rna4026, rna4026 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4026
Unique Name	rna4026
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	829
Alignment location	CM002462.1:653318..656026 -

Link to JBrowse

Properties


Property Name	Value
Product	bifunctional aspartokinase i homoserine dehydrogenase i
Orig transcript id	gnl\|cribi\|Naga_100001g91.8107.mrna
Orig protein id	gnl\|cribi\|Naga_100001g91.8107
Gene	AK/HSDH
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:653318..656026 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
AK/HSDH	gene3872	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26596.1	cds4016	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4026	rna4026-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:653318..656026-
coding sequence from alignment at CM002462.1:653318..656026-

mRNA sequence

>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=mRNA|length=829bp
CTCTCATCCTCTCTTAATTTCATCGCATGCACGGCACAGACGAGGATGAG
AGCGCATGCCGTCCTTTTACTTGCCATGGCTACAGCCGTACAGGCCTTTT
GGCCATCGTTTATTGCGGTGAAGCAGAGCTTTTGCAGGAGGAAGGAGGCG
CTGACACTGTGTGCTTTCAAGGGAACTGCCGATCGTCGTGACCACATCCG
CAGCCAAGTAGCCCTCGGAGGGCTTGGCGCTCTCCTGCTGGCAGCAAATC
CTCCACTGGCTTTGGCCGACTCCACTGGCAAATACAGCACCAAACAGACC
GCTAAAAAGCGATATCTGCCCCGGGTGCGCAAGGGCGTGGCCAAATTTCA
GGCTTTAGGCGAGACCTTGGACAATCCCGAGACAATCAAGGCTTTCAATC
AGTACGTGGAAGACAGCTTAGCCGCGGCTCTTGCTTTGTACGGCTCCTCT
ACGCGCATTGGTGAGCTACCGGATCCAAAATCCCGCACCGTGGAGAAAGA
GGCTGAGGATTTCGTGAAGGAGGTAAACGCCATGGCTAAGGGGGGTGACG
TGAAAGCCTCATACGAAGGTGCTAAAACTGCACTGGCTGCGTACCTCGCG
GGCACTAAGCTAGAGCCTTTAAGTGATCCAGTTTACAAAGACATGGATAG
ATAAGTGGCAGGGAATAGCCAGAGAGAGAGAGTACGTCGGTGAGGATCGA
AGCTTCGTATTTGTGTAATTGTATTTCGAATTGCGCACCCCACACCGGAT
GGCGCGATGGTGTGACGGCACATACAGCCTTGATGTGGGCTTTAAAAGGA
ACAATCAAATCGAGTGGTAGGAAGCACGC

protein sequence of rna4026

>rna4026-protein ID=rna4026-protein|Name=rna4026|organism=Nannochloropsis gaditana|type=polypeptide|length=902bp
MPDRRIGDTTRWCVYKFGGTSVASAECYQTVRDIILTAQESTPRMAVVVS
AMGGKPKVTDLLIETVMLAAKGDVEGYEQMLHLVREKHLACATQLFSPAG
AQFYETELDEDIRNLRDILRAVSFMRYSGEKIIELVSGHGEIWSARMLTR
LFRDGGHDFMFVDARKVLFVDESGESGPDVMWERSKGALDDYMAQSPGAC
PVITGFVASTVEGVVTTLKRDGSDYSASIFGRLLNATGITIWTDVDGVLS
ADPRRVPEAKVLADVSYSEAMELAYFGAKVIHPKTMTPAVAASIPIFIRN
TFNPSFSGTRIYVSSASTMDRDKCVCGFSTVDNMALLNLEGSGMIGVPGI
ANRLFGAIQQTGISVSLIAQASSEYSISFATRQCDADAAAKAVTDEFFRE
FKSHLMNKVDIIRPCSIIAAVGDGMSNTKGAAGKFFKALGNAGVNVLAIS
QGSSERIISAVVKGSDSTKSLRAVHSAFLLSNQVISVGLVGRGKVAKAMV
EVLRAQADMLYGRFGTEFHLRAVMDSTGMLLSSTGPTLGLEGLDAAFNAY
KLPADLKAFTKHVRAEHLPHAIIIDCSDAEEVAREHPGWLEQNIHVVTAN
KKGLCGSMSLYNAILRQRKVKQHNYMYEVTVGGGLRIITSLQAMLIGGDS
ILRLEGALSASMNYVMGLISPVPPCRVPSLDSNGRSSSISSSMSNSSGSG
GLRRSYSSLLNGHTHETAKTPLSLSEAVSEASRLEVFERDPLNDLNGVEM
AQKLLVLAREMGLPLRLEDVKIETLVPKDTPLDEIHRYNEEVAARVTAAR
IRGSVLRYVGCINEAGEAEIGIQEVPFEHPFATVRGAGYCFRIFSAFHSP
DPITIQGTIGLPKATAAGLFSDLLFVAQRLGATDKGHTVQGVRVLSDSLI
EA

