rna4022, rna4022 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4022
Unique Name	rna4022
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2197
Alignment location	CM002462.1:647721..650495 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g94.8229.mrna
Orig protein id	gnl\|cribi\|Naga_100001g94.8229
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:647721..650495 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g94	gene3869	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26718.1	cds4012	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4022	rna4022-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:647721..650495-
coding sequence from alignment at CM002462.1:647721..650495-

mRNA sequence

>rna4022 ID=rna4022|Name=rna4022|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp
TGTAGGTTTCGCCTGAGCCTCGTATACTTGCATCGAACGCGTCTTTGAGA
GGCAGGCTCCGATTTTGACAAGCCATCGGACACCAACCCTTACCGCGTGT
AATGGGCCTCTCCGTTTGTCAATCATGAACGAGCCACTACTTCAGAGGAG
TAATAGTGACTCCGCGCTGCCTACTTTGGGTAGCTGGGGCATGCAGAGTA
TCCTTGTCAGTGGGCGTATGGGAAGATTGCAAGATTCGGACAGGATCATG
GCATTCACGGACGCAATTCTAGCTATTATATGCACGTCTTGTGCAGTCCC
GCTCTGGTCAAATGGAACACGTAACTTCAACCCGGTGCGTTTGGTTCCTT
TTGTTACCACTTTCTTCATTTTGAGTCGGCTGTGGGAAATTCACTGCCAA
GATTTTTGCCGCTTGGAGCACGTGGATGAGAAACTGCCCCAAATTAATGT
GTTATGGATCGCCTCCATGACGCTGCTTCCCTTTCACTTTGTCATCCTCT
TCGTGCCCGCGACCGCCACGGGCCACCTCCTCTACCTCGGGCTCTGGGCT
TGCGTTCTCCTCCTGGTCGGGGTCGCTTCCCACTGGCTCTCCTCCGCCAC
CCAACGCCTTTCAGCTTTACGCCTGGGCGTTCAGGAAAAGAAAGGATGGC
AGCAGCGTGACCTGGCTCTGACGCTCGCCCTATTCCAGGTCGGGCTCGTC
ACAGCGGGGGCCTCGCTCCTCGCGCGGGTGGAGCACCTGGACATCTTGAC
GGACGACTACAAGAAAGCCTTTCGCCCAGGTCACATCAGGGTCGCAGCTG
TCCTTTTCGTCGTGGGTGTGCTGATTTACTGGCTGTGCCTCGCGCTTCGA
ATCAATTTTCGGATCCTGCAGATGTGGCTGGGGCCACGCAGCGCCGTGCT
TTTCAATGGGGCCGTCCCGCGGGTGCGGGTGGAGATTTTCTCGGACGGCG
TCTACGCAGCTGCAGCGACAGGGCTGATGATTGAGGTGTTGAGCGGGCTT
TTGCGCGCCGACGAGGGTGCCGAGGGGGGGGGCGGGCAGCACGGAGGCTC
GGTGTGGCCCAGCCTCGTCAACTACATCTATTGCTTCCACGTGGTGGCCG
TGCTTCACCGCTCGCATCAAAACATTGTCGCCAAGATTTCTGTCTTCAAC
GAGCGGCTCCTTGCCATCAACAGCCTGGTCTGCCTCTCGGTCGCCTTCAT
CCCCACCCTCTCCACCATCCTAGACCCCTCCTGGGGCCACCACCCCGCCT
CGCTCACCACGGGCGCGGCCTTCTTGCTCGTCGCCAGTCTCTTGCTTCTC
TTCCTCCTGATGGCAGCACTGCAAGCGGCACCACTCGCCGAAGCACCGGA
CGGTATCAATGAAAGCGCCGAAACCCTGCTCTCGGAGATGCTGGGCCGAC
CAATCGCCTGCGGAACGGGGATCATACCCGGAAACATCCTGGCCTCGCCG
GCGGACAGCCCACGCTCAAGTCAGGAAATCGAGAAGAAGGACGACGTGGA
GGATATGCTGATGCCTAGGCGCGCGCCTCGTCTCTTTCAAGAGCCCTCTT
GCCTCGCGCAAGGCCGGGGAATCGACTCAAATTTGCTGCGGCGTTTGCAA
GCCATCCGGGACGAGTACGAGATCGGCAGCGCCAGCATCCTCCCCGTCAT
GGCTTTCTTCCTCACACTGTTGACCGCATCCCTACAATTCGCGGGAGAGA
CGAGCCCGTACACGCCGGCCGCCTTTCTGCTCACCTTCTTCGTCTACACC
GCCGAGCACCGGATTCTGCGGCCCCGCGCGGCCCGAAAGATTCGAAAAAT
CCAGAGGCAACTCCAGCAACACCAGCAGGAGCAGCATGGATATCCACCGT
TTCTGCCTGCGAAGGTGTCTCCGTCCTCCAAATTGGAAACCGTACGTGAA
GAGTCGCTTGTCTCCTCTGTGGGAGAATCGGAGGAGGGGGCAGAGAGGCT
CGTGGGAGTGATGGAAGGGGGGGAGTACAAGGAGGAGGGCGACCGACACG
AATCGCGAGCAGTGTCGGGGGATCTAAATCGCGATAAATATGTCCACTTC
AGAGATAGCGCACACATTTGATAGTCTCCCGGTCCCGGAACAGCTAAAGT
GTACAGATAAATTGGCCATGGGACAATTGCCACCCATCTCCGTGCCTAAA
TCAAATTCAAAATCAAATGAAAAGTTAACCATCGCTAGAACATCGAG

protein sequence of rna4022

>rna4022-protein ID=rna4022-protein|Name=rna4022|organism=Nannochloropsis gaditana|type=polypeptide|length=534bp
MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSA
LRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKK
AFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAV
PRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSL
VNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLST
ILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINES
AETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMP
RRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLT
LLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQ
QHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVME
GGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI

mRNA from alignment at CM002462.1:647721..650495-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4022 ID=rna4022|Name=rna4022|organism=Nannochloropsis gaditana|type=mRNA|length=2775bp|location=Sequence derived from alignment at CM002462.1:647721..650495- (Nannochloropsis gaditana)
GCCTGAGCCTCGTATACTTGCATCGAACGCGTCTTTGAGAGGCAGGCTCC
GATTTTGACAAGCCATCGGACACCAACCCTTACCGCGTGTAATGGGCCTC
TCCGTTTGTCAATCATGAACGAGCCACTACTTCAGAGGAGTAATAGTGAC
TCCGCGCTGCCTACTTTGGGTAGCTGGGGCATGCAGAGTATCCTTGTCAG
TGGGCGTATGGGAAGATTGCAAGATTCGGACAGGTGAGGACACATGGGGA
TGCAAACAAAAGATTGGATGAGGGCGCGAGGCTTGTGTATGCATGTGTAA
CTTTCGAGATGGGATAGATTGGAGCTTTCATGTACCCGAAATGCTAATTC
CGCGAGCGTAAACCTCCTATTTGGCGTTGACTACGCCATCTTTGCTAGGA
TCATGGCATTCACGGACGCAATTCTAGCTATTATATGCACGTCTTGTGCA
GTCCCGCTCTGGTCAAATGGAACACGTAACTTCAACCCGGTGCGTTTGGT
TCCTTTTGTTACCACTTTCTTCATTTTGAGTCGGCTGTGGTGAGTAGCGT
CGGGGGTTGACTGGGTGTGAAGGAACCACTCTTTTTTTTTAGCTGAGCAA
GTGCCGCCTAAGAGATTCGTTATGGTCTGATGAGGAGTTGCAGGTCTTCT
TCACAACATCAATGCTCAGTTTTCAACGATCGAATGATGACGCGAATGTT
GAGCATATCTTATTAAGTTATGATGCCTGATATGCATATATGGCCCTTTG
CCTCTCTGTAAGGCCTTGATCGTCTTTGTTGTGTTCCCCGATTCCTACTG
ACTGAAGGGTGTGGGCATAGGCAACCAACCCGCTTTGCCGTGCTCCACGT
ATCGATGTCATTATGTTTTGTGTTTTTGGTGTCCATTCGCCGTAAGCTCT
CTCGCTCGACTCCAATTCTTCTCTTTACTCCTGGTCCTCTTGGTACATGA
CTTGTGTGGTAGGGAAATTCACTGCCAAGATTTTTGCCGCTTGGAGCACG
TGGATGAGAAACTGCCCCAAATTAATGTGTTATGGATCGCCTCCATGACG
CTGCTTCCCTTTCACTTTGTCATCCTCTTCGTGCCCGCGACCGCCACGGG
CCACCTCCTCTACCTCGGGCTCTGGGCTTGCGTTCTCCTCCTGGTCGGGG
TCGCTTCCCACTGGCTCTCCTCCGCCACCCAACGCCTTTCAGCTTTACGC
CTGGGCGTTCAGGAAAAGAAAGGATGGCAGCAGCGTGACCTGGCTCTGAC
GCTCGCCCTATTCCAGGTCGGGCTCGTCACAGCGGGGGCCTCGCTCCTCG
CGCGGGTGGAGCACCTGGACATCTTGACGGACGACTACAAGAAAGCCTTT
CGCCCAGGTCACATCAGGGTCGCAGCTGTCCTTTTCGTCGTGGGTGTGCT
GATTTACTGGCTGTGCCTCGCGCTTCGAATCAATTTTCGGATCCTGCAGA
TGTGGCTGGGGCCACGCAGCGCCGTGCTTTTCAATGGGGCCGTCCCGCGG
GTGCGGGTGGAGATTTTCTCGGACGGCGTCTACGCAGCTGCAGCGACAGG
GCTGATGATTGAGGTGTTGAGCGGGCTTTTGCGCGCCGACGAGGGTGCCG
AGGGGGGGGGCGGGCAGCACGGAGGCTCGGTGTGGCCCAGCCTCGTCAAC
TACATCTATTGCTTCCACGTGGTGGCCGTGCTTCACCGCTCGCATCAAAA
CATTGTCGCCAAGATTTCTGTCTTCAACGAGCGGCTCCTTGCCATCAACA
GCCTGGTCTGCCTCTCGGTCGCCTTCATCCCCACCCTCTCCACCATCCTA
GACCCCTCCTGGGGCCACCACCCCGCCTCGCTCACCACGGGCGCGGCCTT
CTTGCTCGTCGCCAGTCTCTTGCTTCTCTTCCTCCTGATGGCAGCACTGC
AAGCGGCACCACTCGCCGAAGCACCGGACGGTATCAATGAAAGCGCCGAA
ACCCTGCTCTCGGAGATGCTGGGCCGACCAATCGCCTGCGGAACGGGGAT
CATACCCGGAAACATCCTGGCCTCGCCGGCGGACAGCCCACGCTCAAGTC
AGGAAATCGAGAAGAAGGACGACGTGGAGGATATGCTGATGCCTAGGCGC
GCGCCTCGTCTCTTTCAAGAGCCCTCTTGCCTCGCGCAAGGCCGGGGAAT
CGACTCAAATTTGCTGCGGCGTTTGCAAGCCATCCGGGACGAGTACGAGA
TCGGCAGCGCCAGCATCCTCCCCGTCATGGCTTTCTTCCTCACACTGTTG
ACCGCATCCCTACAATTCGCGGGAGAGACGAGCCCGTACACGCCGGCCGC
CTTTCTGCTCACCTTCTTCGTCTACACCGCCGAGCACCGGATTCTGCGGC
CCCGCGCGGCCCGAAAGATTCGAAAAATCCAGAGGCAACTCCAGCAACAC
CAGCAGGAGCAGCATGGATATCCACCGTTTCTGCCTGCGAAGGTGTCTCC
GTCCTCCAAATTGGAAACCGTACGTGAAGAGTCGCTTGTCTCCTCTGTGG
GAGAATCGGAGGAGGGGGCAGAGAGGCTCGTGGGAGTGATGGAAGGGGGG
GAGTACAAGGAGGAGGGCGACCGACACGAATCGCGAGCAGTGTCGGGGGA
TCTAAATCGCGATAAATATGTCCACTTCAGAGATAGCGCACACATTTGAT
AGTCTCCCGGTCCCGGAACAGCTAAAGTGTACAGATAAATTGGCCATGGG
ACAATTGCCACCCATCTCCGTGCCTAAATCAAATTCAAAATCAAATGAAA
AGTTAACCATCGCTAGAACATCGAG

Coding sequence (CDS) from alignment at CM002462.1:647721..650495-

>rna4022 ID=rna4022|Name=rna4022|organism=Nannochloropsis gaditana|type=CDS|length=1605bp|location=Sequence derived from alignment at CM002462.1:647721..650495- (Nannochloropsis gaditana)
ATGACGCTGCTTCCCTTTCACTTTGTCATCCTCTTCGTGCCCGCGACCGC
CACGGGCCACCTCCTCTACCTCGGGCTCTGGGCTTGCGTTCTCCTCCTGG
TCGGGGTCGCTTCCCACTGGCTCTCCTCCGCCACCCAACGCCTTTCAGCT
TTACGCCTGGGCGTTCAGGAAAAGAAAGGATGGCAGCAGCGTGACCTGGC
TCTGACGCTCGCCCTATTCCAGGTCGGGCTCGTCACAGCGGGGGCCTCGC
TCCTCGCGCGGGTGGAGCACCTGGACATCTTGACGGACGACTACAAGAAA
GCCTTTCGCCCAGGTCACATCAGGGTCGCAGCTGTCCTTTTCGTCGTGGG
TGTGCTGATTTACTGGCTGTGCCTCGCGCTTCGAATCAATTTTCGGATCC
TGCAGATGTGGCTGGGGCCACGCAGCGCCGTGCTTTTCAATGGGGCCGTC
CCGCGGGTGCGGGTGGAGATTTTCTCGGACGGCGTCTACGCAGCTGCAGC
GACAGGGCTGATGATTGAGGTGTTGAGCGGGCTTTTGCGCGCCGACGAGG
GTGCCGAGGGGGGGGGCGGGCAGCACGGAGGCTCGGTGTGGCCCAGCCTC
GTCAACTACATCTATTGCTTCCACGTGGTGGCCGTGCTTCACCGCTCGCA
TCAAAACATTGTCGCCAAGATTTCTGTCTTCAACGAGCGGCTCCTTGCCA
TCAACAGCCTGGTCTGCCTCTCGGTCGCCTTCATCCCCACCCTCTCCACC
ATCCTAGACCCCTCCTGGGGCCACCACCCCGCCTCGCTCACCACGGGCGC
GGCCTTCTTGCTCGTCGCCAGTCTCTTGCTTCTCTTCCTCCTGATGGCAG
CACTGCAAGCGGCACCACTCGCCGAAGCACCGGACGGTATCAATGAAAGC
GCCGAAACCCTGCTCTCGGAGATGCTGGGCCGACCAATCGCCTGCGGAAC
GGGGATCATACCCGGAAACATCCTGGCCTCGCCGGCGGACAGCCCACGCT
CAAGTCAGGAAATCGAGAAGAAGGACGACGTGGAGGATATGCTGATGCCT
AGGCGCGCGCCTCGTCTCTTTCAAGAGCCCTCTTGCCTCGCGCAAGGCCG
GGGAATCGACTCAAATTTGCTGCGGCGTTTGCAAGCCATCCGGGACGAGT
ACGAGATCGGCAGCGCCAGCATCCTCCCCGTCATGGCTTTCTTCCTCACA
CTGTTGACCGCATCCCTACAATTCGCGGGAGAGACGAGCCCGTACACGCC
GGCCGCCTTTCTGCTCACCTTCTTCGTCTACACCGCCGAGCACCGGATTC
TGCGGCCCCGCGCGGCCCGAAAGATTCGAAAAATCCAGAGGCAACTCCAG
CAACACCAGCAGGAGCAGCATGGATATCCACCGTTTCTGCCTGCGAAGGT
GTCTCCGTCCTCCAAATTGGAAACCGTACGTGAAGAGTCGCTTGTCTCCT
CTGTGGGAGAATCGGAGGAGGGGGCAGAGAGGCTCGTGGGAGTGATGGAA
GGGGGGGAGTACAAGGAGGAGGGCGACCGACACGAATCGCGAGCAGTGTC
GGGGGATCTAAATCGCGATAAATATGTCCACTTCAGAGATAGCGCACACA
TTTGA

Synonyms

Publications