rna4013, rna4013 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4013
Unique Name	rna4013
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2574
Alignment location	CM002462.1:628646..630216 -

Link to JBrowse

Properties


Property Name	Value
Product	Cobalamin (vitamin B12) biosynthesis CobW
Orig transcript id	gnl\|cribi\|Naga_100001g103.8185.mrna
Orig protein id	gnl\|cribi\|Naga_100001g103.8185
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:628646..630216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g103	gene3861	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4013	rna4013-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26674.1	cds4003	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:628646..630216-
coding sequence from alignment at CM002462.1:628646..630216-

mRNA sequence

>rna4013 ID=rna4013|Name=rna4013|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp
GCACGCTGTTACCCTATCTTATTTGCGCGAGCACCGCTGTCCCTTTCCGG
ACAGGTATATATGAACGAGGCGAGAGTGCCAATGTTTGTTGAACCTTCGA
CGTGCGGGCGTTACGCCTTACATTTCTTATCCGGTTATGCTCTTCTGTAA
GGTGCGGAGCCAAGTCTCGCTCCGCGTGTGCCAAAGCAAAGTGCATCACG
CGATCACGGCCACGACTCTGTGATCTCTTTTTCCTTTGTGTTCAAAGTTG
AGACTTACCTCCATTGCTCCCTCATACCATTTTGCTACAGGTAACCCCAT
CATTCGCTTTCCCTAAGGAGGCGATTGAAGAGCCACTTGAAGCTGTTGAG
GCAGTCACCGAAGAAGCTGAATCCGTCCAAGGCCAGCTCTTGAGAACGAA
ATGGCACGCCGTGGATTGTCGCATAACTTGCCAAACTACGTCAAGGGCGG
GTGCACCGTCGGGGCATGCACATATCAAAGCCAAGCGGCGCGTACCTTTC
ACGACGACGATGATGACGACAGCGGGGGTGTTGGCCGTGACTCAACCGTG
TTGACAACAGACACCACAACGGGGGAGCGGGCGGAGGAAGTGCGTGTCCA
GAGCAACGCCCTCAAAGACGCAAATCTGTCACCCGTTGCGACACCGGCCC
CGCATCTCTCAAGGGACTGCACCATCAGTGCCAGGGAGGTTGAAGAAGCG
TCCCGCATTCTTTTCGCGCCAGAGGGCGCGACCTCTCACTTTCATCACCA
TCGGGCGGAGGCTGCATATCAAGACTCAGAGGCGAATAAATTACAGAAGC
GGGTCTCAGGTGCCGCCAAGACTAGTGAAAGAGCCCCTCAAGTAGAGGCA
GGGATCGATGAGGCGGTGGAGGACAAGCAGCGCGTCAATCTTGCTAAAGG
TATGGCTCCGACTCAGTCGTTGCCGCCCATGTTGCGAACCCGGTCGCCAG
TTTCTCGAAGTTTGGCACCCTTGCCATCGACCTTGCTGGCACGCTTGCAT
CCGCAACCGGAAGTCCACGCCGAGATCTTGCGTTTTGGGGAGGCTCTTGC
TTCTAATCCAAGGATTCAAAACGCCATCGTGGAGGAGCTAGACATGCACT
ACCCTCCTTCCCGTAAGGCTTTCGAGCGGGAAGGTACAGGTGAGAACGAC
GAAGGAGCAGCGGAAAGGTCTTTGGCGCAGATGGAGTCAGCAGTGCGGCG
GTTGCTCGGGCGGACTTCGGCCGAGGATCGGGCGGAGGCAGCAACACAGG
AAGGAGAGGAAGGGAATGAAGAGAGACGAGGATTTGGAAGCGCTGGCGGC
GGTTACAGTGGCCGGAGCAGTTTTTTGACGGATTCCTTTGAAGTGCTTGG
AGCTATGAGTGCCGAGTGGTCGTCAGCGAGCTCCAAGAACGGAGGAGCAG
AGGAGAAGGTGGGGAATGAACGCGAGGATATGGCGGAGAACCTTCCCTCT
AATTCCTTCGTAAGTGTGGGCCGCTACATGCGGCGAAAGGACAGCTTGGC
AGGGGAGGTCTCGGACGAGGTGCTGGACGAGCTGCTTCGCTCTGAAGACG
ACGACGACGTGATCGCCCAGAAGCTCTTCGCCGAGACGCCGGATGACCAA
GTGCGGCGCTTCCTTCGCAACCTCGACCTGGAGTGTGTCATCTGTCACGA
GTACATGGTGGAGGCGGCGGCAGTTGATTGTGGAGAAGGGCACACTTTCT
GCGGAGAATGCATCGAAAGATGGCTGGAACTCCCTGTGGCGGGCGGCTCT
CGATGCCCTACCTGCCAGAAACCTGTCCACTCAACCATTCCCATGCGACA
ATACGACGCCATGATCGAAAAGTATGTTCGCGCTTCAAACCTCTGGGACG
AACAATGCTCTTTCTACCGTCGTCGCACCCTGGCGCACATGCGACGTGAA
ATGGAGCGACAAGACAGAGAGGAGGAGGAAACTGCGACGGCTGCGACTCA
GGGCCCTTTTGCTGGCATTGGAAACCTGTTTGGGTTGGGCACGCGCGCGA
ACGCCCGCCGCCAGCGTCGTCGCAGCCGACGGGCTACTGCTGCCGCCACG
CGTGCCGCCGCTGGCGCGTCAAGGACCACGGGAGACGGCGGGGCGGGGGA
GGCAGCGCAGCCTTGGTGGAAGAGCGAATTGCTGAGCACGGCCTTATCGG
TGGCCACGATGCTAGTGCTCCTGGTTTTATTCAAACGCGGGTTCAAGACT
CGATAGACGTAGTAGGGTGGACCGTCGCGTTGAGAAAGCCGAGTTGTGGG
AAGAAGAGCACTCGAAGAGTGTCCTGGCCGTGGCGTCGACGTGGAGAAGC
GAAAGTATTAAACGGGAGGAGCGATACCCTCGTGTCTCGGGTGTTGTGTT
GCTGTACATAGGCTAGGAGGCGTGCGGACCAAATTATAGAGGCCCGGGAG
GAGACGAGCGAGCCCACAAGACTCTTGAGAATGGGAGGGCGTGATAATCG
AAGGCCTCCATTTCCCCGCTCAATATTGGCGAGCAGGAGGGGAAAATGAA
AACGAACAGATGTTAAAGAAATGCAATACATGCCATAGGATTCACCCACA
AATAGGACGCACAAGCTTATTTTC