mRNA from alignment at CM002462.1:653318..656026-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=mRNA|length=2709bp|location=Sequence derived from alignment at CM002462.1:653318..656026- (Nannochloropsis gaditana)
ATGCCGGACAGAAGAATAGGAGATACAACTCGGTGGTGTGTTTACAAATT
TGGGGGCACGAGTGTGGCAAGTGCAGAATGCTATCAAACTGTGCGGGACA
TCATCTTGACGGCCCAAGAAAGCACGCCCAGGATGGCCGTGGTCGTGTCG
GCCATGGGGGGGAAGCCGAAAGTGACGGATTTACTCATTGAGACCGTCAT
GCTTGCGGCCAAGGGAGACGTCGAAGGCTATGAGCAGATGCTGCACCTAG
TCCGAGAGAAGCACCTTGCATGCGCAACGCAGCTCTTCTCGCCGGCGGGG
GCTCAATTTTATGAGACGGAGCTGGACGAGGACATTCGAAATTTGCGAGA
TATTTTGCGAGCTGTCTCTTTCATGCGGTACAGCGGAGAAAAAATAATAG
AACTCGTCTCCGGACACGGAGAGATATGGTCCGCCCGCATGTTGACGCGG
CTCTTTCGGGACGGAGGGCACGACTTCATGTTCGTGGATGCCCGGAAGGT
GCTCTTTGTGGACGAATCGGGCGAGAGCGGACCTGACGTGATGTGGGAGC
GGTCCAAGGGGGCGTTAGATGACTACATGGCCCAGAGTCCGGGCGCCTGT
CCGGTCATCACGGGCTTCGTCGCCTCCACGGTGGAGGGCGTGGTCACGAC
ATTGAAGCGGGACGGCAGCGACTACTCAGCCAGCATTTTCGGCCGCCTCT
TGAACGCCACGGGCATCACCATCTGGACCGACGTGGACGGCGTCCTTTCC
GCCGATCCTCGCCGTGTCCCGGAGGCCAAGGTCCTCGCAGACGTGTCCTA
CAGCGAGGCCATGGAGCTTGCTTATTTTGGCGCCAAAGTCATTCACCCGA
AGACGATGACGCCCGCCGTGGCGGCCTCCATCCCCATTTTTATCCGCAAC
ACTTTCAACCCGAGCTTCTCCGGCACCCGCATCTACGTCTCCTCCGCCTC
CACCATGGACCGGGACAAGTGCGTCTGCGGCTTTTCCACGGTGGACAACA
TGGCGCTCCTGAACCTGGAAGGCTCGGGGATGATCGGGGTCCCCGGCATC
GCCAACCGGCTCTTCGGCGCCATCCAGCAGACAGGCATCTCCGTATCACT
CATCGCCCAGGCGAGCTCGGAGTACTCCATCTCCTTCGCCACCCGCCAGT
GCGACGCGGACGCGGCGGCCAAGGCGGTCACGGACGAGTTCTTCCGGGAG
TTCAAGTCCCACCTCATGAACAAGGTGGACATCATCCGGCCCTGCTCCAT
CATCGCCGCCGTAGGGGATGGCATGAGCAACACCAAGGGGGCGGCGGGGA
AGTTCTTCAAGGCCCTGGGCAACGCGGGCGTTAACGTGCTGGCCATCTCG
CAGGGGTCCTCGGAGAGAATCATCTCCGCCGTGGTCAAGGGCTCGGACTC
GACTAAGTCCCTCCGGGCCGTCCACTCCGCCTTTTTGCTCTCCAACCAAG
TCATCAGCGTCGGCCTGGTGGGCCGCGGGAAGGTGGCCAAGGCGATGGTG
GAGGTGCTTCGGGCCCAAGCGGACATGCTCTACGGCCGCTTTGGCACCGA
GTTCCACCTCCGGGCAGTGATGGACTCGACGGGCATGCTCTTGAGCAGCA
CTGGCCCCACCCTGGGTCTAGAGGGTCTAGATGCGGCCTTCAACGCATAC
AAGCTTCCCGCCGACTTGAAAGCTTTCACGAAGCACGTGCGGGCGGAGCA
CTTGCCGCACGCGATCATCATCGACTGCTCCGACGCCGAGGAGGTGGCCA
GAGAGCACCCGGGCTGGCTTGAACAGAACATCCATGTGGTTACGGCCAAC
AAGAAAGGGCTCTGCGGGAGTATGTCGCTCTATAATGCGATCTTGCGGCA
GCGGAAAGTGAAGCAGCACAACTACATGTACGAGGTCACCGTGGGGGGCG
GGCTCCGGATCATCACCTCCTTGCAAGCCATGCTGATCGGCGGGGACAGC
ATCCTCCGCCTCGAGGGCGCCCTCTCGGCCTCCATGAACTACGTGATGGG
CTTGATCTCCCCCGTGCCCCCCTGTCGGGTACCCTCCTTGGACAGCAACG
GCCGCAGCAGCAGCATCAGCAGCAGCATGAGCAACAGCAGCGGCAGCGGG
GGGCTTCGACGAAGCTACTCGAGCTTGCTGAACGGGCACACGCACGAGAC
AGCGAAGACACCCCTCAGCCTCTCAGAGGCCGTCTCGGAAGCCTCGCGGC
TGGAAGTGTTCGAGCGTGACCCCCTGAACGATCTGAACGGCGTCGAGATG
GCGCAGAAGCTCCTGGTGCTGGCCCGCGAGATGGGCCTGCCCTTGCGCCT
GGAGGACGTGAAGATCGAGACACTCGTGCCCAAGGACACTCCTCTAGACG
AGATCCACCGGTACAACGAGGAGGTGGCGGCGCGCGTGACGGCGGCGCGA
ATCCGGGGTTCGGTGTTGCGGTACGTTGGCTGCATCAACGAGGCGGGCGA
GGCCGAGATCGGCATCCAGGAGGTTCCCTTCGAGCACCCCTTTGCCACCG
TTCGCGGCGCCGGCTACTGCTTCCGCATCTTCTCCGCCTTCCACAGCCCC
GACCCCATCACCATCCAGGGCACCATCGGACTCCCCAAGGCCACGGCGGC
CGGCCTCTTCTCGGACTTGCTCTTCGTCGCCCAACGCCTGGGGGCCACGG
ACAAGGGGCACACGGTCCAGGGGGTCCGGGTCCTGAGTGACTCCCTCATC
GAGGCGTAG

