rna4049, rna4049 (mRNA) Nannochloropsis gaditana

Overview
Namerna4049
Unique Namerna4049
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1227
Alignment locationCM002462.1:708993..710961 +

Link to JBrowse

Properties
Property NameValue
ProductUAA transporter
Orig transcript idgnl|cribi|Naga_100001g64.8098.mrna
Orig protein idgnl|cribi|Naga_100001g64.8098
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:708993..710961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g64gene3895Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4049rna4049-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26587.1cds4039Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4049 ID=rna4049|Name=rna4049|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp
ATGGGAGAGGCACGGCGCAGCAACCATGCACATTCTCAACGAGCTTGTCG
GCTACAGGGTAGCCGGGTATGGCTTGCTGCAGGGATGTTGCTATCTTACG
CAGTGTTGTCAGTTGCCTTTCACCTGTCTCCTACACGGGTCACGGTTTCA
GCGCTAGTGGCACACCCAAAAAATTCTTTCCCACCCTCGCGAAGGTCGCT
GGTGCCATCGATGGTGTGCGCAGCAAGATCACGTACGAATGTGGGCATGG
TCCGGAGCCGCTCTGCCTTGTTTTATCCGCGGCACTGCCGAGGGGCCGTG
AAGATGCACAGCAGTGCATTAAGTAGCCTGGGAATAACAGAGTTAGAGAT
AATCACCCGCCTGCTCATGGCAACGTTCGCAGGTGCCTCCATTGGCTTTG
AACGTCGGTATTCGGAGCGTCCGGCGGGACTGCGCACGATGGCTCTAGTC
TCCCTGGGCGCCGCAATCTTCACCATCATCAGCCTGGGCATCCCGGGAGA
CAAATCGCGCATGGCGGCCTCGGTGGCCTCGGGCGTGGGTTTCATCGGGG
CCGGCGTCATCTCGCAGAATGGCTTCGAGGACTCCTCCAGGTCGGGCGGG
CGGCGCATCCAGCAAGTGAACGGTTTGACCACGGCCACCGCCATCTGGGT
CTCGGCGGCCCTGGGCGTCTCGAGCGGGGCGGGACTAAACCTCCTGACCT
TCATCGGGGCCGCGCTCGCTGTCTGCGTCCTGCGCGTCGGACGCTTCACG
CGCATGATCCGTTTACGCCGACGCGATTTGGCCAGTCTGGCGGAGAGGGC
CTTCAGTCTCAAGCCCGCCGCCCCCGCCGCAAAGACTCCTATCCCCACGG
GCACCTCCTCGGTCCCAGCGTCCAATCCGTCGACCAGGCAGGAGACCTTG
ATGGTGGCGGGTGGGGCGGGCGGAAGCTTGCTTTCTTCTCCGCCCCCCGA
TTCCCCCTTCTTGGTGGGCACACGGCGGCCGAACTCGTCCACCCCAAGCG
CCTCGTCAAGTTTCAGAGGAAAGGCTCCGTCGAGGGGGGCCTCCCCAGCG
AAGAGAGGAGGAGGCTCCTCGAAGGCCTCTTTGAAGACAAATGGGTGCGA
GGAGGGTGACGAGGCTCCGGGGATCCACGAGTATGCCGCAGGCGTACCCG
GGCCCAGTGATTTGTGCGAGTCGACCAGTGGCGCAGTTGGCCTAGGTATA
CAAAAGGATAAACAAAGACGGTCATAG
back to top

protein sequence of rna4049

>rna4049-protein ID=rna4049-protein|Name=rna4049|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MDFLPAHLRVPLAVASYSVCSGTMLLFNKLAMHYVPVPSLVTVIQLLSAV
VIILSLQWVRVIPPDPLESSKVKPYLLYTIAFVLGVYCNMRALAHSNVET
VIIFRSCTPLAVALCDYVFLGRELPSQRSCLALLTIALGAYGYVQTDSQF
KMDGLAAYTWAILYFVTICFEMTYGKKITSGIRFNSMWGPTFYTNFLSVT
PMFLLGYLMGDFKDFSAAEGTRGSQGAELWKWTTAGVVMLVVSSLMGTLI
GYTSWSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGIMALVLC
LIGGSFYKQAPMRPTDRSLNSIEFFAMGTELEKDELAEVEREANAKITEL
DTVPLIVSTEGKKLAFFGHQADDRQAPAGAV
back to top

