rna4025, rna4025 (mRNA) Nannochloropsis gaditana

Overview
Namerna4025
Unique Namerna4025
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1525
Alignment locationCM002462.1:652350..653178 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g92.8218.mrna
Orig protein idgnl|cribi|Naga_100001g92.8218
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:652350..653178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g92gene3871Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4025rna4025-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26707.1cds4015Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4025 ID=rna4025|Name=rna4025|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp
CCAAAAGGCCTGTACGGCTGTAGCCATGGCAAGTAAAAGGACGGCATGCG
CTCTCATCCTCGTCTGTGCCGTGCATGCGATGAAATTAAGAGAGGATGAG
AGGGTCAAGCACCTTTCTCGTGAAAACCGGCGACCCCTCCCTCGGCGAGC
AGAGTTACATTATTTATAATTCAAGCTTTAAATTTAACAATGACACCATC
AGATGCCCTGGCAGTCAGTCAAATTTAGCAAGGCGGCCACATTCACCGCC
TAATCCCTCCTTTAACCTCCCCCACGACCTGTCTCCTTTTCCCGGTGCTT
ATCTCACAGGAATGGCTCGGGGCAGGAGCTGCCTACTCCTCTTCAGTGCA
TTGATATCGGTGTCCAATTTTCTACACTCCCATGCCAAAAAGTCAGCTAC
TGCCGTTATTCCCCTCTTCATTCTTCCCTCCGCTCGGGACATCTCCCCTC
AAACCTTGATAACTGCCACGAGGCTGCAGCGCCGTGGCCCGATAGATGCC
CCCCCGGAGTACGGTATGCAGAGAAGACCTTTCGATGGATTACTTTATGC
TTTTTTCCGGGCGAAATTGGTGCAGCAGCTGGGTGGGTCGGATACGGCAA
GCAAGGATTTTGCTGGACTCATCGAATTGATTCGGAAACTGAATACACAC
TTCCCTGCCAGTGGCAAAGTTGGTACTCAGAAAGCGGCGCAAAATATTCT
ACGTTCTCTGTTCCCGTCTTGGCTCCCCGCTGCTTTCGCTGTCATGTTCA
GCAAGCCTTTCCCCGCGTTCTCTGCTCGCATGAATGCTATCATAACGGGA
CTGACCACCTATTGGCTGATGGGGGAAAGCGAAATCATTGATGTCGATGT
TGACGGCGGTAGCGTGGGTGTGGGTCAAGGCTTGCTCGTCAAACGCTGCC
GCTACCTAGAGGAGGCAGGGTGTGCAAGCATCTGTGTCAACACCTGCAAG
ATTCCTACTCAAAATTTCTTCTGTCAGGACATGGGTCTGCCCCTGACCAT
GACGCCAGACTACGACGACTTCAGTTGCACCTTTGCTTTCGGGCTTACCC
CGCCCCCTGTATTCGACGATGAGGCCATGCGAGTGGCGTGCTTTAGCCAG
TGTCCGACGGCCAAAGCCCCGACTGGTGAGTTGTCAAATTGCCATCAAAT
CGAGTTATGACAAAATATATGTCTCTAAGGCTCCTGTTTTCGTAGCAGGG
GTGGTTTGGGCTTCTGTGATGCTGCTTCAATAATTTGAAAAAGATGAGAG
GTTATGTTTGCCTCAAAGCCCTCTTCAACAGCGAGTGTCGAGAGAGATGT
CGGTCTCGATCTCAGAAGCTAGCAATTTGCCGCCGCTGACCGGATGCGCA
CAAACGAAGCATTCTGATGTAGCTGATACTTGCATTGATCAATTTGTGTA
TACAATAGTTTCCTACATACAAGAAATCAACGAACAAAAATACGATTTGT
TGATAGCACCACCATTTTGCTTAGATGGACGAGGTTCTTGTTCGCACTGT
TAAAAAGAAATATCGATCACGCCGC
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protein sequence of rna4025

>rna4025-protein ID=rna4025-protein|Name=rna4025|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MRAHAVLLLAMATAVQAFWPSFIAVKQSFCRRKEALTLCAFKGTADRRDH
IRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAK
FQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVE
KEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVYKDM
DR
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mRNA from alignment at CM002462.1:652350..653178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4025 ID=rna4025|Name=rna4025|organism=Nannochloropsis gaditana|type=mRNA|length=829bp|location=Sequence derived from alignment at CM002462.1:652350..653178+ (Nannochloropsis gaditana)
ctctcatcctctcttAATTTCATCGCATGCACGGCACAGACGAGGATGAG
AGCGCATGCCGTCCTTTTACTTGCCATGGCTACAGCCGTACAGGCCTTTT
GGCCATCGTTTATTGCGGTGAAGCAGAGCttttgcaggaggaaggaggcg
ctgacACTGTGTGCTTTCAAGGGAACTGCCGATCGTCGTGACCACATCCG
CAGCCAAGTAGCCCTCGGAGGGCTTGGCGCTCTCCTGCTGGCAGCAAATC
CTCCACTGGCTTTGGCCGACTCCACTGGCAAATACAGCACCAAACAGACC
GCTAAAAAGCGATATCTGCCCCGGGTGCGCAAGGGCGTGGCCAAATTTCA
GGCTTTAGGCGAGACCTTGGACAATCCCGAGACAATCAAGGCTTTCAATC
AGTACGTGGAAGACAGCTTAGCCGCGGCTCTTGCTTTGTACGGCTCCTCT
ACGCGCATTGGTGAGCTACCGGATCCAAAATCCCGCAccgtggagaaaga
ggctgaGGATTTCGTGAAGGAGGTAAACGCCATGGCTAAGGGGGGTGACG
TGAAAGCCTCATACGAAGGTGCTAAAACTGCACTGGCTGCGTACCTCGCG
GGCACTAAGCTAGAGCCTTTAAGTGATCCAGTTTACAAAGACATGGATAG
ATAAGTGGCAGGGAATAgccagagagagagagtACGTCGGTGAGGATCGA
AGCTTCGTATTTGTGTAATTGTATTTCGAATTGCGCACCCCACACCGGAT
GGCGCGATGGTGTGACGGCACATACAGCCTTGATGTGGGCTTTAAAAGGA
ACAATCAAATCGAGTGGTAGGAAGCACGC
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Coding sequence (CDS) from alignment at CM002462.1:652350..653178+

>rna4025 ID=rna4025|Name=rna4025|organism=Nannochloropsis gaditana|type=CDS|length=609bp|location=Sequence derived from alignment at CM002462.1:652350..653178+ (Nannochloropsis gaditana)
ATGAGAGCGCATGCCGTCCTTTTACTTGCCATGGCTACAGCCGTACAGGC
CTTTTGGCCATCGTTTATTGCGGTGAAGCAGAGCttttgcaggaggaagg
aggcgctgacACTGTGTGCTTTCAAGGGAACTGCCGATCGTCGTGACCAC
ATCCGCAGCCAAGTAGCCCTCGGAGGGCTTGGCGCTCTCCTGCTGGCAGC
AAATCCTCCACTGGCTTTGGCCGACTCCACTGGCAAATACAGCACCAAAC
AGACCGCTAAAAAGCGATATCTGCCCCGGGTGCGCAAGGGCGTGGCCAAA
TTTCAGGCTTTAGGCGAGACCTTGGACAATCCCGAGACAATCAAGGCTTT
CAATCAGTACGTGGAAGACAGCTTAGCCGCGGCTCTTGCTTTGTACGGCT
CCTCTACGCGCATTGGTGAGCTACCGGATCCAAAATCCCGCAccgtggag
aaagaggctgaGGATTTCGTGAAGGAGGTAAACGCCATGGCTAAGGGGGG
TGACGTGAAAGCCTCATACGAAGGTGCTAAAACTGCACTGGCTGCGTACC
TCGCGGGCACTAAGCTAGAGCCTTTAAGTGATCCAGTTTACAAAGACATG
GATAGATAA
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Synonyms
Publications