rna4038, rna4038 (mRNA) Nannochloropsis gaditana

Overview
Namerna4038
Unique Namerna4038
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length267
Alignment locationCM002462.1:682111..682797 -

Link to JBrowse

Properties
Property NameValue
Productaureochrome1-like protein
Orig transcript idgnl|cribi|Naga_100001g77.8279.mrna
Orig protein idgnl|cribi|Naga_100001g77.8279
GeneAUR3
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:682111..682797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
AUR3gene3884Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26768.1cds4028Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4038rna4038-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4038 ID=rna4038|Name=rna4038|organism=Nannochloropsis gaditana|type=mRNA|length=267bp
ATGGAATGGAGAAGGGGAAGCAAAAGCAAGGGCCGTTGTTTATATAGTGG
GTCAGCCGAAAATAGCGTGGAGCGGACGGTAGTACATTTCCTGCAAGGTG
AAGCAAGAATCGCTTTGGCCGCAAGGTGGAGGACGAAGAATCGGGAAGGG
GCTTCCAGGGCTGTGAAAGTGTGTGTGGAACCGGGTCCGAGAGAGTCTCT
GAGTGTTGTGAAAGGAAGTTTTTTTTTACACGTAAGGGCAGACGAAGACG
AGACATCACACACATGA
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protein sequence of rna4038

>rna4038-protein ID=rna4038-protein|Name=rna4038|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIR
SHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQ
NFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAV
DKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQ
CKVSEEYASEVLKKEATSSTVAEASSKR
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mRNA from alignment at CM002462.1:682111..682797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4038 ID=rna4038|Name=rna4038|organism=Nannochloropsis gaditana|type=mRNA|length=687bp|location=Sequence derived from alignment at CM002462.1:682111..682797- (Nannochloropsis gaditana)
ATGACAGAGGAGCAGAAGGTGGAGCGTCGCGAGCGCAATCGAGAGCATGC
AAAGCGCTCCCGTGTCCGCAAGAAGTTCTTGCTAGAGTCACTGCAAAAAA
GCGTGAACGCCCTCCAGGAGGAGAACGACAAGCTTCGGGGAGCGATCCGG
AGCCACCTGAAGGAGGGCGCGGATGACTTGCTCAAGACTTGCGAGGTGGA
GGTGGATGAGTCCATTCTGGCCTCGGACCCTTGCTCGGCCACGAAGATCC
TGGACGACCCGGACTACACGCTCGTCAAGGCGCTACAAACGGCGCAGCAG
AACTTCGTCATCACCGACCCGACGCTGCCTGATAACCCCATCGTGTACGC
CTCGGGCGGGTTCCTGAGTCTGACGGGCTACCAGATGGACCAGATCCTGG
GCCGGAACTGCCGCTTCCTGCAGGGGCCGGACACCGACCCGGCGGCGGTG
GACAAGATCCGCCGCGCCATCGAGGATGGAACGGACGGGAGTGTCTGCCT
TCTGAACTACCGGGCGGATGGCTCCACCTTCTGGAACCAGTTTTTCATCG
CGGCGCTTCGGGGAGCGGACGGGAACATCGTGAACTACGTGGGGGTCCAG
TGCAAAGTGAGCGAGGAATACGCCTCGGAGGTGTTGAAGAAGGAGGCAAC
ATCCTCGACGGTGGCGGAAGCCTCCTCCAAGCGCTGA
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Coding sequence (CDS) from alignment at CM002462.1:682111..682797-

>rna4038 ID=rna4038|Name=rna4038|organism=Nannochloropsis gaditana|type=CDS|length=687bp|location=Sequence derived from alignment at CM002462.1:682111..682797- (Nannochloropsis gaditana)
ATGACAGAGGAGCAGAAGGTGGAGCGTCGCGAGCGCAATCGAGAGCATGC
AAAGCGCTCCCGTGTCCGCAAGAAGTTCTTGCTAGAGTCACTGCAAAAAA
GCGTGAACGCCCTCCAGGAGGAGAACGACAAGCTTCGGGGAGCGATCCGG
AGCCACCTGAAGGAGGGCGCGGATGACTTGCTCAAGACTTGCGAGGTGGA
GGTGGATGAGTCCATTCTGGCCTCGGACCCTTGCTCGGCCACGAAGATCC
TGGACGACCCGGACTACACGCTCGTCAAGGCGCTACAAACGGCGCAGCAG
AACTTCGTCATCACCGACCCGACGCTGCCTGATAACCCCATCGTGTACGC
CTCGGGCGGGTTCCTGAGTCTGACGGGCTACCAGATGGACCAGATCCTGG
GCCGGAACTGCCGCTTCCTGCAGGGGCCGGACACCGACCCGGCGGCGGTG
GACAAGATCCGCCGCGCCATCGAGGATGGAACGGACGGGAGTGTCTGCCT
TCTGAACTACCGGGCGGATGGCTCCACCTTCTGGAACCAGTTTTTCATCG
CGGCGCTTCGGGGAGCGGACGGGAACATCGTGAACTACGTGGGGGTCCAG
TGCAAAGTGAGCGAGGAATACGCCTCGGAGGTGTTGAAGAAGGAGGCAAC
ATCCTCGACGGTGGCGGAAGCCTCCTCCAAGCGCTGA
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Synonyms
Publications