EWM26696.1, cds4040 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|585108784|gb|EWM26696.1| (protein of unknown function DUF2231, transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 353.214 bits (905), Expect = 2.990e-123 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA 174
MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA
Sbjct: 1 MFCFRWGHDTHRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQRLVPA 174
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1125564883|gb|OLE73797.1| (hypothetical protein AUG12_03810 [Acidobacteria bacterium 13_1_20CM_2_57_8]) HSP 1 Score: 108.612 bits (270), Expect = 4.143e-27 Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 0
Query: 15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
M S A++ GHPIHPMLV FPI L++ + I D+VY AG W A+ ++GGV A+ AA+ G ++Y + VK+ AT HM+LN VV L V NL R A + G I S+V + ++A+SGWLG LVY H +G
Sbjct: 1 MGSPASVHGHPIHPMLVVFPIGLWVFSFICDIVYHAGSYNIFWKGVAFYTMLGGVLGALVAAVPGFIDYLSLSDRRVKRIATTHMVLNLIVVALFVFNLGVRLNASPDLELL-GLILSIVGLGIMAVSGWLGGSLVYVHQVG 141
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1085469924|gb|OGW33862.1| (hypothetical protein A2010_16435 [Nitrospirae bacterium GWD2_57_9] >gi|1085489144|gb|OGW51203.1| hypothetical protein A2078_00130 [Nitrospirae bacterium GWC2_57_9]) HSP 1 Score: 105.916 bits (263), Expect = 5.880e-26 Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 0
Query: 15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAE 167
M + HPIHPML+ PI L+I +L AD+++ AG WS AY + GG+ A+ AAI G ++Y + VKQ AT HMLLN G ++L +IN RG G+ ++ S++ VL + SGWLG +VY HGM T V E
Sbjct: 1 MKDRIRFKNHPIHPMLIPLPIGLWIFSLAADIIFRAG-GNPSWSTVAYYSMAGGILGAILAAIPGFLDYLDMGPSRVKQVATQHMLLNVGALVLFIINFMIRG--GGDPTAVTPFVLSIIGVLGIIASGWLGGHMVYVHGMAVDETEVCAPVE 150
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|917469163|ref|WP_052075580.1| (DUF2231 domain-containing protein [Sphingomonas taxi]) HSP 1 Score: 104.375 bits (259), Expect = 2.486e-25 Identity = 58/140 (41.43%), Postives = 81/140 (57.86%), Query Frame = 0
Query: 17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
S A ++GHP+HPMLV FPIV FI LI D+ Y G A WS F+ L+ G+ AA+TG+++Y+ + AT HM++N V +++++N R G S++SVLLL IS WLG LVYKH +G
Sbjct: 19 STAKLFGHPLHPMLVPFPIVCFIGALITDLAY-LGSANVQWSNFSIWLITAGLVMGGLAALTGIIDYAGDRRVRAARPATPHMIINLSVFVIEIVNAFVHSRDGWTSVVPTGLTLSVISVLLLGISAWLGGSLVYKHRVG 157
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|695172018|gb|AIT08108.1| (membrane protein [Sphingomonas taxi]) HSP 1 Score: 100.138 bits (248), Expect = 7.279e-24 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0
Query: 21 IWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
++GHP+HPMLV FPIV FI LI D+ Y G A WS F+ L+ G+ AA+TG+++Y+ + AT HM++N V +++++N R G S++SVLLL IS WLG LVYKH +G
Sbjct: 1 MFGHPLHPMLVPFPIVCFIGALITDLAY-LGSANVQWSNFSIWLITAGLVMGGLAALTGIIDYAGDRRVRAARPATPHMIINLSVFVIEIVNAFVHSRDGWTSVVPTGLTLSVISVLLLGISAWLGGSLVYKHRVG 135
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|739679510|ref|WP_037534307.1| (DUF2231 domain-containing protein [Sphingomonas sp. RIT328] >gi|612094369|gb|EZP52818.1| hypothetical protein BW41_02180 [Sphingomonas sp. RIT328]) HSP 1 Score: 99.7525 bits (247), Expect = 1.314e-23 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 0
Query: 17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
S A+++GHP+HPMLV FPIV F+ LI D+ Y A WS F+ L+ GG+ AA+TG+++Y+ + ATAHM++N V +++++N R G S ++V LLA+S WLG LVYKH +G
Sbjct: 10 STASLFGHPLHPMLVPFPIVGFVGALITDLAYLNS-ANVQWSNFSIWLITGGLVMGGFAALTGIIDYAGDKRVRAARPATAHMIINISVFVIEIVNAFVHSRDGWTAVVPTGLTLSAIAVALLAVSAWLGGSLVYKHRVG 148
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|494655111|ref|WP_007413055.1| (hypothetical protein [Pedosphaera parvula] >gi|223896300|gb|EEF62742.1| conserved hypothetical protein [bacterium Ellin514]) HSP 1 Score: 99.3673 bits (246), Expect = 1.957e-23 Identity = 58/155 (37.42%), Postives = 90/155 (58.06%), Query Frame = 0
Query: 15 MPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGFVWTGVPIAAERQ 169
M + A+I HPIH ML+AFPI L+ +LI D++Y W+G++W AY + GG+ A+ AAI G ++ I ++++ HM +N +V L V+N R + + + I S+V +LLL+ISGWLG +LV+ + + V G P RQ
Sbjct: 1 METTASIKKHPIHVMLIAFPIGLWGFSLICDLIYFFHWSGNEWETVAYFTMAGGIITALIAAIPGFLDLLSITEPKLRRIGLTHMTINLVIVALYVVNFFIRRNSSMD--IKIPLILSIVGILLLSISGWLGGELVHVYRVS-VAEGSPTKLPRQ 152
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|947819972|ref|WP_056481313.1| (DUF2231 domain-containing protein [Sphingomonas sp. Leaf208] >gi|944604288|gb|KQM56158.1| hypothetical protein ASE69_00230 [Sphingomonas sp. Leaf208]) HSP 1 Score: 98.9821 bits (245), Expect = 2.989e-23 Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query: 17 SKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
S A ++GHP+HPMLV FPIV FI L+ D+ Y A WS F+ L+ G+ AA+TG+++Y+ + AT HM++N GV ++++ N R G S++SV+LL +S WLG LVYKH +G
Sbjct: 17 STAKLFGHPLHPMLVPFPIVCFIGALLTDLAYLKS-ANIMWSNFSIWLITAGLVMGGLAAVTGMIDYAGDRRVRAARPATPHMIINLGVFVIELFNAFIHSRDGWTSVVPTGLTLSVISVVLLGVSAWLGGSLVYKHRVG 155
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|738068795|ref|WP_036027682.1| (DUF2231 domain-containing protein [Bradyrhizobium yuanmingense]) HSP 1 Score: 98.2117 bits (243), Expect = 6.045e-23 Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 0
Query: 11 HRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEE-VKQTATA--HMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
+ V++ S A I GHPIHPMLV PI F+ L+ D+ Y A A W+ F+ LL+ G+ V AAI GL+++ +G V+ A A H++ NA V++L ++NL R W +G S ++VL+L I+GWLG LVY+HG+G
Sbjct: 3 YDVRVRSTAQIAGHPIHPMLVPIPITCFVGALLTDIAYVAS-AEIMWANFSAWLLLAGIVFGVLAAIAGLIDF---LGNRLVRAQAPAWPHLIGNAVVLILSIVNLMIHMRDGWTSVWPSGLALSALTVLILPITGWLGWALVYRHGVG 147
BLAST of EWM26696.1 vs. NCBI_GenBank
Match: gi|1049726601|emb|SCB45387.1| (Uncharacterized membrane protein [Bradyrhizobium yuanmingense]) HSP 1 Score: 98.2117 bits (243), Expect = 6.948e-23 Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 0
Query: 11 HRVKMPSKANIWGHPIHPMLVAFPIVLFIMTLIADVVYEAGWAGSDWSQFAYILLVGGVAAAVAAAITGLVEYSIIIGEE-VKQTATA--HMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMG 156
+ V++ S A I GHPIHPMLV PI F+ L+ D+ Y A A W+ F+ LL+ G+ V AAI GL+++ +G V+ A A H++ NA V++L ++NL R W +G S ++VL+L I+GWLG LVY+HG+G
Sbjct: 14 YDVRVRSTAQIAGHPIHPMLVPIPITCFVGALLTDIAYVAS-AEIMWANFSAWLLLAGIVFGVLAAIAGLIDF---LGNRLVRAQAPAWPHLIGNAVVLILSIVNLMIHMRDGWTSVWPSGLALSALTVLILPITGWLGWALVYRHGVG 158 The following BLAST results are available for this feature:
BLAST of EWM26696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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