rna4039, rna4039 (mRNA) Nannochloropsis gaditana

Overview
Namerna4039
Unique Namerna4039
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002462.1:683405..683994 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g76.8198.mrna
Orig protein idgnl|cribi|Naga_100001g76.8198
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:683405..683994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g76gene3885Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4039rna4039-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26687.1cds4029Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4039 ID=rna4039|Name=rna4039|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGACAGAGGAGCAGAAGGTGGAGCGTCGCGAGCGCAATCGAGAGCATGC
AAAGCGCTCCCGTGTCCGCAAGAAGTTCTTGCTAGAGTCACTGCAAAAAA
GCGTGAACGCCCTCCAGGAGGAGAACGACAAGCTTCGGGGAGCGATCCGG
AGCCACCTGAAGGAGGGCGCGGATGACTTGCTCAAGACTTGCGAGGTGGA
GGTGGATGAGTCCATTCTGGCCTCGGACCCTTGCTCGGCCACGAAGATCC
TGGACGACCCGGACTACACGCTCGTCAAGGCGCTACAAACGGCGCAGCAG
AACTTCGTCATCACCGACCCGACGCTGCCTGATAACCCCATCGTGTACGC
CTCGGGCGGGTTCCTGAGTCTGACGGGCTACCAGATGGACCAGATCCTGG
GCCGGAACTGCCGCTTCCTGCAGGGGCCGGACACCGACCCGGCGGCGGTG
GACAAGATCCGCCGCGCCATCGAGGATGGAACGGACGGGAGTGTCTGCCT
TCTGAACTACCGGGCGGATGGCTCCACCTTCTGGAACCAGTTTTTCATCG
CGGCGCTTCGGGGAGCGGACGGGAACATCGTGAACTACGTGGGGGTCCAG
TGCAAAGTGAGCGAGGAATACGCCTCGGAGGTGTTGAAGAAGGAGGCAAC
ATCCTCGACGGTGGCGGAAGCCTCCTCCAAGCGCTGA
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protein sequence of rna4039

>rna4039-protein ID=rna4039-protein|Name=rna4039|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MHFIEGRALPPQVEPKEGCFLPFPLRNGPMEARVASCLAHDTIHLHGGTC
RPSVLLCVSSKIGWVSATEFLFGILAVVRIPVPQIRASYSFPFPISFLKL
HQSGQPNIRAAKLSLFLRPLNSEPSLPISIKCCARRDATLTGFSCVSDRN
YPRVSTSCLSPTGT
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mRNA from alignment at CM002462.1:683405..683994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4039 ID=rna4039|Name=rna4039|organism=Nannochloropsis gaditana|type=mRNA|length=590bp|location=Sequence derived from alignment at CM002462.1:683405..683994- (Nannochloropsis gaditana)
ATGCATTTCATAGAGGGTAGGGCGCTCCCCCCCCAGGTGGAGCCGAAAGA
GGGATGCTTTTTGCCCTTTCCACTACGGAACGGTCCCATGGAAGCACGAG
TTGCTTCATGCCTTGCGCATGACACAATACATTTGCATGGTGGAACGTGT
CGCCCCTCGGTATTGCTGTGTGTGTCGTCTAAGATTGGATGGGTTTCAGC
AACAGAATTCCTTTTTGGCATCTTGGCTGTAGTGCGCATTCCTGTACCGC
AAATTCGGGCTTCATACTCCTTCCCCTTTCCCATTAGTTTCTTAAAGCTC
CATCAAAGCGGGCAACCTAATATTCGCGTAGAAGTGTCCCACTTCGTTGC
CACGAAGTCCTGCAACATAGATACCTCCAGAGTTCTAATCCTTCCACTTC
GACACACACACTCACGGTTTAGGCGGCCAAGCTTTCGTTGTTTCTTCGCC
CTTTAAATTCTGAGCCTTCCTTACCCATCAGCATTAAGTGCTGTGCGAGG
AGGGACGCCACCTTGACTGGCTTTTCGTGCGTAAGTGATAGAAATTATCC
CAGAGTGAGCACTTCTTGCCTGTCCCCTACAGGCACGTGA
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Coding sequence (CDS) from alignment at CM002462.1:683405..683994-

>rna4039 ID=rna4039|Name=rna4039|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002462.1:683405..683994- (Nannochloropsis gaditana)
GCGGCCAAGCTTTCGTTGTTTCTTCGCCCTTTAAATTCTGAGCCTTCCTT
ACCCATCAGCATTAAGTGCTGTGCGAGGAGGGACGCCACCTTGACTGGCT
TTTCGTGCGTAAGTGATAGAAATTATCCCAGAGTGAGCACTTCTTGCCTG
TCCCCTACAGGCACGTGAATGCATTTCATAGAGGGTAGGGCGCTCCCCCC
CCAGGTGGAGCCGAAAGAGGGATGCTTTTTGCCCTTTCCACTACGGAACG
GTCCCATGGAAGCACGAGTTGCTTCATGCCTTGCGCATGACACAATACAT
TTGCATGGTGGAACGTGTCGCCCCTCGGTATTGCTGTGTGTGTCGTCTAA
GATTGGATGGGTTTCAGCAACAGAATTCCTTTTTGGCATCTTGGCTGTAG
TGCGCATTCCTGTACCGCAAATTCGGGCTTCATACTCCTTCCCCTTTCCC
ATTAGTTTCTTAAAGCTCCATCAAAGCGGGCAACCTAATATTCGCGCGGC
CAAGCTTTCGTTGTTTCTTCGCCCTTTAAATTCTGAGCCTTCCTTACCCA
TCAGCATTAAGTGCTGTGCGAGGAGGGACGCCACCTTGACTGGCTTTTCG
TGCGTAAGTGATAGAAATTATCCCAGAGTGAGCACTTCTTGCCTGTCCCC
TACAGGCACGTGAATGCATTTCATAGAGGGTAGGGCGCTCCCCCCCCAGG
TGGAGCCGAAAGAGGGATGCTTTTTGCCCTTTCCACTACGGAACGGTCCC
ATGGAAGCACGAGTTGCTTCATGCCTTGCGCATGACACAATACATTTGCA
TGGTGGAACGTGTCGCCCCTCGGTATTGCTGTGTGTGTCGTCTAAGATTG
GATGGGTTTCAGCAACAGAATTCCTTTTTGGCATCTTGGCTGTAGTGCGC
ATTCCTGTACCGCAAATTCGGGCTTCATACTCCTTCCCCTTTCCCATTAG
TTTCTTAAAGCTCCATCAAAGCGGGCAACCTAATATTCGC
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Synonyms
Publications