EWM26625.1, cds4032 (CDS) Nannochloropsis gaditana

Overview
NameEWM26625.1
Unique Namecds4032
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:688023..688808 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26625.1
ProductCS-like domain protein
Orig transcript idgnl|cribi|Naga_100001g72.8136.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:688023..688808 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
[Close]
BLAST of EWM26625.1 vs. NCBI_GenBank
Match: gi|585108713|gb|EWM26625.1| (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 
Query:    1 MGVSILPFTSKVSCLVILVLLLSLVDGFLLPVQISFDLRSSVPEHRRRPAYREIGLAAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF 261
            MGVSILPFTSKVSCLVILVLLLSLVDGFLLPVQISFDLRSSVPEHRRRPAYREIGLAAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF
Sbjct:    1 MGVSILPFTSKVSCLVILVLLLSLVDGFLLPVQISFDLRSSVPEHRRRPAYREIGLAAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF 261
[Close]
BLAST of EWM26625.1 vs. NCBI_GenBank
Match: gi|553186576|ref|XP_005854444.1| (hypothetical protein NGA_0014902 [Nannochloropsis gaditana CCMP526] >gi|422294610|gb|EKU21910.1| hypothetical protein NGA_0014902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.844 bits (930), Expect = 1.461e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 
Query:   87 MDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF 261
            MDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF
Sbjct:    1 MDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEVPSKASPVGDSPISF 175
The following BLAST results are available for this feature:
BLAST of EWM26625.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108713|gb|EWM26625.1|0.000e+0100.00CS-like domain protein [Nannochloropsis gaditana][more]
gi|553186576|ref|XP_005854444.1|1.461e-125100.00hypothetical protein NGA_0014902 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4042rna4042Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications