rna4036, rna4036 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4036
Unique Name	rna4036
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2889
Alignment location	CM002462.1:678582..681612 +

Link to JBrowse

Properties


Property Name	Value
Product	violaxanthin de-epoxidase-related protein
Orig transcript id	gnl\|cribi\|Naga_100001g81.8096.mrna
Orig protein id	gnl\|cribi\|Naga_100001g81.8096
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:678582..681612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g81	gene3882	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4036	rna4036-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26585.1	cds4026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:678582..681612+
coding sequence from alignment at CM002462.1:678582..681612+

mRNA sequence

>rna4036 ID=rna4036|Name=rna4036|organism=Nannochloropsis gaditana|type=mRNA|length=2889bp
ATGTCTCTATCAACTCCAATACCCCCGGATTTCGAAGGGGAGCCTCCGCC
ACTCTACACGGACGGGATGTTTGAAGAGGGCGTGGAAGGTGTTGAAGAGC
AACATGTTAATGTATCGTACATGAAGGGAGAGGGAGAGGAGATCGAAGGA
GTACATACTGCGGACATGGAAAGGAAAGGGGGCCAGCTCCAAGGCAGAGC
GGCTGCACAATCTGAAGAAGCGGCAGTTTTCATGGGGGGTGCTTGCCCTG
AGAATAACATGGGCATGCGTATAAGCACTAGCTTAAACAGCATTGAGACC
GACGTGACCAACGCAGGGAGGCAAGAGGTACTGAGCCCGCGCAACCGCAC
GACTCCTCGGCGTTCCTGCGGAGGGCCCAAGGTATGGATGGAAGAGAAAG
TGTTTGGGGAGGATCCACACGGAGGGAAACGTCCTTGCTCAACGTGTCGG
AAATCCAAGGTTCGCTGCGACCGCGGCTTCCCCTGCACGCGCTGTGTACG
CCTGGGCCTGGACTGCCGCGAGCAAGCTAGGGTACGGCGCGGAGGCCTAT
CGCGCTCCCACGGAGGCAGGCCCCACAGCGCCAACTCCAGCGTCACCAGC
GGCGGAAGCGTGCACAGAGAGTCGTCGGCATGCTCAATGGATAGCTTAAA
CCAGGCGGGGAAGGAGGTGATTATGCCCCCCTCCGTTTCGTCAAGCTCAC
CGTCCAGCCAAGGCCAGCGGCGGCGTGCAGACGCGTTTGGGAAACGCGGC
GGCGGCCGAGGGCGGGGGCGGAGCCGAGGAATTGTCCGACCCCTGCACGT
GAATAACATGGCTTCCCATCCTGTGGCTGGCCATACCGTGCACCCTGGCC
TTTCCGAGCCGCAGGCGGGGCAGGGAACGCGGGCGCCCTTCCCGAGCTCG
CACCTGCCGACGCTCTCCGACCCCGCCCTTCTTTGCGCCGACGCGGCCTT
AGATGCAGGCGCGTCTTTCTACGGCCTGGGGTCCGGTCAAGAAGGTGATG
ACTGTAGCATGAGCCAGGGAGCCTCCGGCAACCATCCGACGCGCCGCAGC
TTTCTCTTGAACCCCGACGGACCCTCTCTGCCCCTCCAGCACCCCCACCA
GGCCTCGCAATACCATTCAAAACGCCCGCGTCAGCAGCAGAATCAAGAAG
AGCAAACCCATGTCCCCTACCACGCGTTGAAGCAGCCAGCACAGCTGCAT
TTCTCTCCAGGGCGGCGTCCCGCACCGCACCATCAGCTTCCAGCACATGC
CTCGGCGACCTATTTGGTCAGCCCCACGCAGACTGTCATGGAGAGCTTTT
TGAAACTCCACGCCCAGTCCCGTATTTGCCGCGGCAAGTCACTGGCGGTC
ATGCGGTCATGGGCTCTCGCTTACTCCAAGGGCCTCGGCGCCGCCGCCCT
AGGAGACAGGCTCAGCGTGCTTTCGGCGGCCTTGGGAATCGACTGGAAAA
CGGCTCTGACGGACCCGGCGACTGTCGAAGAGGCCGCCAGGGCAACGACA
GGGAGCACCGCGCCTGAAGCGGTGGTGGCGTTTGAGCCGGCCCACCTCGA
CCCGTTCTTGCGGGCGCTTTATACGGATGCCAGCGCAGCTGCAGCCCTGG
TGGCATGCCAGGGTCACACACAGCTCCTCGGCAACGCCCTTTTCTCTCGC
GATTTCATCGACCCCGCCTCATGCAACGCAGCGTGGGTGCAGGTCCGAGA
GCGACAGCAGGAGGCAGGCACGGACCCGATGGACATCTTGGGCGGCCTCC
TCAGTCGGGAGGACCAGGGGGAGTTCTTCCACTCGGTGGGGGCCATGCTC
TTCAGCAACCCGCGGCCTTGCGCGGAGATGGCGCACATTGCTCGTGTCCT
GACCCGACAACGGGAGAGTATCCTGGCCTTGGTTCGTGTTCGGTTCCATC
TGGCGGATGGGGGGGGCTACTCGGCTTTCGTGCTCAGCTTCCAACGGTTG
CCTTGCAGCTCGCGCTACATGCTTCCCTCGGCCGCTGTGACGCCCTCTGT
CTCCACACACTCTGCAGGCCAAGGACCAGCTAGGACGGCAAGCAACGGAT
CCACGAGCATCAGCTCCTGCACAACCGGCAGCAACAGCGGCAGCGCTGGC
GGGGGGGGGGGCATGCGGCGGGGGGCAAGTACCTCCAGTAACAGCAGCAG
TACCAGCGACGGCCTGAATCTACAAGGCAACGCAGAAGGACAAGGGGAGG
ATGACGATACCTCGGCCTCGGCTCGTTCGACCACCAGCAGTGATTTCAGC
TCGTTTTCGAGCCATCATCGTGATCAGCAACAGCATCCGCGGCACCCTCA
GCCGCCATTAAGACAGCAAGACGAGGTCGAGGGTCAAAAACGCCCCAGAC
ACTTGTCTCCGCCCTTTCTTGTTCATGGAGCGAATGCCTCTGCAGCTGCC
ATGGCCGGCCGAGTCTCGGGTAGCTATCCCGGCTCGGGGGAGGCGGGAGA
GGGGAAGGCGGCGCTTTCGCCTTCGAACACAGTGTACGGAGGAGCGCAAC
AAGTCAAAGGTGGGGAGGTCTCCGTCCTGCACAGTAATAATGGGCAACGA
CATGCGCAGAATCCGGAGGGAATTGAAAAAGAGCAGCTATCGCAGCCGAG
CTGGCTTCGAGGCGTGGAGGACACCTGGTGGGTCAGTGCAGGACCGCATG
ACTTGGAGCGGGCCCCCGCAGGGTTGCCGACGCTGGAAGCGGGCGAAGGC
ATGCCTCATGGGATGGGAACGGATGCGAAGATCCCTCCAACTGCCACGGA
TGCCGCGGGGGGGGATGGGCAGCACGGGGGGGGAGGAGAGGGGCCCTTGG
AAAGTGCCTTGACCGATGCGCTCGCAGGTGAGAACGCCCGTGCGACGGAG
CGGGATGAAATGTTGCATTTCTTGGAAGAGTATTTCTAG

protein sequence of rna4036

>rna4036-protein ID=rna4036-protein|Name=rna4036|organism=Nannochloropsis gaditana|type=polypeptide|length=689bp
MRGKAPNQPSSLQREASTRRKRKPTSFSLAPQLSRSGITVLTLLLCVWAC
TAFFYAPLPFRRSPIAASSSSSPPPSSEASSALARYEKAHAFVAAARPRT
PIFWMAPLIARVWKNYANSKRAASKDCSCGGLGGCGCAGGVSKRGDRTVL
SMATSAPAKRTPRGQTTGRGRRVPPRPAAGSRPVHVVAVVPGHGARGKLE
APWTEVMQHMHRRMQYVDPAFALHVVTEEEILDRGAAALAHLPLGPSSGL
PPAPFPSSPSSSPSTAAASASGVPDAMYFLDVKNPKVAHELKGYMAQVPH
LIALDSCPELAQKSRIGPARPYGPLAGFWKAFPVPTERKRLLELFETVRG
FWKRGHSDDVLYSVLVVINAVLVDIPAVSEILKPVTLQALRCMLGNCGAQ
IIDCQRNPACKAALSCLEQCAPNDQVCRYRCIVQYESREFEQFALCILQK
HNCLQNHAAIPMSPDPAPLSHFRGEPLSHEAAEEIQFGHLGQLQQGCPWS
WKVIAGVNPAYDFFPSQHMTYYRKGQALWYQPVFRVITFDGREVWRRRLY
RVRRGKVPGTFYYSVLDNGVTSSEFWRILDAADDLSWVLFYYSGAAAAAG
QSYTGAILASPTGEWPSAEPCKARILAALDRAGIKEWELFNVHHDGSDGA
PLEIDPMAEARFMYPGWAGARTSQADDEGRVTLAPAAVL

mRNA from alignment at CM002462.1:678582..681612+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4036 ID=rna4036|Name=rna4036|organism=Nannochloropsis gaditana|type=mRNA|length=3031bp|location=Sequence derived from alignment at CM002462.1:678582..681612+ (Nannochloropsis gaditana)
GTGGCCAGCCCCCCATTTGCAGAACGCGCACTCGCAAAGGTGCCATGTTA
GGTGCCACGCGGCATAATTTTCCGCACGCTACTTTCCTTTCATTTCTTGG
TGCACAGGCGAAACACGAAAATGAGGGGCAAGGCGCCAAATCAGCCGTCA
TCGTTACAGCGAGAAGCGTCAAccaggagaaaaagaaagccaaCTTCATT
TAGCCTCGCGCCCCAGCTGTCCAGGTCTGGCATCACAGTCTTGACCTTGC
TTTTGTGCGTTTGGGCATGTACGGCTTTTTTCTACGCACCCCTGCCGTTT
AGACGCTCTCCCAttgcagcttcctcctcgtcgtcacctcctccgtcgtc
tgaggcctcctccgcgttgGCCCGCTATGAAAAGGCACATGCTTTCGTCG
CCGCGGCCCGACCGCGCACACCGATCTTCTGGATGGCACCCTTGATCGCC
CGCGTGTGGAAGAATTACGCAAACTCCAAGCGGGCAGCCTCAAAAGACTG
TAGCTGCGGTGGACTCGGGGGTTGTGGATGCGCGGGTGGTGTCTCGAAGC
GTGGTGACCGCACTGTCCTGAGCATGGCGACAAGTGCACCCGCCAAACGA
ACACCCCGGGGGCAGACCacgggcagaggaagacgcgtcCCGCCTCGCCC
GGCCGCCGGCTCGAGGCCCGTGCATGTGGTGGCCGTCGTTCCCGGCCATG
GGGCCCGCGGGAAGCTGGAGGCCCCCTGGACGGAGGTGATGCAGCACATG
CATCGGCGCATGCAGTATGTAGACCCTGCCTTCGCTCTGCATGTggtgac
agaggaggagattctGGACCGGGGCGCGGCGGCCCTCGCGCATCTGCCCC
TGGGGCCTTCCTCTGGACTCCcacccgcccccttcccttcctctccctcc
tcttccccttccaccgccgcTGCGTCGGCCTCAGGTGTGCCCGACGCCAT
GTACTTCCTTGACGTCAAGAATCCGAAGGTGGCACACGAGCTGAAAGGCT
ACATGGCACAGGTCCCGCACCTGATCGCCCTTGACTCGTGTCCGGAGCTC
GCGCAAAAAAGTCGCATCGGCCCTGCTCGACCCTACGGACCTCTGGCTGG
TTTTTGGAAAGCGTTCCCCGTACCCACGGAGCGGAAGCGCCTGTTGGAGC
TCTTCGAGACGGTGCGCGGCTTTTGGAAGCGGGGCCACTCGGACGACGTG
CTCTACAGCGTCCTGGTCGTCATCAACGCCGTGCTTGTGGACATCCCCGC
GGTCTCAGAGATTCTCAAGCCCGTGACGCTCCAGGCCCTTCGTTGCATGC
TGGGCAACTGCGGGGCGCAAATCATCGACTGCCAGCGCAATCCCGCGTGC
AAGgccgccctctcctgcctggAGCAGTGTGCCCCCAACGACCAGGTCTG
CCGGTACCGGTGCATCGTCCAGTATGAGTCGCGGGAGTTCGAGCAATTTG
CCCTCTGCATCCTCCAGAAGCACAATTGCCTGCAGAACCACGCCGCCATC
CCCATGTCCCCGGACCCCGCCCCGCTCTCTCACTTTCGAGGGGAACCCCT
TAGCCacgaggcggccgaggagatCCAGTTCGGGCACTTGGGCCAGCTCC
AGCAAGGCTGCCCCTGGAGTTGGAAGGTGATCGCCGGCGTCAACCCCGCC
TAcgactttttcccctcccagcaCATGACCTACTACCGGAAGGGGCAGGC
CTTGTGGTACCAGCCAGTCTTCCGCGTCATCACCTTCGACGGCAGGGAAG
TGTGGCGACGCCGGCTCTACCGCGTGCGTCGTGGGAAAGTTCCTGGGACC
TTCTATTACTCGGTCTTGGACAACGGCGTGACCAGCTCCGAGTTCTGGCG
CATTTTGGATGCGGCCGATGATCTGTCCTGGGTCTTGTTCTACTACAgtg
gggcggcggcggcagcgggtCAGTCGTACACGGGTGCGATTTTGGCCTCG
CCCACAGGCGAGTGGCCGTCCGCGGAGCCATGCAAAGCCAGGATTCTGGC
GGCTTTGGACCGGGCGGGCATCAAGGAATGGGAGCTCTTCAACGTGCATC
ACGACGGGTCGGACGGAGCCCCCTTAGAGATCGATCCCATGGCGGAGGCT
CGCTTCATGTACCCTGGATGGGCGGGCGCGAGAACCAGTCAGGCCGATGA
CGAGGGGCGTGTCACACTGGCTCCGGCCGCTGTACTGTAATATATCGAAT
GTGTAAAACCAGGaaagggaatggggaaggagaagggcctcGAGTTGACG
CGGGTAGGTCTTGTCGCACACATGCCTTCAAGCACGGACGATTCGCGTGG
GCATGAGTTGCGCTTGCATCCTGGTgtagatggaggagagaagcgCCCAC
ATCCGAGTCATGTATTTGATTAGGAATTGTTGGGTTCGTGAATGTATGCG
AGGTACCCGGTGCACGCGCAGAATGTTATTTTAGTGTTTAGAGCAGAACC
TGCTGGGGAGGTGCAATGTATGAaacatggaagaggaaaagaaaattaGA
AAGATAACCCTCAGCAGTCTCAGCAGTACTTTAACGACTCAGAAATGCGC
GAGGccaaaaaggaaaggagagagtaATATCCATGACGCGGACAGCCACG
GGGTGTTCGAGACTGCGGGGTCCGTCCTCTCTCATTGGTATTTTTTTCGT
TTTCATGTGTGTGATGTCTCGTCTTCGTCTGCCCTTACGTGTAAAAAAAA
ACTTCCTTTCACAACACTCAGAGACTCTCTCGGACCCGGTTCCACACACA
CTTTCACAGCCCTGGAAGCCCCTTCCCGattcttcgtcctccacctcttc
cccagCCTTATATTTTTGCGAGCAAATTTATAAAATAAGCACGACTGCGG
CCAAAGCGATTCTTGCTTCACCTTGCAGGAAATGTACTACCGTCCGCTCC
ACGCTATTTTCGGCTGACCCACTATATAAACAACGGCCCTTGCTtttgct
tccccttctccattcCATATCGTGCTAATCTGTAATATTACTTCACCCTT
CTTTAGATTAAAATGAAATCGACGTGTGCCC

Coding sequence (CDS) from alignment at CM002462.1:678582..681612+

>rna4036 ID=rna4036|Name=rna4036|organism=Nannochloropsis gaditana|type=CDS|length=2070bp|location=Sequence derived from alignment at CM002462.1:678582..681612+ (Nannochloropsis gaditana)
ATGAGGGGCAAGGCGCCAAATCAGCCGTCATCGTTACAGCGAGAAGCGTC
AAccaggagaaaaagaaagccaaCTTCATTTAGCCTCGCGCCCCAGCTGT
CCAGGTCTGGCATCACAGTCTTGACCTTGCTTTTGTGCGTTTGGGCATGT
ACGGCTTTTTTCTACGCACCCCTGCCGTTTAGACGCTCTCCCAttgcagc
ttcctcctcgtcgtcacctcctccgtcgtctgaggcctcctccgcgttgG
CCCGCTATGAAAAGGCACATGCTTTCGTCGCCGCGGCCCGACCGCGCACA
CCGATCTTCTGGATGGCACCCTTGATCGCCCGCGTGTGGAAGAATTACGC
AAACTCCAAGCGGGCAGCCTCAAAAGACTGTAGCTGCGGTGGACTCGGGG
GTTGTGGATGCGCGGGTGGTGTCTCGAAGCGTGGTGACCGCACTGTCCTG
AGCATGGCGACAAGTGCACCCGCCAAACGAACACCCCGGGGGCAGACCac
gggcagaggaagacgcgtcCCGCCTCGCCCGGCCGCCGGCTCGAGGCCCG
TGCATGTGGTGGCCGTCGTTCCCGGCCATGGGGCCCGCGGGAAGCTGGAG
GCCCCCTGGACGGAGGTGATGCAGCACATGCATCGGCGCATGCAGTATGT
AGACCCTGCCTTCGCTCTGCATGTggtgacagaggaggagattctGGACC
GGGGCGCGGCGGCCCTCGCGCATCTGCCCCTGGGGCCTTCCTCTGGACTC
Ccacccgcccccttcccttcctctccctcctcttccccttccaccgccgc
TGCGTCGGCCTCAGGTGTGCCCGACGCCATGTACTTCCTTGACGTCAAGA
ATCCGAAGGTGGCACACGAGCTGAAAGGCTACATGGCACAGGTCCCGCAC
CTGATCGCCCTTGACTCGTGTCCGGAGCTCGCGCAAAAAAGTCGCATCGG
CCCTGCTCGACCCTACGGACCTCTGGCTGGTTTTTGGAAAGCGTTCCCCG
TACCCACGGAGCGGAAGCGCCTGTTGGAGCTCTTCGAGACGGTGCGCGGC
TTTTGGAAGCGGGGCCACTCGGACGACGTGCTCTACAGCGTCCTGGTCGT
CATCAACGCCGTGCTTGTGGACATCCCCGCGGTCTCAGAGATTCTCAAGC
CCGTGACGCTCCAGGCCCTTCGTTGCATGCTGGGCAACTGCGGGGCGCAA
ATCATCGACTGCCAGCGCAATCCCGCGTGCAAGgccgccctctcctgcct
ggAGCAGTGTGCCCCCAACGACCAGGTCTGCCGGTACCGGTGCATCGTCC
AGTATGAGTCGCGGGAGTTCGAGCAATTTGCCCTCTGCATCCTCCAGAAG
CACAATTGCCTGCAGAACCACGCCGCCATCCCCATGTCCCCGGACCCCGC
CCCGCTCTCTCACTTTCGAGGGGAACCCCTTAGCCacgaggcggccgagg
agatCCAGTTCGGGCACTTGGGCCAGCTCCAGCAAGGCTGCCCCTGGAGT
TGGAAGGTGATCGCCGGCGTCAACCCCGCCTAcgactttttcccctccca
gcaCATGACCTACTACCGGAAGGGGCAGGCCTTGTGGTACCAGCCAGTCT
TCCGCGTCATCACCTTCGACGGCAGGGAAGTGTGGCGACGCCGGCTCTAC
CGCGTGCGTCGTGGGAAAGTTCCTGGGACCTTCTATTACTCGGTCTTGGA
CAACGGCGTGACCAGCTCCGAGTTCTGGCGCATTTTGGATGCGGCCGATG
ATCTGTCCTGGGTCTTGTTCTACTACAgtggggcggcggcggcagcgggt
CAGTCGTACACGGGTGCGATTTTGGCCTCGCCCACAGGCGAGTGGCCGTC
CGCGGAGCCATGCAAAGCCAGGATTCTGGCGGCTTTGGACCGGGCGGGCA
TCAAGGAATGGGAGCTCTTCAACGTGCATCACGACGGGTCGGACGGAGCC
CCCTTAGAGATCGATCCCATGGCGGAGGCTCGCTTCATGTACCCTGGATG
GGCGGGCGCGAGAACCAGTCAGGCCGATGACGAGGGGCGTGTCACACTGG
CTCCGGCCGCTGTACTGTAA

Synonyms

Publications