EWM26707.1, cds4015 (CDS) Nannochloropsis gaditana

Overview
NameEWM26707.1
Unique Namecds4015
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:652395..653003 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26707.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g92.8218.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:652395..653003 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26707.1 vs. NCBI_GenBank
Match: gi|585108795|gb|EWM26707.1| (hypothetical protein Naga_100001g92 [Nannochloropsis gaditana])

HSP 1 Score: 410.994 bits (1055), Expect = 3.996e-145
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MRAHAVLLLAMATAVQAFWPSFIAVKQSFCRRKEALTLCAFKGTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVYKDMDR 202
            MRAHAVLLLAMATAVQAFWPSFIAVKQSFCRRKEALTLCAFKGTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVYKDMDR
Sbjct:    1 MRAHAVLLLAMATAVQAFWPSFIAVKQSFCRRKEALTLCAFKGTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVYKDMDR 202          
BLAST of EWM26707.1 vs. NCBI_GenBank
Match: gi|299115697|emb|CBN74262.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5077 bits (223), Expect = 1.073e-18
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 0
Query:   73 LADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETL----DNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMA-----KGGDVKAS--YEGAKTALAAYLAGTKLEPLSDPVYK 198
             ADSTGKYS+K TA+KRYLPR+ K V  FQ L + +     +P++ + F   + DS+ +A+ LYGSS + GE PD KSR +++ A+DF     ++      KGG+ +AS  Y+ A + L  YL G +L+PL   VY 
Sbjct:  116 FADSTGKYSSKATARKRYLPRIVKLVNAFQMLKKDIASGSASPKS-EFFVDVLADSV-SAMDLYGSSMKKGETPDSKSRALQQLAQDFGSTCTSIGKSLGKKGGEEEASKAYDKASSILVKYLEGVELDPLGSDVYN 250          
BLAST of EWM26707.1 vs. NCBI_GenBank
Match: gi|873240369|emb|CEL93463.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 74.3294 bits (181), Expect = 7.418e-13
Identity = 61/176 (34.66%), Postives = 96/176 (54.55%), Query Frame = 0
Query:   32 RKEALTLCA-FKGTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNP--ETIKAFNQYVEDSLAAALALYGS-STRIGELPDPKSRTVEKEAEDFVKEVNAM---AKGGD---VKASYEGAKTALAAYLAGTKLEPLSDPVY 197
            R+EA  L      ++ RR HI + +      A+L AA+ P A+ADSTG+YS+  TAKKRYLPR+ +G+++F +L   ++    + +  F       + AAL LY + + + GE  D KS   +  A++F K V+ M    K  D   +K +Y  A+  L +YL+  +L P+ D  Y
Sbjct:   44 RREAHVLVEDAMSSSSRRVHIGTLLIAP---AVLTAASLP-AVADSTGRYSSIATAKKRYLPRINRGISEFASLKGEVNGGGFDGVSTFLTSRAPDMVAALDLYATGALKKGEYLDKKSLGAKGAADEFTKHVDEMRSAVKAKDKEALKTAYLAAEEDLTSYLSIGELPPIGDATY 215          
BLAST of EWM26707.1 vs. NCBI_GenBank
Match: gi|551658642|ref|XP_005832091.1| (hypothetical protein GUITHDRAFT_109155 [Guillardia theta CCMP2712] >gi|428176225|gb|EKX45111.1| hypothetical protein GUITHDRAFT_109155 [Guillardia theta CCMP2712])

HSP 1 Score: 70.8626 bits (172), Expect = 4.675e-12
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 0
Query:   69 PPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQY---VEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGD---VKASYE 174
            P  A ADSTGK+S+K+TAK RY+PRV+KG+       E +D  E+ +A  +    +E  +  A+ LYG + +  E+PD  S  + K+AE F + + A     D   VKAS++
Sbjct:   33 PTYAFADSTGKFSSKRTAKNRYVPRVKKGL-------EIMDGIESGRATIEQLLEIEPDMVNAMKLYGDAQKKSEVPDKISIRLNKDAEAFSQAIKAAGSNADIAKVKASWQ 137          
The following BLAST results are available for this feature:
BLAST of EWM26707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108795|gb|EWM26707.1|3.996e-145100.00hypothetical protein Naga_100001g92 [Nannochlorops... [more]
gi|299115697|emb|CBN74262.1|1.073e-1842.34expressed unknown protein [Ectocarpus siliculosus][more]
gi|873240369|emb|CEL93463.1|7.418e-1334.66unnamed protein product [Vitrella brassicaformis C... [more]
gi|551658642|ref|XP_005832091.1|4.675e-1238.39hypothetical protein GUITHDRAFT_109155 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4025rna4025Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications