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Properties
| Property Name | Value |
|---|
| Product | CS-like domain protein |
| Orig transcript id | gnl|cribi|Naga_100001g72.8136.mrna |
| Orig protein id | gnl|cribi|Naga_100001g72.8136 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:687849..689000 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4042 ID=rna4042|Name=rna4042|organism=Nannochloropsis gaditana|type=mRNA|length=2551bp
ATGAAGAAAAAAGAGGTGATAAATATCTTGATACTTATTGTGGCCTTAGG
ACACTTATTCGGGATCCACTGCGGTATCATTCATAATACTACGTTGCAGC
CGGCCTTCCAAATGCTTTTTCGCAAGGTCACGGCGTACCTAGATGCAGTG
ACGGAGGCTTCCAGGCAGGAAGATGGCACCGCCTTGACGCACCTTTTCTC
CTACGATTGCCTATCGCATGGTTTAGGGCATCAATTTGCTCGTATGGATG
TCCGTCAGGCCATTCGTAACAACGCTGCAGTAAAGCGTGTCGCGCATGTT
CCTGAGCTCCTGGAGCCCTTCTTGCGCGCTGCCGGATGTTTGGCGGATCA
AGAGGTGGAGAAAGCCTTCGAGCACCATCGATCAGCTTTCGTTCTGGCGG
GTGATTTATACAAAGACCTCCAGGAAGAGTGGCTCCTCAATCTAATGCGC
AAGCTCGCGCGCGGCCTACGCCTCTTGGCGCAGAAAGTGGACAAGGAGAA
GGTGCGATTCGATCCCATCATGAACGAGGCCGTCAAAGCCATCTCGGATA
AGTTTCGGCTCTTCGGCACGGTCACAGCCAGTGGGCGTCGACGGGTGGCT
CTGATGCTTGCGAACGAACAAATAATATGCTACCTGCAGCTGAACAATCC
TCGGCAGTGCAAACCTTTGACGGACTGGGCGGACGCCCGGCACAAGCTCA
CGGACGATGACTTCACGTCCGGCGAGTTTGCTCAAGCGGATGCTGTCACA
TACCATTTCCTTCGGGCGCGCCTTTTTTTGCTCGACACGAATTACATAGA
AGCCGAGCGCTTCCTGACCTATGCGTTCCGACACTGCCCCGCTGCCGCTC
ACCGCAACAAGCGCACCATCCTCTCCTACATGGTGCCGGTGAAGCTCAAC
CTTGGTTTGCTGCCACGGCGCGGCCTTCTCGAGCGCTTTCAGCTCAAAGA
GTTTGAGGCGCTGGTGGCTGCTTTGCGCGATGGGGATTTCCGTCTGTATC
AAGAGCAGCTTGACAAATATCAGGATGACTTTATTGCCCGCGGGGTTTAT
ATCATATTGGAGAAGCTCAAGCTTTTCGTATACCGGAATTTCTTCAAAAA
AATCTGGGTGCTCAAGGGAAAGGAGTCGCGCCTGTCCATCGAGCTCATCA
TGCGCCTGCACCAGGGTTTGGACCCGGCCTCGGACGTGGACATCGACGAG
ATCGAGTGTTTGCTGGCGAACCTGATCTACAAGGGAAGCATCCGCGGGTA
CATCGCGCACGAGAAACGCATTCTTGTCCTCTCCAAGGATAAGCCCTTCC
CCTCGCCGCAGAGCTGACGTGTTGTTCACCCGCTCGGGCAGGTGGACGGC
CCATGTAAAGTAAAACATTCTGAGCGGTGGATGGCCTGGGGCGGCATGCG
AGCGAGCACTTCGAGGCAATGGCTCCTTTCCGTTGTCTTTCCTTGCTTAA
AGGTTCTCGGTTGCTTGGCCTCAAAGCCTGGAGTCCAGCGATATCCTCAC
ATTCGACTTTCCTCCCAAAGCGCACCGATAATTTTTCAGGTCTTCTAAGT
CCACACCCCCCTTTCGTATTAATAACGCGCAAAGCCCCAAGGCAGAACTT
GAGCTGTCTTGACATAGTGCACAATAATCCCCCCCTCCAAGCTACTGTGT
ACCGAGTTTGCCGTCATACCTCCCACCAAGTTTGGAAACCAAAAAGTCGC
CGATACCTGCCTTCCTAGCCCTACCCACCTATACACTCCCCAATCACCCT
TGCAGCCCCTACGCCATACCCCCGTCGATCCTCTCTTTCGTCATCTCCAA
GGACCGTCGGGACTCCCGCCGGAAAAACTCGGCCACGTCCACCTCAGTCG
CGGCCACCGATTCCACATCCTTCCCCACGGCCCGTTCGAAGGCCTGTCTG
GCTGCCTCGAATGATCCTGCATGGAAGTGGCTGACCCCGAGAAAGAAGTT
GTTGCGCAAGGACCGAGGCTCCACCTCCCAGGCGCTCTCAAAGGCCTCCA
CCGCCTTCGGCACGTCCCGCAGGGGCCAGGGCGCGGCCAGAAGGAAAGCC
CCTCGAAAAATGAAGGGCACACCTGCGTCGTAAGTTGGGTGGCGGGAGAC
AATCTGGTCGACGAGGCGCATGAAGGTGAGGCCATCGCCCGTCACGGCCG
CCTTTAGGATGCCCTTGCTGGACGTCCTGTAAGTGTAGGCCTCGGTCATG
AGGACGTGTATTCGCGCGTTTTGAGGCTCTTGCGCGTGCAATTCTTTTAA
AATGTCATAAGCCTCAAATGCATAGGTCTTCCACAGCTTCCGGTTCTCTT
TGCTGTCGGAGACGCCGTCAATGAGGACCGCGTTGGCATTCGTCAATGAG
CGGAGCAATGAGACGCTGGCGTCGGCGAATTTGAACTTGAGAGACGCGCT
TATCGTGGTGAGGGTCCCGATTCAAAGGAAAAAAATGGTACGTTAGATTA
GGTATAGCATTCGAAAAGACGCATTAGTGCAGGGGTGTTAGATTCTCATG
TCGTGCAACAAAGCTTGAAGAGGGCCCAAGCCCTCGAGCCGCACAACTTC
T back to topprotein sequence of rna4042 >rna4042-protein ID=rna4042-protein|Name=rna4042|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MGVSILPFTSKVSCLVILVLLLSLVDGFLLPVQISFDLRSSVPEHRRRPA
YREIGLAAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWEN
VDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFW
RQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQP
VHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSK
ASPVGDSPISF back to topmRNA from alignment at CM002462.1:687849..689000+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4042 ID=rna4042|Name=rna4042|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp|location=Sequence derived from alignment at CM002462.1:687849..689000+ (Nannochloropsis gaditana)
CCGGAAGTGCTTCAACTCGGTTCCCACAGTCTTTTTATCTTCACAGTGGA
TCCCGAATAAGTGTCCTAAGGCCACAATAAGTATCAAGATATTTATcacc
tcttttttcttcattaTCTGCTAAAACAGACCTCGCCAGGGGGTCAAAGT
AGCTCGCAAATATCCTCCAGCGCCATGGGAGTATCCATATTACCTTTCAC
GTCAAAAGTTTCCTGTCTTGTGATTTTAGTCTTGCTCTTGTCTCTGGTAG
ATGGTTTCCTACTCCCTGTGCAAATATCATTTGACTTGCGCTCATCTGTA
CCAGAGCATAGGCGCCGGCCTGCGTATCGAGAGATAGGTCTCGCCGCGGT
CGACAGCCAGCCCCCATCAGCTCCCTCGCCGGCGCAAACACAAGCAGAAG
AAAGCGATGTGGACGAGATTATAGACGCTGCAATGGATCAGTCCATGCAT
ACAGTAGCTATGGATTGGGAAAACGTGGATCCTGCTCCTATCAAGCTACA
AACCTCGGCAGGTGATGAGAACTCGTCCCTGCGCCCTAATCCGTTCGCGG
CGTACGAGGAATTCATTGAACCTCCACCAACGCACGTTGTGTATTACCGC
GGCCATCATGAAAGGTCGTTTTGGCGACAAGGCCGAGATGTGGTACAGCT
CGTGGTGCCTGTGGATCCGGCCGTGACTAAAGCTGACATTGTTTTCGAGC
TTGCGACCAAAACCCACCTTCGCCTGAGGTTGGGAGACGAGCCTGACCTG
TTTGACCGAGAACTAGCGCAGCCAGTGCACAAGGATGGTTCTTTCTGGTA
TTTTGAAGAGCACCCTGAAACTGAGCAAAAGGCCGTAGTGATTGAGTTGG
ACAAGCGTTTGGAGTACTCGAATTGGCCGAAGCTCTTCGCGGCAGACGTG
GACCTAAGTGAAGTCCCCTCAAAAGCCAGCCCTGTTGGGGATAGTCCCAT
AAGCTTTTGATCAGAACCCAAAAAAAATGCTGACAGTTAAAAGTGTTTAA
TTTGTATTTGCGACCGTCCCCCTCACacaccccatcctcctccactccgt
CTGATGTCAAATGGCCCAACCCCAATTTGTCACACGGGCGACGCATCGCC
ACGAGCCTCATCTATCGAAAATGACGACTCCCGGACCTCTTTAAATCGCT
CT back to topCoding sequence (CDS) from alignment at CM002462.1:687849..689000+ >rna4042 ID=rna4042|Name=rna4042|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002462.1:687849..689000+ (Nannochloropsis gaditana)
ATGGGAGTATCCATATTACCTTTCACGTCAAAAGTTTCCTGTCTTGTGAT
TTTAGTCTTGCTCTTGTCTCTGGTAGATGGTTTCCTACTCCCTGTGCAAA
TATCATTTGACTTGCGCTCATCTGTACCAGAGCATAGGCGCCGGCCTGCG
TATCGAGAGATAGGTCTCGCCGCGGTCGACAGCCAGCCCCCATCAGCTCC
CTCGCCGGCGCAAACACAAGCAGAAGAAAGCGATGTGGACGAGATTATAG
ACGCTGCAATGGATCAGTCCATGCATACAGTAGCTATGGATTGGGAAAAC
GTGGATCCTGCTCCTATCAAGCTACAAACCTCGGCAGGTGATGAGAACTC
GTCCCTGCGCCCTAATCCGTTCGCGGCGTACGAGGAATTCATTGAACCTC
CACCAACGCACGTTGTGTATTACCGCGGCCATCATGAAAGGTCGTTTTGG
CGACAAGGCCGAGATGTGGTACAGCTCGTGGTGCCTGTGGATCCGGCCGT
GACTAAAGCTGACATTGTTTTCGAGCTTGCGACCAAAACCCACCTTCGCC
TGAGGTTGGGAGACGAGCCTGACCTGTTTGACCGAGAACTAGCGCAGCCA
GTGCACAAGGATGGTTCTTTCTGGTATTTTGAAGAGCACCCTGAAACTGA
GCAAAAGGCCGTAGTGATTGAGTTGGACAAGCGTTTGGAGTACTCGAATT
GGCCGAAGCTCTTCGCGGCAGACGTGGACCTAAGTGAAGTCCCCTCAAAA
GCCAGCCCTGTTGGGGATAGTCCCATAAGCTTTTGA back to top
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