EWM26768.1, cds4028 (CDS) Nannochloropsis gaditana

Overview
NameEWM26768.1
Unique Namecds4028
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:682111..682797 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26768.1
Productaureochrome1-like protein
Orig transcript idgnl|cribi|Naga_100001g77.8279.mrna
GeneAUR3
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:682111..682797 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0000160phosphorelay signal transduction system
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0003677DNA binding
GO:0000155phosphorelay sensor kinase activity
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR000700PAS-assoc_C
IPR000014PAS
IPR004827bZIP
IPR001610PAC
Homology
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|553186579|ref|XP_005854445.1| (hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526] >gi|422294611|gb|EKU21911.1| hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526] >gi|585108856|gb|EWM26768.1| aureochrome1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 471.855 bits (1213), Expect = 1.956e-168
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEATSSTVAEASSKR 228
            MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEATSSTVAEASSKR
Sbjct:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEATSSTVAEASSKR 228          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001018704|gb|AML79519.1| (putative LOV domain-containing protein [Sargassum thunbergii])

HSP 1 Score: 330.102 bits (845), Expect = 3.996e-112
Identity = 156/215 (72.56%), Postives = 182/215 (84.65%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  E A +LL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV E++   V K+
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETS---SLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQKR 212          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001014769|gb|AML77738.1| (putative LOV domain-containing protein [Sargassum fusiforme])

HSP 1 Score: 329.331 bits (843), Expect = 7.708e-112
Identity = 156/215 (72.56%), Postives = 182/215 (84.65%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  E A +LL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV E++   V K+
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETS---SLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQKR 212          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001013747|gb|AML77281.1| (putative LOV domain-containing protein [Sargassum vachellianum])

HSP 1 Score: 329.331 bits (843), Expect = 1.887e-111
Identity = 156/215 (72.56%), Postives = 182/215 (84.65%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  E A +LL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV E++   V K+
Sbjct:   26 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETS---SLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQKR 237          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001012035|gb|AML76511.1| (putative LOV domain-containing protein [Mallomonas sp. BC-2016])

HSP 1 Score: 332.028 bits (850), Expect = 2.255e-111
Identity = 155/217 (71.43%), Postives = 180/217 (82.95%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEAT 217
            MTEEQKVERRERNREHAKRSRVRKKFLLESLQ+SV ALQ+EN+KLRGAIR HL   A++LL TC      SI+A  P  AT+ LDDPDY+LVKALQTAQQNFVITDP++PDNPIV+AS GFL+LTGY +DQ+LGRNCRFLQGP TDP +V +IR  IE G D +  LLNYR+D +TFWNQFF+AALR  DGNIVNY+GVQCKVS++YA   +K E +
Sbjct:  121 MTEEQKVERRERNREHAKRSRVRKKFLLESLQQSVQALQDENEKLRGAIREHLPTEAEELLSTCSQTGPGSIIADRPDEATRTLDDPDYSLVKALQTAQQNFVITDPSMPDNPIVFASQGFLNLTGYTLDQVLGRNCRFLQGPGTDPRSVSRIRAGIEKGEDTTTVLLNYRSDQTTFWNQFFVAALRDGDGNIVNYLGVQCKVSDDYAVAFIKHEQS 337          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001013285|gb|AML77072.1| (putative LOV domain-containing protein [Sargassum integerrimum])

HSP 1 Score: 327.791 bits (839), Expect = 3.710e-111
Identity = 155/215 (72.09%), Postives = 182/215 (84.65%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  E A +LL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV +++   V K+
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETS---SLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDDDFVRAVQKR 212          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001016533|gb|AML78526.1| (putative LOV domain-containing protein [Sargassum horneri])

HSP 1 Score: 326.635 bits (836), Expect = 9.883e-111
Identity = 155/215 (72.09%), Postives = 181/215 (84.19%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  E A +LL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV E++     K+
Sbjct:    1 MTEKQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETS---SLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDASVCLRNYRVDGAMFWNQFFIAALRDSEGIVINYVGVQCKVDEDFVRAAQKR 212          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|299473575|emb|CBN77970.1| (aureochrome 3 [Ectocarpus siliculosus])

HSP 1 Score: 327.791 bits (839), Expect = 1.059e-110
Identity = 155/212 (73.11%), Postives = 181/212 (85.38%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEV 211
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV +LQEEN+KLRGAIRS+L  E A +LL   E E   ++++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQCKV E++   V
Sbjct:   36 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEAKELL--AETETPTTLISSRPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAV 245          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001012515|gb|AML76725.1| (putative LOV domain-containing protein [Synura petersenii])

HSP 1 Score: 328.946 bits (842), Expect = 1.483e-110
Identity = 160/215 (74.42%), Postives = 178/215 (82.79%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKE 215
            M+EEQKVERRERNREHAKRSRVRKKFLLESLQ+SV ALQEEN+KLR AIR HL   AD LL +C  +   S+LAS+   AT  LDDPDY+LVKALQTAQQNFVITDPTLPDNPIVYAS GFL+LTGY + Q+LGRNCRFLQGPDT P AV +IR  IE G D +  +LNYRAD +TFWNQFFIAALR  DGNIVNY+GVQCKVS+EYA   +KKE
Sbjct:   92 MSEEQKVERRERNREHAKRSRVRKKFLLESLQQSVQALQEENEKLRCAIREHLPRDADFLLASCN-QGGMSVLASENDVATSTLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVYASQGFLNLTGYSLPQVLGRNCRFLQGPDTHPRAVARIRHGIEKGEDTTTVILNYRADQTTFWNQFFIAALRDGDGNIVNYLGVQCKVSDEYAKAFIKKE 305          
BLAST of EWM26768.1 vs. NCBI_GenBank
Match: gi|1001014843|gb|AML77774.1| (putative LOV domain-containing protein [Dictyopteris undulata])

HSP 1 Score: 328.176 bits (840), Expect = 1.504e-110
Identity = 157/215 (73.02%), Postives = 182/215 (84.65%), Query Frame = 0
Query:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLK-EGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKK 214
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIRS+L  E A +LL+  E     +++AS+P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+AIE G D SVCL NYR DG  FWNQFFIAALR ++G ++NYVGVQCKV E++     KK
Sbjct:   56 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLSAEEAKELLEQTETS---NLIASNPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGVMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRASQKK 267          
The following BLAST results are available for this feature:
BLAST of EWM26768.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553186579|ref|XP_005854445.1|1.956e-168100.00hypothetical protein NGA_0015702 [Nannochloropsis ... [more]
gi|1001018704|gb|AML79519.1|3.996e-11272.56putative LOV domain-containing protein [Sargassum ... [more]
gi|1001014769|gb|AML77738.1|7.708e-11272.56putative LOV domain-containing protein [Sargassum ... [more]
gi|1001013747|gb|AML77281.1|1.887e-11172.56putative LOV domain-containing protein [Sargassum ... [more]
gi|1001012035|gb|AML76511.1|2.255e-11171.43putative LOV domain-containing protein [Mallomonas... [more]
gi|1001013285|gb|AML77072.1|3.710e-11172.09putative LOV domain-containing protein [Sargassum ... [more]
gi|1001016533|gb|AML78526.1|9.883e-11172.09putative LOV domain-containing protein [Sargassum ... [more]
gi|299473575|emb|CBN77970.1|1.059e-11073.11aureochrome 3 [Ectocarpus siliculosus][more]
gi|1001012515|gb|AML76725.1|1.483e-11074.42putative LOV domain-containing protein [Synura pet... [more]
gi|1001014843|gb|AML77774.1|1.504e-11073.02putative LOV domain-containing protein [Dictyopter... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4038rna4038Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications