EWM26687.1, cds4029 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26687.1
Unique Name	cds4029
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:683668..683994 -
Alignment location	CM002462.1:683405..683572 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26687.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g76.8198.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:683668..683994 -
CM002462.1	supercontig	CM002462.1:683405..683572 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26687.1 vs. NCBI_GenBank
Match: gi|585108775|gb|EWM26687.1| (hypothetical protein Naga_100001g76 [Nannochloropsis gaditana])

HSP 1 Score: 332.798 bits (852), Expect = 1.731e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query:    1 MHFIEGRALPPQVEPKEGCFLPFPLRNGPMEARVASCLAHDTIHLHGGTCRPSVLLCVSSKIGWVSATEFLFGILAVVRIPVPQIRASYSFPFPISFLKLHQSGQPNIRAAKLSLFLRPLNSEPSLPISIKCCARRDATLTGFSCVSDRNYPRVSTSCLSPTGT 164
            MHFIEGRALPPQVEPKEGCFLPFPLRNGPMEARVASCLAHDTIHLHGGTCRPSVLLCVSSKIGWVSATEFLFGILAVVRIPVPQIRASYSFPFPISFLKLHQSGQPNIRAAKLSLFLRPLNSEPSLPISIKCCARRDATLTGFSCVSDRNYPRVSTSCLSPTGT
Sbjct:    1 MHFIEGRALPPQVEPKEGCFLPFPLRNGPMEARVASCLAHDTIHLHGGTCRPSVLLCVSSKIGWVSATEFLFGILAVVRIPVPQIRASYSFPFPISFLKLHQSGQPNIRAAKLSLFLRPLNSEPSLPISIKCCARRDATLTGFSCVSDRNYPRVSTSCLSPTGT 164

The following BLAST results are available for this feature:

BLAST of EWM26687.1 vs. NCBI_GenBank

BLAST of EWM26687.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108775\|gb\|EWM26687.1\|	1.731e-115	100.00	hypothetical protein Naga_100001g76 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4039	rna4039	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications