rna4043, rna4043 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4043
Unique Name	rna4043
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1152
Alignment location	CM002462.1:688623..691510 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g71.8272.mrna
Orig protein id	gnl\|cribi\|Naga_100001g71.8272
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:688623..691510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g71	gene3889	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26761.1	cds4033	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4043	rna4043-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:688623..691510-
coding sequence from alignment at CM002462.1:688623..691510-

mRNA sequence

>rna4043 ID=rna4043|Name=rna4043|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp
CCGGAAGTGCTTCAACTCGGTTCCCACAGTCTTTTTATCTTCACAGTGGA
TCCCGAATAAGTGTCCTAAGGCCACAATAAGTATCAAGATATTTATCACC
TCTTTTTTCTTCATTATCTGCTAAAACAGACCTCGCCAGGGGGTCAAAGT
AGCTCGCAAATATCCTCCAGCGCCATGGGAGTATCCATATTACCTTTCAC
GTCAAAAGTTTCCTGTCTTGTGATTTTAGTCTTGCTCTTGTCTCTGGTAG
ATGGTTTCCTACTCCCTGTGCAAATATCATTTGACTTGCGCTCATCTGTA
CCAGAGCATAGGCGCCGGCCTGCGTATCGAGAGATAGGTCTCGCCGCGGT
CGACAGCCAGCCCCCATCAGCTCCCTCGCCGGCGCAAACACAAGCAGAAG
AAAGCGATGTGGACGAGATTATAGACGCTGCAATGGATCAGTCCATGCAT
ACAGTAGCTATGGATTGGGAAAACGTGGATCCTGCTCCTATCAAGCTACA
AACCTCGGCAGGTGATGAGAACTCGTCCCTGCGCCCTAATCCGTTCGCGG
CGTACGAGGAATTCATTGAACCTCCACCAACGCACGTTGTGTATTACCGC
GGCCATCATGAAAGGTCGTTTTGGCGACAAGGCCGAGATGTGGTACAGCT
CGTGGTGCCTGTGGATCCGGCCGTGACTAAAGCTGACATTGTTTTCGAGC
TTGCGACCAAAACCCACCTTCGCCTGAGGTTGGGAGACGAGCCTGACCTG
TTTGACCGAGAACTAGCGCAGCCAGTGCACAAGGATGGTTCTTTCTGGTA
TTTTGAAGAGCACCCTGAAACTGAGCAAAAGGCCGTAGTGATTGAGTTGG
ACAAGCGTTTGGAGTACTCGAATTGGCCGAAGCTCTTCGCGGCAGACGTG
GACCTAAGTGAAGTCCCCTCAAAAGCCAGCCCTGTTGGGGATAGTCCCAT
AAGCTTTTGATCAGAACCCAAAAAAAATGCTGACAGTTAAAAGTGTTTAA
TTTGTATTTGCGACCGTCCCCCTCACACACCCCATCCTCCTCCACTCCGT
CTGATGTCAAATGGCCCAACCCCAATTTGTCACACGGGCGACGCATCGCC
ACGAGCCTCATCTATCGAAAATGACGACTCCCGGACCTCTTTAAATCGCT
CT

protein sequence of rna4043

>rna4043-protein ID=rna4043-protein|Name=rna4043|organism=Nannochloropsis gaditana|type=polypeptide|length=841bp
MRKGWSKAPLLCTQWPPGTAKSSSAALLPSLLLRALSTTPASAYPPPSPP
SPAAVRPVGIENIGAPRPVGSKRKRRLVNRMPDGSSQQLGRWERVVPASS
RMIEYLKSSEMKGVSVDSTSKILHANASSTLTSALQLARFYLQRRDFKAA
QELLFALQDGHLGPPSARKIPSVLIRPLLKQLVEGQVEAQEAGLAVESAK
RMVRAGGDLSPTVLVGLLRACRGSRMELLAPLWAERQPEWAGNQSICLAL
LEALGAYAQEGTVPVSWSSLPHVDEVWRALCAHGPPPPSAYALRIMGLAA
SAKAAGTAGDVGKGQSEIPHTLRMAVRDFAAENEEPLQRGQVLRAAVETL
LQVGGKAEDVADVLEVLAPPAGGAVDGKLHAALLRFLPPSRLDALQVLWD
HACRSLGPAQNPPLGLRLAFCRHALHSPSRALVKQGLSLLRTPPVLSTPP
HPASPGRSSSQSDGQAAGDLDMGDVTAVLEALCGQSRVVEARALQDALQR
FLPSPLPAPLARALLKCAALEGRPGRAIACLHRLKGEDVRENEGGGRGED
VTEPSDYEAALLALRRVQRSSATVRERELVENPLGFLAWALDDAGTSTVE
RRAGGPVLTPQATLVALQILRRACETSAETGRAERREAFVQRAVALVSKL
AAAGQETDDTLCEEMVGVAVWGGSLHRAVEVVREMEKTRAAPASLARAQT
LLIISLARRGDVGAAEEWLVRMNTLTGHGPSEQVLDAFAEAYAGDRDLSS
GLSMLQSCFNQYGNRPSVAAFRHLFELCLAMDGQGDLFEAQRALTIAEQL
WPGGEGPGVGGGLVEDMKERFKEVRESSFSIDEARGDASPV

mRNA from alignment at CM002462.1:688623..691510-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4043 ID=rna4043|Name=rna4043|organism=Nannochloropsis gaditana|type=mRNA|length=2888bp|location=Sequence derived from alignment at CM002462.1:688623..691510- (Nannochloropsis gaditana)
CCTCGTTTCCCGCCTATCTACGCACCTTTTACGATCAACAGTTCTTTGAG
GAATATAATGAGGAAAGGGTGGTCAAAAGCGCCATTATTGTGTACGCAAT
GGCCTCCTGGAACCGCTAAATCCTCCTCAGCCGCCCTGCTCCCATCTCTC
CTACTGCGAGCCCTGTCTACGACACCTGCATCGGCCTATCCACCACCATC
CCCTCCTTCGCCCGCCGCAGTCCGTCCTGTAGGCATTGAGAACATCGGAG
CCCCTCGTCCTGTGGGCAGCAAAAGAAAGAGACGGCTCGTCAATCGCATG
CCCGATGGCAGCTCTCAGCAGCTTGGACGATGGGAAAGGGTTGTGCCTGC
CTCCTCGCGCATGATAGAGTACCTAAAGAGTTCGGAGATGAAGGGTGTCT
CAGTCGATTCAACATCCAAAATTCTGCATGCCAATGCCTCGTCGACTCTC
ACTTCCGCACTGCAACTTGCGCGCTTCTACCTCCAGCGCCGTGATTTCAA
AGCGGCTCAAGAGCTTCTCTTCGCCCTTCAGGATGGTCACCTGGGCCCTC
CTTCGGCCCGTAAAATACCATCAGTGCTTATACGCCCTCTTCTTAAACAA
CTTGTGGAGGGGCAAGTGGAGGCTCAGGAGGCGGGGTTGGCCGTGGAGTC
TGCGAAGCGCATGGTGCGGGCCGGGGGGGATCTCTCCCCCACCGTGCTCG
TCGGGCTGCTGAGAGCCTGCAGGGGTTCCCGGATGGAGTTGCTGGCGCCT
TTGTGGGCGGAACGACAGCCAGAATGGGCGGGAAACCAGTCTATCTGCCT
GGCGCTGCTGGAGGCGTTGGGTGCTTACGCTCAGGAAGGCACAGTGCCGG
TCTCGTGGAGCTCTCTTCCACATGTGGACGAGGTTTGGCGTGCTCTTTGC
GCTCATGGCCCTCCTCCCCCCTCAGCCTACGCCCTGCGAATCATGGGACT
GGCGGCATCGGCGAAAGCCGCGGGGACCGCGGGCGATGTGGGAAAAGGGC
AGTCTGAAATCCCGCACACCTTGCGGATGGCCGTCCGCGACTTTGCCGCC
GAGAATGAGGAGCCTCTCCAGCGGGGGCAGGTCTTAAGAGCGGCCGTGGA
GACTTTGTTGCAGGTGGGAGGGAAAGCGGAAGACGTGGCAGACGTCCTCG
AGGTCCTGGCCCCTCCCGCCGGTGGGGCAGTCGACGGGAAGCTTCACGCG
GCCCTCCTGCGATTCCTCCCGCCCTCCCGCCTGGACGCGCTCCAGGTTCT
CTGGGACCATGCCTGTCGAAGCCTGGGGCCCGCTCAGAACCCACCCTTGG
