EWM26718.1, cds4012 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26718.1
Unique Name	cds4012
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:647847..649451 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26718.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g94.8229.mrna
Gbkey	CDS
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:647847..649451 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0006810	transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR010617	DUF1211_TMEM175

Homology

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BLAST of EWM26718.1 vs. NCBI_GenBank
Match: gi|585108806|gb|EWM26718.1| (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 1082.4 bits (2798), Expect = 0.000e+0
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 0

Query:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 534
            MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI
Sbjct:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 534

[Close]

BLAST of EWM26718.1 vs. NCBI_GenBank
Match: gi|585108804|gb|EWM26716.1| (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 1080.86 bits (2794), Expect = 0.000e+0
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 0

Query:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 534
            MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI
Sbjct:   36 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 569

[Close]

BLAST of EWM26718.1 vs. NCBI_GenBank
Match: gi|585108805|gb|EWM26717.1| (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 1079.7 bits (2791), Expect = 0.000e+0
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 0

Query:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 534
            MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI
Sbjct:  115 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHGGSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLLFLLMAALQAAPLAEAPDGINESAETLLSEMLGRPIACGTGIIPGNILASPADSPRSSQEIEKKDDVEDMLMPRRAPRLFQEPSCLAQGRGIDSNLLRRLQAIRDEYEIGSASILPVMAFFLTLLTASLQFAGETSPYTPAAFLLTFFVYTAEHRILRPRAARKIRKIQRQLQQHQQEQHGYPPFLPAKVSPSSKLETVREESLVSSVGESEEGAERLVGVMEGGEYKEEGDRHESRAVSGDLNRDKYVHFRDSAHI 648

[Close]

BLAST of EWM26718.1 vs. NCBI_GenBank
Match: gi|740035628|ref|WP_037885281.1| (DUF1211 domain-containing membrane protein [Streptomyces sp. NRRL S-646])

HSP 1 Score: 60.8474 bits (146), Expect = 5.083e-7
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 0

Query:  154 RVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQHG-GSVWPSLVNYIYCFHVVAVLHRSHQNIVAKISVFNERLLAINSLVCLSVAFIPTLSTILDPSWGHHPASLTTGAAFLLVASLLLL 278
            RVE FSDGV+A A T L++E+     +  E  E GG  H  G+ WPS   Y+  F V+ ++  +H  + + ++  +  L+ +N LV + VA +P  + +L        AS    A + LV  L+ L
Sbjct:    6 RVEAFSDGVFAIAITLLILEI-----KVPEVGEHGGLWHALGAQWPSYAAYVVSFLVIGIMWINHHQLFSYVARVDRTLMFLNLLVLMVVAAVPWPTAMLAEYLREDAASHVAAAVYSLVMVLMAL 126

The following BLAST results are available for this feature:

BLAST of EWM26718.1 vs. NCBI_GenBank

BLAST of EWM26718.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|585108806\|gb\|EWM26718.1\|	0.000e+0	100.00	hypothetical protein Naga_100001g94 [Nannochlorops...	[more]
gi\|585108804\|gb\|EWM26716.1\|	0.000e+0	100.00	hypothetical protein Naga_100001g94 [Nannochlorops...	[more]
gi\|585108805\|gb\|EWM26717.1\|	0.000e+0	100.00	hypothetical protein Naga_100001g94 [Nannochlorops...	[more]
gi\|740035628\|ref\|WP_037885281.1\|	5.083e-7	32.54	DUF1211 domain-containing membrane protein [Strept...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4022	rna4022	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications