:    1 MGSPASVHGHPIHPMLVVFPIGLWVFSFICDIVYHAGSYNIFWKGVAFYTMLGGVLGALVAAVPGFIDYLSLSDRRVKRIATTHMVLNLIVVALFVFNLGVRLNASPDLELL-GLILSIVGLGIMAVSGWLGGSLVYVHQVG 141          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1085469924|gb|OGW33862.1| (hypothetical protein A2010_16435 [Nitrospirae bacterium GWD2_57_9] >gi|1085489144|gb|OGW51203.1| hypothetical protein A2078_00130 [Nitrospirae bacterium GWC2_57_9])

HSP 1 Score: 105.916 bits (263), Expect = 5.880e-26
Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAE 167
            M  +     HPIHPML+  PI L+I +L AD+++ AG     WS  AY  + GG+  A+ AAI G ++Y  +    VKQ AT HMLLN G ++L +IN   RG   G+      ++ S++ VL +  SGWLG  +VY HGM    T V    E
Sbjct:    1 MKDRIRFKNHPIHPMLIPLPIGLWIFSLAADIIFRAG-GNPSWSTVAYYSMAGGILGAILAAIPGFLDYLDMGPSRVKQVATQHMLLNVGALVLFIINFMIRG--GGDPTAVTPFVLSIIGVLGIIASGWLGGHMVYVHGMAVDETEVCAPVE 150          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|917469163|ref|WP_052075580.1| (DUF2231 domain-containing protein [Sphingomonas taxi])

HSP 1 Score: 104.375 bits (259), Expect = 2.486e-25
Identity = 58/140 (41.43%), Postives = 81/140 (57.86%), Query Frame = 0
Query:   17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            S A ++GHP+HPMLV FPIV FI  LI D+ Y  G A   WS F+  L+  G+     AA+TG+++Y+        + AT HM++N  V +++++N     R         G   S++SVLLL IS WLG  LVYKH +G
Sbjct:   19 STAKLFGHPLHPMLVPFPIVCFIGALITDLAY-LGSANVQWSNFSIWLITAGLVMGGLAALTGIIDYAGDRRVRAARPATPHMIINLSVFVIEIVNAFVHSRDGWTSVVPTGLTLSVISVLLLGISAWLGGSLVYKHRVG 157          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|695172018|gb|AIT08108.1| (membrane protein [Sphingomonas taxi])

HSP 1 Score: 100.138 bits (248), Expect = 7.279e-24
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0
Query:   21 IWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            ++GHP+HPMLV FPIV FI  LI D+ Y  G A   WS F+  L+  G+     AA+TG+++Y+        + AT HM++N  V +++++N     R         G   S++SVLLL IS WLG  LVYKH +G
Sbjct:    1 MFGHPLHPMLVPFPIVCFIGALITDLAY-LGSANVQWSNFSIWLITAGLVMGGLAALTGIIDYAGDRRVRAARPATPHMIINLSVFVIEIVNAFVHSRDGWTSVVPTGLTLSVISVLLLGISAWLGGSLVYKHRVG 135          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|739679510|ref|WP_037534307.1| (DUF2231 domain-containing protein [Sphingomonas sp. RIT328] >gi|612094369|gb|EZP52818.1| hypothetical protein BW41_02180 [Sphingomonas sp. RIT328])

HSP 1 Score: 99.7525 bits (247), Expect = 1.314e-23
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 0
Query:   17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            S A+++GHP+HPMLV FPIV F+  LI D+ Y    A   WS F+  L+ GG+     AA+TG+++Y+        + ATAHM++N  V +++++N     R         G   S ++V LLA+S WLG  LVYKH +G
Sbjct:   10 STASLFGHPLHPMLVPFPIVGFVGALITDLAYLNS-ANVQWSNFSIWLITGGLVMGGFAALTGIIDYAGDKRVRAARPATAHMIINISVFVIEIVNAFVHSRDGWTAVVPTGLTLSAIAVALLAVSAWLGGSLVYKHRVG 148          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|494655111|ref|WP_007413055.1| (hypothetical protein [Pedosphaera parvula] >gi|223896300|gb|EEF62742.1| conserved hypothetical protein [bacterium Ellin514])