GTCTCCGGCTCGCCTTTTGCCGCCACGCACTCCATAGCCCCAGTCGGGCA
TTGGTCAAGCAGGGCTTGAGCTTGCTGCGGACCCCCCCGGTACTCTCGAC
TCCTCCCCACCCCGCCAGTCCGGGCCGGAGCAGCAGTCAGAGCGACGGAC
AGGCCGCGGGGGATCTCGATATGGGGGATGTCACCGCGGTCCTCGAGGCT
CTCTGCGGGCAGAGCCGCGTGGTAGAAGCGCGGGCGTTGCAGGACGCTCT
GCAGCGTTTCCTTCCCTCCCCTTTACCCGCGCCTTTGGCCCGTGCCCTGC
TGAAATGCGCGGCGTTGGAAGGGAGGCCTGGTCGGGCTATCGCCTGCTTG
CATCGCTTGAAAGGCGAAGATGTGCGAGAAAATGAGGGCGGGGGCAGGGG
CGAGGACGTGACCGAGCCGTCAGACTATGAGGCGGCCCTGCTGGCCCTGA
GGCGCGTGCAGCGCTCTTCTGCGACCGTGCGAGAGCGTGAGCTGGTCGAG
AATCCTTTGGGATTCCTCGCGTGGGCGCTCGACGACGCAGGCACGTCGAC
CGTAGAGCGACGCGCCGGGGGACCGGTCCTGACCCCCCAGGCGACGCTTG
TCGCCCTTCAGATTCTACGGCGCGCCTGTGAAACGAGCGCGGAGACAGGG
AGGGCGGAGCGCCGGGAGGCTTTTGTCCAGCGGGCGGTGGCGCTGGTCAG
TAAGCTGGCGGCGGCCGGGCAGGAGACGGACGACACCCTCTGTGAGGAGA
TGGTGGGGGTGGCGGTCTGGGGAGGGAGTTTGCACCGAGCTGTGGAGGTT
GTGCGGGAGATGGAGAAGACACGGGCGGCCCCCGCCTCCTTGGCACGCGC
CCAGACCCTCCTTATTATCAGTCTGGCCCGTCGAGGCGACGTGGGTGCGG
CCGAGGAGTGGCTGGTCCGGATGAACACGCTGACGGGGCACGGACCCAGT
GAGCAGGTGCTGGACGCCTTCGCGGAGGCGTATGCTGGTGACAGAGACCT
GTCCTCCGGCCTGTCCATGCTGCAATCTTGCTTCAATCAGTACGGGAACC
GGCCCTCTGTGGCGGCGTTCAGGCATCTCTTCGAGCTGTGCTTGGCGATG
GACGGGCAGGGAGACCTCTTTGAGGCGCAGCGGGCGTTGACGATTGCTGA
ACAGCTCTGGCCAGGGGGGGAGGGGCCCGGGGTAGGGGGGGGCTTAGTGG
AAGATATGAAAGAGCGATTTAAAGAGGTCCGGGAGTCGTCATTTTCGATA
GATGAGGCTCGTGGCGATGCGTCGCCCGTGTGACAAATTGGGGTTGGGCC
ATTTGACATCAGACGGAGTGGAGGAGGATGGGGTGTGTGAGGGGGACGGT
CGCAAATACAAATTAAACACTTTTAACTGTCAGCATTTTTTTTGGGTTCT
GATCAAAAGCTTATGGGACTATCCCCAACAGGGCTGGCTTTTGAGGGGAC
TTCACTTAGGTCCACGTCTGCCGCGAAGAGCTTCGGCCAATTCGAGTACT
CCAAACGCTTGTCCAACTCAATCACTACGGCCTTTTGCTCAGTTTCAGGG
TGCTCTTCAAAATACCAGAAAGAACCATCCTTGTGCAC

Coding sequence (CDS) from alignment at CM002462.1:688623..691510-

>rna4043 ID=rna4043|Name=rna4043|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at CM002462.1:688623..691510- (Nannochloropsis gaditana)
ATGAGGAAAGGGTGGTCAAAAGCGCCATTATTGTGTACGCAATGGCCTCC
TGGAACCGCTAAATCCTCCTCAGCCGCCCTGCTCCCATCTCTCCTACTGC
GAGCCCTGTCTACGACACCTGCATCGGCCTATCCACCACCATCCCCTCCT
TCGCCCGCCGCAGTCCGTCCTGTAGGCATTGAGAACATCGGAGCCCCTCG
TCCTGTGGGCAGCAAAAGAAAGAGACGGCTCGTCAATCGCATGCCCGATG
GCAGCTCTCAGCAGCTTGGACGATGGGAAAGGGTTGTGCCTGCCTCCTCG
CGCATGATAGAGTACCTAAAGAGTTCGGAGATGAAGGGTGTCTCAGTCGA
TTCAACATCCAAAATTCTGCATGCCAATGCCTCGTCGACTCTCACTTCCG
CACTGCAACTTGCGCGCTTCTACCTCCAGCGCCGTGATTTCAAAGCGGCT
CAAGAGCTTCTCTTCGCCCTTCAGGATGGTCACCTGGGCCCTCCTTCGGC
CCGTAAAATACCATCAGTGCTTATACGCCCTCTTCTTAAACAACTTGTGG
AGGGGCAAGTGGAGGCTCAGGAGGCGGGGTTGGCCGTGGAGTCTGCGAAG
CGCATGGTGCGGGCCGGGGGGGATCTCTCCCCCACCGTGCTCGTCGGGCT
GCTGAGAGCCTGCAGGGGTTCCCGGATGGAGTTGCTGGCGCCTTTGTGGG
CGGAACGACAGCCAGAATGGGCGGGAAACCAGTCTATCTGCCTGGCGCTG
CTGGAGGCGTTGGGTGCTTACGCTCAGGAAGGCACAGTGCCGGTCTCGTG
GAGCTCTCTTCCACATGTGGACGAGGTTTGGCGTGCTCTTTGCGCTCATG
GCCCTCCTCCCCCCTCAGCCTACGCCCTGCGAATCATGGGACTGGCGGCA
TCGGCGAAAGCCGCGGGGACCGCGGGCGATGTGGGAAAAGGGCAGTCTGA
AATCCCGCACACCTTGCGGATGGCCGTCCGCGACTTTGCCGCCGAGAATG
AGGAGCCTCTCCAGCGGGGGCAGGTCTTAAGAGCGGCCGTGGAGACTTTG
TTGCAGGTGGGAGGGAAAGCGGAAGACGTGGCAGACGTCCTCGAGGTCCT
GGCCCCTCCCGCCGGTGGGGCAGTCGACGGGAAGCTTCACGCGGCCCTCC
TGCGATTCCTCCCGCCCTCCCGCCTGGACGCGCTCCAGGTTCTCTGGGAC
CATGCCTGTCGAAGCCTGGGGCCCGCTCAGAACCCACCCTTGGGTCTCCG
GCTCGCCTTTTGCCGCCACGCACTCCATAGCCCCAGTCGGGCATTGGTCA
AGCAGGGCTTGAGCTTGCTGCGGACCCCCCCGGTACTCTCGACTCCTCCC
CACCCCGCCAGTCCGGGCCGGAGCAGCAGTCAGAGCGACGGACAGGCCGC
GGGGGATCTCGATATGGGGGATGTCACCGCGGTCCTCGAGGCTCTCTGCG
GGCAGAGCCGCGTGGTAGAAGCGCGGGCGTTGCAGGACGCTCTGCAGCGT
TTCCTTCCCTCCCCTTTACCCGCGCCTTTGGCCCGTGCCCTGCTGAAATG
CGCGGCGTTGGAAGGGAGGCCTGGTCGGGCTATCGCCTGCTTGCATCGCT
TGAAAGGCGAAGATGTGCGAGAAAATGAGGGCGGGGGCAGGGGCGAGGAC
GTGACCGAGCCGTCAGACTATGAGGCGGCCCTGCTGGCCCTGAGGCGCGT
GCAGCGCTCTTCTGCGACCGTGCGAGAGCGTGAGCTGGTCGAGAATCCTT
TGGGATTCCTCGCGTGGGCGCTCGACGACGCAGGCACGTCGACCGTAGAG
CGACGCGCCGGGGGACCGGTCCTGACCCCCCAGGCGACGCTTGTCGCCCT
TCAGATTCTACGGCGCGCCTGTGAAACGAGCGCGGAGACAGGGAGGGCGG
AGCGCCGGGAGGCTTTTGTCCAGCGGGCGGTGGCGCTGGTCAGTAAGCTG
GCGGCGGCCGGGCAGGAGACGGACGACACCCTCTGTGAGGAGATGGTGGG
GGTGGCGGTCTGGGGAGGGAGTTTGCACCGAGCTGTGGAGGTTGTGCGGG
AGATGGAGAAGACACGGGCGGCCCCCGCCTCCTTGGCACGCGCCCAGACC
CTCCTTATTATCAGTCTGGCCCGTCGAGGCGACGTGGGTGCGGCCGAGGA
GTGGCTGGTCCGGATGAACACGCTGACGGGGCACGGACCCAGTGAGCAGG
TGCTGGACGCCTTCGCGGAGGCGTATGCTGGTGACAGAGACCTGTCCTCC
GGCCTGTCCATGCTGCAATCTTGCTTCAATCAGTACGGGAACCGGCCCTC
TGTGGCGGCGTTCAGGCATCTCTTCGAGCTGTGCTTGGCGATGGACGGGC
AGGGAGACCTCTTTGAGGCGCAGCGGGCGTTGACGATTGCTGAACAGCTC
TGGCCAGGGGGGGAGGGGCCCGGGGTAGGGGGGGGCTTAGTGGAAGATAT
GAAAGAGCGATTTAAAGAGGTCCGGGAGTCGTCATTTTCGATAGATGAGG
CTCGTGGCGATGCGTCGCCCGTGTGA

Synonyms

Publications