mRNA from alignment at CM002462.1:708993..710961+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4049 ID=rna4049|Name=rna4049|organism=Nannochloropsis gaditana|type=mRNA|length=1969bp|location=Sequence derived from alignment at CM002462.1:708993..710961+ (Nannochloropsis gaditana)
TGTCTCGATGATAGCATTGCTGAACGAAGAATACCAAAATAGCTCTTGTC
TTGTATGGTAAGGGCGAGCTCGTACAGTACATTCTCCTTGCTTTTTCCAA
TGCCATTACGTAACCTGTACACGACAGACCAACACAGGATCAAGAATCAA
AATAATCGAGCAGAAATAAATCCGCAATCATTTCGAGACCACGAAAAGAG
AACAAGAAAATGGATTTCTTACCGGCGCATCTGCGCGTCCCTTTGGCTGT
CGCGAGTTACTCAGTATGCTCTGGAACCATGCTTCTCTTCAACAAACTGG
CAATGCACTACGGTAAGTCAGCGTGTGGCGACTTTGAATTCGTGAACGAG
ATAAAGTGGAACGCCTAGATCAAGGCGTTTGTCAGCTTGAACTCATGAAA
TGAGACGCGGAATGAATCTTGTGGCGGCTGGTAATCATAGAAGAAGCCAC
TAGGTTGCCCCCCAATGCTTGAATGCGCGACCCATTGCTCCTCCGGATCA
AACACCTTACATGCTTATGTAAATGGAGAATCACTTGAGAAGTTTGATGC
GACCTCGTAACTAATCCTCCAGGATCTTCCCTCCACAGTCCCCGTTCCAA
GCCTAGTGACAGTGATTCAGCTCCTTTCCGCGGTGGTTATCATCCTCTCG
CTCCAATGGGTCCGTGTCATTCCTCCCGACCCTCTTGAGTCCAGTAAAGT
GAAACCATACCTACTGTACACTATAGCATTCGTTCTCGGTGTGTACTGCA
ATATGCGCGCCCTGGCCCATTCCAACGTCGAGACCGTCATCATTTTTCGG
TCATGCACGCCTTTGGCCGTGGCTCTTTGCGATTACGTTTTTCTTGGCCG
AGAGCTGCCCTCCCAACGCTCTTGTCTCGCGCTCTTGACGATTGCATTGG
GCGCATATGGCTATGTCCAGACTGATTCGCAGTTTAAGATGGATGGCCTT
GCAGCCTACACGTGGGCGATCCTCTATTTTGTGACGATTTGCTTCGAGAT
GACGTACGGGAAAAAGATCACAAGTGGCATAAGGTTCAACAGCATGTGGG
GTCCCACATTTTATACGAACTTTTTATCCGTCACTCCCATGTTCCTGTTG
GGCTATCTGATGGGCGACTTCAAAGACTTCTCCGCCGCggaagggacgag
gggcTCACAGGGCGCCGAGCTATGGAAGTGGACAACGGCGGGCGTAGTCA
TGCTGGTGGTGTCCTCCTTGATGGGCACATTGATCGGCTACACCAGCTGG
AGCTGCCGGTCGCTCGTCtcggccaccaccttcacgcTGGTCGGGGTGAT
CAACAAGTTCATCACCATCCTCCTGAACGTCTTCATTTGGGACAAGCACG
CCTCGCCTTTAGGGATCATGGCCTTGGTCCTCTGCTTGATCGGGGGCTCT
TTCTATAAGCAGGCGCCTATGAGGCCCACCGACCGATCGCTGAATTCCAT
CGAATTTTTTGCGATGGGGACGGAGCTCGAAAAAGACGAGTTGGCTGAGG
TTGAGCGAGAAGCGAATGCAAAGATCACTGAATTGGATACTGTTCCTCTC
ATCGTATCcacggaggggaaaaaacTGGCCTTTTTCGGGCATCAAGCAGA
TGATCGGCAGGCGCCCGCCGGGGCTGTCTAGCCAAAGAAAGAGACTTCTG
AGTGTAGTGGGTGATAACAATGGAATATGACTCCTGCCGTACAAGATGGC
TTGATGCAAGTTATCATCATGGCCACAAAACCGTCAGGAAGTGGGACAGG
GTTTGCAATATCAGCACAAAGGTTAGGACCCCGAATTTCGACAATCTTTG
ATAGCTTGACTGAATGTGTGGCAATCAAACTCTTATGAATGGTATTGAAG
AAATAATACCAAAAATTATGCCACTCGTTGAGGACGTCTCATGAGTACTG
TGTTTCGCGGTGTATTTTTCTGTAATTGCCAACCGTGGGCATGTCTATTT
ACAAGCCTCTCACGCATTT
back to top

Coding sequence (CDS) from alignment at CM002462.1:708993..710961+

>rna4049 ID=rna4049|Name=rna4049|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002462.1:708993..710961+ (Nannochloropsis gaditana)
ATGGATTTCTTACCGGCGCATCTGCGCGTCCCTTTGGCTGTCGCGAGTTA
CTCAGTATGCTCTGGAACCATGCTTCTCTTCAACAAACTGGCAATGCACT
ACGTCCCCGTTCCAAGCCTAGTGACAGTGATTCAGCTCCTTTCCGCGGTG
GTTATCATCCTCTCGCTCCAATGGGTCCGTGTCATTCCTCCCGACCCTCT
TGAGTCCAGTAAAGTGAAACCATACCTACTGTACACTATAGCATTCGTTC
TCGGTGTGTACTGCAATATGCGCGCCCTGGCCCATTCCAACGTCGAGACC
GTCATCATTTTTCGGTCATGCACGCCTTTGGCCGTGGCTCTTTGCGATTA
CGTTTTTCTTGGCCGAGAGCTGCCCTCCCAACGCTCTTGTCTCGCGCTCT
TGACGATTGCATTGGGCGCATATGGCTATGTCCAGACTGATTCGCAGTTT
AAGATGGATGGCCTTGCAGCCTACACGTGGGCGATCCTCTATTTTGTGAC
GATTTGCTTCGAGATGACGTACGGGAAAAAGATCACAAGTGGCATAAGGT
TCAACAGCATGTGGGGTCCCACATTTTATACGAACTTTTTATCCGTCACT
CCCATGTTCCTGTTGGGCTATCTGATGGGCGACTTCAAAGACTTCTCCGC
CGCggaagggacgaggggcTCACAGGGCGCCGAGCTATGGAAGTGGACAA
CGGCGGGCGTAGTCATGCTGGTGGTGTCCTCCTTGATGGGCACATTGATC
GGCTACACCAGCTGGAGCTGCCGGTCGCTCGTCtcggccaccaccttcac
gcTGGTCGGGGTGATCAACAAGTTCATCACCATCCTCCTGAACGTCTTCA
TTTGGGACAAGCACGCCTCGCCTTTAGGGATCATGGCCTTGGTCCTCTGC
TTGATCGGGGGCTCTTTCTATAAGCAGGCGCCTATGAGGCCCACCGACCG
ATCGCTGAATTCCATCGAATTTTTTGCGATGGGGACGGAGCTCGAAAAAG
ACGAGTTGGCTGAGGTTGAGCGAGAAGCGAATGCAAAGATCACTGAATTG
GATACTGTTCCTCTCATCGTATCcacggaggggaaaaaacTGGCCTTTTT
CGGGCATCAAGCAGATGATCGGCAGGCGCCCGCCGGGGCTGTCTAGATGG
ATTTCTTACCGGCGCATCTGCGCGTCCCTTTGGCTGTCGCGAGTTACTCA
GTATGCTCTGGAACCATGCTTCTCTTCAACAAACTGGCAATGCACTACGT
CCCCGTTCCAAGCCTAGTGACAGTGATTCAGCTCCTTTCCGCGGTGGTTA
TCATCCTCTCGCTCCAATGGGTCCGTGTCATTCCTCCCGACCCTCTTGAG
TCCAGTAAAGTGAAACCATACCTACTGTACACTATAGCATTCGTTCTCGG
TGTGTACTGCAATATGCGCGCCCTGGCCCATTCCAACGTCGAGACCGTCA
TCATTTTTCGGTCATGCACGCCTTTGGCCGTGGCTCTTTGCGATTACGTT
TTTCTTGGCCGAGAGCTGCCCTCCCAACGCTCTTGTCTCGCGCTCTTGAC
GATTGCATTGGGCGCATATGGCTATGTCCAGACTGATTCGCAGTTTAAGA
TGGATGGCCTTGCAGCCTACACGTGGGCGATCCTCTATTTTGTGACGATT
TGCTTCGAGATGACGTACGGGAAAAAGATCACAAGTGGCATAAGGTTCAA
CAGCATGTGGGGTCCCACATTTTATACGAACTTTTTATCCGTCACTCCCA
TGTTCCTGTTGGGCTATCTGATGGGCGACTTCAAAGACTTCTCCGCCGCg
gaagggacgaggggcTCACAGGGCGCCGAGCTATGGAAGTGGACAACGGC
GGGCGTAGTCATGCTGGTGGTGTCCTCCTTGATGGGCACATTGATCGGCT
ACACCAGCTGGAGCTGCCGGTCGCTCGTCtcggccaccaccttcacgcTG
GTCGGGGTGATCAACAAGTTCATCACCATCCTCCTGAACGTCTTCATTTG
GGACAAGCACGCCTCGCCTTTAGGGATCATGGCCTTGGTCCTCTGCTTGA
TCGGGGGCTCTTTCTATAAGCAGGCGCCTATGAGGCCCACCGACCGATCG
CTGAATTCCATCGAATTTTTTGCGATGGGGACGGAGCTCGAAAAAGACGA
GTTGGCTGAGGTTGAGCGAGAAGCGAATGCAAAGATCACTGAATTGGATA
CTGTTCCTCTCATCGTATCcacggaggggaaaaaacTGGCCTTTTTCGGG
CATCAAGCAGATGATCGGCAGGCGCCCGCCGGGGCTGTCTAG
back to top
Synonyms
Publications