Coding sequence (CDS) from alignment at CM002462.1:653318..656026-

>rna4026 ID=rna4026|Name=rna4026|organism=Nannochloropsis gaditana|type=CDS|length=2709bp|location=Sequence derived from alignment at CM002462.1:653318..656026- (Nannochloropsis gaditana)
ATGCCGGACAGAAGAATAGGAGATACAACTCGGTGGTGTGTTTACAAATT
TGGGGGCACGAGTGTGGCAAGTGCAGAATGCTATCAAACTGTGCGGGACA
TCATCTTGACGGCCCAAGAAAGCACGCCCAGGATGGCCGTGGTCGTGTCG
GCCATGGGGGGGAAGCCGAAAGTGACGGATTTACTCATTGAGACCGTCAT
GCTTGCGGCCAAGGGAGACGTCGAAGGCTATGAGCAGATGCTGCACCTAG
TCCGAGAGAAGCACCTTGCATGCGCAACGCAGCTCTTCTCGCCGGCGGGG
GCTCAATTTTATGAGACGGAGCTGGACGAGGACATTCGAAATTTGCGAGA
TATTTTGCGAGCTGTCTCTTTCATGCGGTACAGCGGAGAAAAAATAATAG
AACTCGTCTCCGGACACGGAGAGATATGGTCCGCCCGCATGTTGACGCGG
CTCTTTCGGGACGGAGGGCACGACTTCATGTTCGTGGATGCCCGGAAGGT
GCTCTTTGTGGACGAATCGGGCGAGAGCGGACCTGACGTGATGTGGGAGC
GGTCCAAGGGGGCGTTAGATGACTACATGGCCCAGAGTCCGGGCGCCTGT
CCGGTCATCACGGGCTTCGTCGCCTCCACGGTGGAGGGCGTGGTCACGAC
ATTGAAGCGGGACGGCAGCGACTACTCAGCCAGCATTTTCGGCCGCCTCT
TGAACGCCACGGGCATCACCATCTGGACCGACGTGGACGGCGTCCTTTCC
GCCGATCCTCGCCGTGTCCCGGAGGCCAAGGTCCTCGCAGACGTGTCCTA
CAGCGAGGCCATGGAGCTTGCTTATTTTGGCGCCAAAGTCATTCACCCGA
AGACGATGACGCCCGCCGTGGCGGCCTCCATCCCCATTTTTATCCGCAAC
ACTTTCAACCCGAGCTTCTCCGGCACCCGCATCTACGTCTCCTCCGCCTC
CACCATGGACCGGGACAAGTGCGTCTGCGGCTTTTCCACGGTGGACAACA
TGGCGCTCCTGAACCTGGAAGGCTCGGGGATGATCGGGGTCCCCGGCATC
GCCAACCGGCTCTTCGGCGCCATCCAGCAGACAGGCATCTCCGTATCACT
CATCGCCCAGGCGAGCTCGGAGTACTCCATCTCCTTCGCCACCCGCCAGT
GCGACGCGGACGCGGCGGCCAAGGCGGTCACGGACGAGTTCTTCCGGGAG
TTCAAGTCCCACCTCATGAACAAGGTGGACATCATCCGGCCCTGCTCCAT