HSP 1 Score: 99.3673 bits (246), Expect = 1.957e-23
Identity = 58/155 (37.42%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQ 169
            M + A+I  HPIH ML+AFPI L+  +LI D++Y   W+G++W   AY  + GG+  A+ AAI G ++   I   ++++    HM +N  +V L V+N   R  +  +   +   I S+V +LLL+ISGWLG +LV+ + +  V  G P    RQ
Sbjct:    1 METTASIKKHPIHVMLIAFPIGLWGFSLICDLIYFFHWSGNEWETVAYFTMAGGIITALIAAIPGFLDLLSITEPKLRRIGLTHMTINLVIVALYVVNFFIRRNSSMD--IKIPLILSIVGILLLSISGWLGGELVHVYRVS-VAEGSPTKLPRQ 152          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|947819972|ref|WP_056481313.1| (DUF2231 domain-containing protein [Sphingomonas sp. Leaf208] >gi|944604288|gb|KQM56158.1| hypothetical protein ASE69_00230 [Sphingomonas sp. Leaf208])

HSP 1 Score: 98.9821 bits (245), Expect = 2.989e-23
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query:   17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            S A ++GHP+HPMLV FPIV FI  L+ D+ Y    A   WS F+  L+  G+     AA+TG+++Y+        + AT HM++N GV ++++ N     R         G   S++SV+LL +S WLG  LVYKH +G
Sbjct:   17 STAKLFGHPLHPMLVPFPIVCFIGALLTDLAYLKS-ANIMWSNFSIWLITAGLVMGGLAAVTGMIDYAGDRRVRAARPATPHMIINLGVFVIELFNAFIHSRDGWTSVVPTGLTLSVISVVLLGVSAWLGGSLVYKHRVG 155          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|738068795|ref|WP_036027682.1| (DUF2231 domain-containing protein [Bradyrhizobium yuanmingense])

HSP 1 Score: 98.2117 bits (243), Expect = 6.045e-23
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 0
Query:   11 HRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEE-VKQTATA--HMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            + V++ S A I GHPIHPMLV  PI  F+  L+ D+ Y A  A   W+ F+  LL+ G+   V AAI GL+++   +G   V+  A A  H++ NA V++L ++NL    R      W +G   S ++VL+L I+GWLG  LVY+HG+G
Sbjct:    3 YDVRVRSTAQIAGHPIHPMLVPIPITCFVGALLTDIAYVAS-AEIMWANFSAWLLLAGIVFGVLAAIAGLIDF---LGNRLVRAQAPAWPHLIGNAVVLILSIVNLMIHMRDGWTSVWPSGLALSALTVLILPITGWLGWALVYRHGVG 147          
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1049726601|emb|SCB45387.1| (Uncharacterized membrane protein [Bradyrhizobium yuanmingense])

HSP 1 Score: 98.2117 bits (243), Expect = 6.948e-23
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 0
Query:   11 HRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEE-VKQTATA--HMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
            + V++ S A I GHPIHPMLV  PI  F+  L+ D+ Y A  A   W+ F+  LL+ G+   V AAI GL+++   +G   V+  A A  H++ NA V++L ++NL    R      W +G   S ++VL+L I+GWLG  LVY+HG+G
Sbjct:   14 YDVRVRSTAQIAGHPIHPMLVPIPITCFVGALLTDIAYVAS-AEIMWANFSAWLLLAGIVFGVLAAIAGLIDF---LGNRLVRAQAPAWPHLIGNAVVLILSIVNLMIHMRDGWTSVWPSGLALSALTVLILPITGWLGWALVYRHGVG 158          
The following BLAST results are available for this feature:
BLAST of EWM26696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108784|gb|EWM26696.1|2.990e-123100.00protein of unknown function DUF2231, transmembrane... [more]
gi|1125564883|gb|OLE73797.1|4.143e-2744.37hypothetical protein AUG12_03810 [Acidobacteria ba... [more]
gi|1085469924|gb|OGW33862.1|5.880e-2640.52hypothetical protein A2010_16435 [Nitrospirae bact... [more]
gi|917469163|ref|WP_052075580.1|2.486e-2541.43DUF2231 domain-containing protein [Sphingomonas ta... [more]
gi|695172018|gb|AIT08108.1|7.279e-2441.18membrane protein [Sphingomonas taxi][more]
gi|739679510|ref|WP_037534307.1|1.314e-2340.00DUF2231 domain-containing protein [Sphingomonas sp... [more]
gi|494655111|ref|WP_007413055.1|1.957e-2337.42hypothetical protein [Pedosphaera parvula] >gi|223... [more]
gi|947819972|ref|WP_056481313.1|2.989e-2339.29DUF2231 domain-containing protein [Sphingomonas sp... [more]
gi|738068795|ref|WP_036027682.1|6.045e-2340.94DUF2231 domain-containing protein [Bradyrhizobium ... [more]
gi|1049726601|emb|SCB45387.1|6.948e-2340.94Uncharacterized membrane protein [Bradyrhizobium y... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4050rna4050Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications