rna4024, rna4024 (mRNA) Nannochloropsis gaditana

Overview
Namerna4024
Unique Namerna4024
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2133
Alignment locationCM002462.1:650927..652451 -

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Properties
Property NameValue
Productprotein of unknown function DUF4033
Orig transcript idgnl|cribi|Naga_100001g93.8112.mrna
Orig protein idgnl|cribi|Naga_100001g93.8112
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:650927..652451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g93gene3870Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26601.1cds4014Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4024rna4024-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4024 ID=rna4024|Name=rna4024|organism=Nannochloropsis gaditana|type=mRNA|length=2133bp
GAGCCTCGTATACTTGCATCGAACGCGTCTTTGAGAGGCAGGCTCCGATT
TTGACAAGCCATCGGACACCAACCCTTACCGCGTGTAATGGGCCTCTCCG
TTTGTCAATCATGAACGAGCCACTACTTCAGAGGAGTAATAGTGACTCCG
CGCTGCCTACTTTGGGTAGCTGGGGCATGCAGAGTATCCTTGTCAGTGGG
CGTATGGGAAGATTGCAAGATTCGGACAGGATCATGGCATTCACGGACGC
AATTCTAGCTATTATATGCACGTCTTGTGCAGTCCCGCTCTGGTCAAATG
GAACACGTAACTTCAACCCGGGAAATTCACTGCCAAGATTTTTGCCGCTT
GGAGCACGTGGATGAGAAACTGCCCCAAATTAATGTGTTATGGATCGCCT
CCATGACGCTGCTTCCCTTTCACTTTGTCATCCTCTTCGTGCCCGCGACC
GCCACGGGCCACCTCCTCTACCTCGGGCTCTGGGCTTGCGTTCTCCTCCT
GGTCGGGGTCGCTTCCCACTGGCTCTCCTCCGCCACCCAACGCCTTTCAG
CTTTACGCCTGGGCGTTCAGGAAAAGAAAGGATGGCAGCAGCGTGACCTG
GCTCTGACGCTCGCCCTATTCCAGGTCGGGCTCGTCACAGCGGGGGCCTC
GCTCCTCGCGCGGGTGGAGCACCTGGACATCTTGACGGACGACTACAAGA
AAGCCTTTCGCCCAGGTCACATCAGGGTCGCAGCTGTCCTTTTCGTCGTG
GGTGTGCTGATTTACTGGCTGTGCCTCGCGCTTCGAATCAATTTTCGGAT
CCTGCAGATGTGGCTGGGGCCACGCAGCGCCGTGCTTTTCAATGGGGCCG
TCCCGCGGGTGCGGGTGGAGATTTTCTCGGACGGCGTCTACGCAGCTGCA
GCGACAGGGCTGATGATTGAGGTGTTGAGCGGGCTTTTGCGCGCCGACGA
GGGTGCCGAGGGGGGGGGCGGGCAGCACGGAGGCTCGGTGTGGCCCAGCC
TCGTCAACTACATCTATTGCTTCCACGTGGTGGCCGTGCTTCACCGCTCG
CATCAAAACATTGTCGCCAAGATTTCTGTCTTCAACGAGCGGCTCCTTGC
CATCAACAGCCTGGTCTGCCTCTCGGTCGCCTTCATCCCCACCCTCTCCA
CCATCCTAGACCCCTCCTGGGGCCACCACCCCGCCTCGCTCACCACGGGC
GCGGCCTTCTTGCTCGTCGCCAGTCTCTTGCTTCTCTTCCTCCTGATGGC
AGCACTGCAAGCGGCACCACTCGCCGAAGCACCGGACGGTATCAATGAAA
GCGCCGAAACCCTGCTCTCGGAGATGCTGGGCCGACCAATCGCCTGCGGA
ACGGGGATCATACCCGGAAACATCCTGGCCTCGCCGGCGGACAGCCCACG
CTCAAGTCAGGAAATCGAGAAGAAGGACGACGTGGAGGATATGCTGATGC
CTAGGCGCGCGCCTCGTCTCTTTCAAGAGCCCTCTTGCCTCGCGCAAGGC
CGGGGAATCGACTCAAATTTGCTGCGGCGTTTGCAAGCCATCCGGGACGA
GTACGAGATCGGCAGCGCCAGCATCCTCCCCGTCATGGCTTTCTTCCTCA
CACTGTTGACCGCATCCCTACAATTCGCGGGAGAGACGAGCCCGTACACG
CCGGCCGCCTTTCTGCTCACCTTCTTCGTCTACACCGCCGAGCACCGGAT
TCTGCGGCCCCGCGCGGCCCGAAAGATTCGAAAAATCCAGAGGCAACTCC
AGCAACACCAGCAGGAGCAGCATGGATATCCACCGTTTCTGCCTGCGAAG
GTGTCTCCGTCCTCCAAATTGGAAACCGTACGTGAAGAGTCGCTTGTCTC
CTCTGTGGGAGAATCGGAGGAGGGGGCAGAGAGGCTCGTGGGAGTGATGG
AAGGGGGGGAGTACAAGGAGGAGGGCGACCGACACGAATCGCGAGCAGTG
TCGGGGGATCTAAATCGCGATAAATATGTCCACTTCAGAGATAGCGCACA
CATTTGATAGTCTCCCGGTCCCGGAACAGCTAAAGTGTACAGATAAATTG
GCCATGGGACAATTGCCACCCATCTCCGTGCCTAAATCAAATTCAAAATC
AAATGAAAAGTTAACCATCGCTAGAACATCGAG
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protein sequence of rna4024

>rna4024-protein ID=rna4024-protein|Name=rna4024|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MRGSSTFLVKTGDPSLGEQSYIIYNSSFKFNNDTIRCPGSQSNLARRPHS
PPNPSFNLPHDLSPFPGAYLTGMARGRSCLLLFSALISVSNFLHSHAKKS
ATAVIPLFILPSARDISPQTLITATRLQRRGPIDAPPEYGMQRRPFDGLL
YAFFRAKLVQQLGGSDTASKDFAGLIELIRKLNTHFPASGKVGTQKAAQN
ILRSLFPSWLPAAFAVMFSKPFPAFSARMNAIITGLTTYWLMGESEIIDV
DVDGGSVGVGQGLLVKRCRYLEEAGCASICVNTCKIPTQNFFCQDMGLPL
TMTPDYDDFSCTFAFGLTPPPVFDDEAMRVACFSQCPTAKAPTGELSNCH
QIEL
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mRNA from alignment at CM002462.1:650927..652451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4024 ID=rna4024|Name=rna4024|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at CM002462.1:650927..652451- (Nannochloropsis gaditana)
CCAAAAGGCCTGTACGGCTGTAGCCATGGCAAGTAAAAGGACGGCATGCG
CTCTCATCCTCGTCTGTGCCGTGCATGCGATGAAATTAAGAGAGGATGAG
AGGGTCAAGCACCTTTCTCGTGAAAACCGGCGACCCCTCCCTCGGCGAGC
AGAGTTACATTATTTATAATTCAAGCTTTAAATTTAACAATGACACCATC
AGATGCCCTGGCAGTCAGTCAAATTTAGCAAGGCGGCCACATTCACCGCC
TAATCCCTCCTTTAACCTCCCCCACGACCTGTCTCCTTTTCCCGGTGCTT
ATCTCACAGGAATGGCTCGGGGCAGGAGCTGCCTACTCCTCTTCAGTGCA
TTGATATCGGTGTCCAATTTTCTACACTCCCATGCCAAAAAGTCAGCTAC
TGCCGTTATTCCCCTCTTCATTCTTCCCTCCGCTCGGGACATCTCCCCTC
AAACCTTGATAACTGCCACGAGGCTGCAGCGCCGTGGCCCGATAGATGCC
CCCCCGGAGTACGGTATGCAGAGAAGACCTTTCGATGGATTACTTTATGC
TTTTTTCCGGGCGAAATTGGTGCAGCAGCTGGGTGGGTCGGATACGGCAA
GCAAGGATTTTGCTGGACTCATCGAATTGATTCGGAAACTGAATACACAC
TTCCCTGCCAGTGGCAAAGTTGGTACTCAGAAAGCGGCGCAAAATATTCT
ACGTTCTCTGTTCCCGTCTTGGCTCCCCGCTGCTTTCGCTGTCATGTTCA
GCAAGCCTTTCCCCGCGTTCTCTGCTCGCATGAATGCTATCATAACGGGA
CTGACCACCTATTGGCTGATGGGGGAAAGCGAAATCATTGATGTCGATGT
TGACGGCGGTAGCGTGGGTGTGGGTCAAGGCTTGCTCGTCAAACGCTGCC
GCTACCTAGAGGAGGCAGGGTGTGCAAGCATCTGTGTCAACACCTGCAAG
ATTCCTACTCAAAATTTCTTCTGTCAGGACATGGGTCTGCCCCTGACCAT
GACGCCAGACTACGACGACTTCAGTTGCACCTTTGCTTTCGGGCTTACCC
CGCCCCCTGTATTCGACGATGAGGCCATGCGAGTGGCGTGCTTTAGCCAG
TGTCCGACGGCCAAAGCCCCGACTGGTGAGTTGTCAAATTGCCATCAAAT
CGAGTTATGACAAAATATATGTCTCTAAGGCTCCTGTTTTCGTAGCAGGG
GTGGTTTGGGCTTCTGTGATGCTGCTTCAATAATTTGAAAAAGATGAGAG
GTTATGTTTGCCTCAAAGCCCTCTTCAACAGCGAGTGTCGAGAGAGATGT
CGGTCTCGATCTCAGAAGCTAGCAATTTGCCGCCGCTGACCGGATGCGCA
CAAACGAAGCATTCTGATGTAGCTGATACTTGCATTGATCAATTTGTGTA
TACAATAGTTTCCTACATACAAGAAATCAACGAACAAAAATACGATTTGT
TGATAGCACCACCATTTTGCTTAGATGGACGAGGTTCTTGTTCGCACTGT
TAAAAAGAAATATCGATCACGCCGC
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Coding sequence (CDS) from alignment at CM002462.1:650927..652451-

>rna4024 ID=rna4024|Name=rna4024|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002462.1:650927..652451- (Nannochloropsis gaditana)
ATGAGAGGGTCAAGCACCTTTCTCGTGAAAACCGGCGACCCCTCCCTCGG
CGAGCAGAGTTACATTATTTATAATTCAAGCTTTAAATTTAACAATGACA
CCATCAGATGCCCTGGCAGTCAGTCAAATTTAGCAAGGCGGCCACATTCA
CCGCCTAATCCCTCCTTTAACCTCCCCCACGACCTGTCTCCTTTTCCCGG
TGCTTATCTCACAGGAATGGCTCGGGGCAGGAGCTGCCTACTCCTCTTCA
GTGCATTGATATCGGTGTCCAATTTTCTACACTCCCATGCCAAAAAGTCA
GCTACTGCCGTTATTCCCCTCTTCATTCTTCCCTCCGCTCGGGACATCTC
CCCTCAAACCTTGATAACTGCCACGAGGCTGCAGCGCCGTGGCCCGATAG
ATGCCCCCCCGGAGTACGGTATGCAGAGAAGACCTTTCGATGGATTACTT
TATGCTTTTTTCCGGGCGAAATTGGTGCAGCAGCTGGGTGGGTCGGATAC
GGCAAGCAAGGATTTTGCTGGACTCATCGAATTGATTCGGAAACTGAATA
CACACTTCCCTGCCAGTGGCAAAGTTGGTACTCAGAAAGCGGCGCAAAAT
ATTCTACGTTCTCTGTTCCCGTCTTGGCTCCCCGCTGCTTTCGCTGTCAT
GTTCAGCAAGCCTTTCCCCGCGTTCTCTGCTCGCATGAATGCTATCATAA
CGGGACTGACCACCTATTGGCTGATGGGGGAAAGCGAAATCATTGATGTC
GATGTTGACGGCGGTAGCGTGGGTGTGGGTCAAGGCTTGCTCGTCAAACG
CTGCCGCTACCTAGAGGAGGCAGGGTGTGCAAGCATCTGTGTCAACACCT
GCAAGATTCCTACTCAAAATTTCTTCTGTCAGGACATGGGTCTGCCCCTG
ACCATGACGCCAGACTACGACGACTTCAGTTGCACCTTTGCTTTCGGGCT
TACCCCGCCCCCTGTATTCGACGATGAGGCCATGCGAGTGGCGTGCTTTA
GCCAGTGTCCGACGGCCAAAGCCCCGACTGGTGAGTTGTCAAATTGCCAT
CAAATCGAGTTATGA
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Synonyms
Publications