CATCGCCGCCGTAGGGGATGGCATGAGCAACACCAAGGGGGCGGCGGGGA
AGTTCTTCAAGGCCCTGGGCAACGCGGGCGTTAACGTGCTGGCCATCTCG
CAGGGGTCCTCGGAGAGAATCATCTCCGCCGTGGTCAAGGGCTCGGACTC
GACTAAGTCCCTCCGGGCCGTCCACTCCGCCTTTTTGCTCTCCAACCAAG
TCATCAGCGTCGGCCTGGTGGGCCGCGGGAAGGTGGCCAAGGCGATGGTG
GAGGTGCTTCGGGCCCAAGCGGACATGCTCTACGGCCGCTTTGGCACCGA
GTTCCACCTCCGGGCAGTGATGGACTCGACGGGCATGCTCTTGAGCAGCA
CTGGCCCCACCCTGGGTCTAGAGGGTCTAGATGCGGCCTTCAACGCATAC
AAGCTTCCCGCCGACTTGAAAGCTTTCACGAAGCACGTGCGGGCGGAGCA
CTTGCCGCACGCGATCATCATCGACTGCTCCGACGCCGAGGAGGTGGCCA
GAGAGCACCCGGGCTGGCTTGAACAGAACATCCATGTGGTTACGGCCAAC
AAGAAAGGGCTCTGCGGGAGTATGTCGCTCTATAATGCGATCTTGCGGCA
GCGGAAAGTGAAGCAGCACAACTACATGTACGAGGTCACCGTGGGGGGCG
GGCTCCGGATCATCACCTCCTTGCAAGCCATGCTGATCGGCGGGGACAGC
ATCCTCCGCCTCGAGGGCGCCCTCTCGGCCTCCATGAACTACGTGATGGG
CTTGATCTCCCCCGTGCCCCCCTGTCGGGTACCCTCCTTGGACAGCAACG
GCCGCAGCAGCAGCATCAGCAGCAGCATGAGCAACAGCAGCGGCAGCGGG
GGGCTTCGACGAAGCTACTCGAGCTTGCTGAACGGGCACACGCACGAGAC
AGCGAAGACACCCCTCAGCCTCTCAGAGGCCGTCTCGGAAGCCTCGCGGC
TGGAAGTGTTCGAGCGTGACCCCCTGAACGATCTGAACGGCGTCGAGATG
GCGCAGAAGCTCCTGGTGCTGGCCCGCGAGATGGGCCTGCCCTTGCGCCT
GGAGGACGTGAAGATCGAGACACTCGTGCCCAAGGACACTCCTCTAGACG
AGATCCACCGGTACAACGAGGAGGTGGCGGCGCGCGTGACGGCGGCGCGA
ATCCGGGGTTCGGTGTTGCGGTACGTTGGCTGCATCAACGAGGCGGGCGA
GGCCGAGATCGGCATCCAGGAGGTTCCCTTCGAGCACCCCTTTGCCACCG
TTCGCGGCGCCGGCTACTGCTTCCGCATCTTCTCCGCCTTCCACAGCCCC
GACCCCATCACCATCCAGGGCACCATCGGACTCCCCAAGGCCACGGCGGC
CGGCCTCTTCTCGGACTTGCTCTTCGTCGCCCAACGCCTGGGGGCCACGG
ACAAGGGGCACACGGTCCAGGGGGTCCGGGTCCTGAGTGACTCCCTCATC
GAGGCGTAG

Synonyms

Publications