protein sequence of rna4013

>rna4013-protein ID=rna4013-protein|Name=rna4013|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MTSSQDDLLTEQGEDDEEPPKLVLLSSQVVSQPSSRPGEGDADLSETKSG
SSNPIPIDKIVPVTIITGFLGSGKTTLLNHILTQPHGKRIAVIENEFGKG
LGIESAIAKDGADGSSLEGFFELANGCICCSVKNDLLATLEVLVQRKSQF
DYVIIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKYISRHIHR
GGQEGQTFQGDSHLERVKNRGAERVTSDVSNICENLRCPVASEEVYYREE
AFRQICVADRIVLNKTDLVPEEDTISLEDELRGLNGMARIQRTVYSHVDL
DFVLGLECYSGKTKEDPLPFLSCGERNGDGERHSHGGVKEVTTLAIVEPV
EVDGEAVKRWLADLLWRDDPSDGKEGEREDVGRDEGIQDSIRESRCQRQQ
IYRMKGTLSVAGSDMVHILQAVHETFELEASQTPGGGGAARGCSGGRG

mRNA from alignment at CM002462.1:628646..630216-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4013 ID=rna4013|Name=rna4013|organism=Nannochloropsis gaditana|type=mRNA|length=1571bp|location=Sequence derived from alignment at CM002462.1:628646..630216- (Nannochloropsis gaditana)
TTTCACAGATGACAAGCTCGCAAGATGATCTCCTGACCGAGCAAGGCGAG
GATGATGAGGAACCTCCTAAGCTGGTTCTTTTGTCCTCTCAAGTCGTCTC
GCAGCCTTCTTCCCGGCCGGGGGAAGGCGATGCGGATCTCTCTGAAACCA
AAAGCGGCAGTTCCAATCCAATCCCAATTGACAAGATTGTCCCTGTGACC
ATAATCACTGGGTTTCTCGGTTCAGGTATGGTGTGAGTTGGCGGAAAGTA
AGCGCTAACTAGCGAGCTCACTCAGGCCCAACCTCCCCACCCTCTCTGCA
CAGGGAAGACGACACTGCTGAATCATATACTAACTCAGCCGCACGGAAAA
CGGATTGCTGTGATTGAGAATGAGTTTGGTAAAGGCTTAGGTATTGAAAG
TGCCATTGCCAAGGATGGGGCCGATGGAAGCAGTTTGGAAGGTTTTTTTG
AGCTTGCAAATGGATGCATCTGCTGCTCTGTCAAAAACGATCTCCTAGCC
ACTTTAGAGGTCCTGGTGCAGCGCAAATCTCAATTTGATTACGTTATAAT
AGAGACAAGCGGTCTAGCAGATCCTGGTCCCGTCGCAAGCTGTTTGTGGG
TAGACGAGGAGTTGGAGAGCCAGCTGCGTCTGGACGGCATCGTTACTGTT
GTAGACGCCAAGTACATCTCCCGACACATCCATAGAGGGGGGCAGGAAGG
CCAGACTTTTCAAGGGGATAGCCATTTAGAGAGAGTGAAAAATAGAGGGG
CTGAACGGGTGACCTCTGATGTCTCGAACATTTGTGAAAATCTACGTTGC
CCCGTTGCGAGCGAGGAAGTCTATTACCGAGAAGAGGCGTTTCGACAGAT
CTGTGTGGCGGACCGCATAGTGCTCAATAAAACCGACTTGGTGCCCGAAG
AAGACACGATCTCCCTGGAGGACGAGTTGCGGGGTCTAAATGGAATGGCA
CGCATCCAACGCACGGTATATTCTCATGTGGACCTTGACTTCGTGCTCGG
CCTGGAATGTTACAGCGGGAAGACGAAGGAGGATCCGCTGCCATTTTTGT
CTTGCGGTGAGAGAAACGGCGATGGAGAGCGACACAGCCACGGTGGCGTG
AAAGAGGTGACAACGCTGGCGATAGTGGAGCCGGTGGAGGTGGACGGAGA
GGCCGTGAAGCGCTGGTTGGCAGACTTGCTGTGGCGCGACGACCCGTCAG
ACGGAAAGGAGGGGGAAAGAGAAGACGTGGGGCGGGACGAGGGCATCCAA
GATTCGATCCGTGAGTCGAGATGTCAGAGGCAGCAGATCTATCGTATGAA
AGGCACCCTGTCCGTGGCGGGCTCCGACATGGTCCACATCCTGCAGGCAG
TGCACGAGACCTTCGAGCTCGAGGCCAGCCAGACGCCTGGGGGGGGGGGG
GCAGCGAGAGGCTGCTCGGGAGGGAGGGGCTGAATGTCGGCTGGTCATCA
TCGGCAAGGCGCTCGACGAGGCGTGTTTGAGGGCAGGCTTCTTGGCTACG
GTCAGTTCCTAGCATGCGGAGCTAAGCTGAAGTTAAGGAAAATAAGCTTG
TGCGTCCTATTTGTGGGTGAA

Coding sequence (CDS) from alignment at CM002462.1:628646..630216-

>rna4013 ID=rna4013|Name=rna4013|organism=Nannochloropsis gaditana|type=CDS|length=2694bp|location=Sequence derived from alignment at CM002462.1:628646..630216- (Nannochloropsis gaditana)
GGAAGACGACACTGCTGAATCATATACTAACTCAGCCGCACGGAAAACGG
ATTGCTGTGATTGAGAATGAGTTTGGTAAAGGCTTAGGTATTGAAAGTGC
CATTGCCAAGGATGGGGCCGATGGAAGCAGTTTGGAAGGTTTTTTTGAGC
TTGCAAATGGATGCATCTGCTGCTCTGTCAAAAACGATCTCCTAGCCACT
TTAGAGGTCCTGGTGCAGCGCAAATCTCAATTTGATTACGTTATAATAGA
GACAAGCGGTCTAGCAGATCCTGGTCCCGTCGCAAGCTGTTTGTGGGTAG
ACGAGGAGTTGGAGAGCCAGCTGCGTCTGGACGGCATCGTTACTGTTGTA
GACGCCAAGTACATCTCCCGACACATCCATAGAGGGGGGCAGGAAGGCCA
GACTTTTCAAGGGGATAGCCATTTAGAGAGAGTGAAAAATAGAGGGGCTG
AACGGGTGACCTCTGATGTCTCGAACATTTGTGAAAATCTACGTTGCCCC
GTTGCGAGCGAGGAAGTCTATTACCGAGAAGAGGCGTTTCGACAGATCTG
TGTGGCGGACCGCATAGTGCTCAATAAAACCGACTTGGTGCCCGAAGAAG
ACACGATCTCCCTGGAGGACGAGTTGCGGGGTCTAAATGGAATGGCACGC
ATCCAACGCACGGTATATTCTCATGTGGACCTTGACTTCGTGCTCGGCCT
GGAATGTTACAGCGGGAAGACGAAGGAGGATCCGCTGCCATTTTTGTCTT
GCGGTGAGAGAAACGGCGATGGAGAGCGACACAGCCACGGTGGCGTGAAA
GAGGTGACAACGCTGGCGATAGTGGAGCCGGTGGAGGTGGACGGAGAGGC
CGTGAAGCGCTGGTTGGCAGACTTGCTGTGGCGCGACGACCCGTCAGACG
GAAAGGAGGGGGAAAGAGAAGACGTGGGGCGGGACGAGGGCATCCAAGAT
TCGATCCGTGAGTCGAGATGTCAGAGGCAGCAGATCTATCGTATGAAAGG
CACCCTGTCCGTGGCGGGCTCCGACATGGTCCACATCCTGCAGGCAGTGC
ACGAGACCTTCGAGCTCGAGGCCAGCCAGACGCCTGGGGGGGGGGGGGCA
GCGAGAGGCTGCTCGGGAGGGAGGGGCTGAATGACAAGCTCGCAAGATGA
TCTCCTGACCGAGCAAGGCGAGGATGATGAGGAACCTCCTAAGCTGGTTC
TTTTGTCCTCTCAAGTCGTCTCGCAGCCTTCTTCCCGGCCGGGGGAAGGC
GATGCGGATCTCTCTGAAACCAAAAGCGGCAGTTCCAATCCAATCCCAAT
TGACAAGATTGTCCCTGTGACCATAATCACTGGGTTTCTCGGTTCAGGGA
AGACGACACTGCTGAATCATATACTAACTCAGCCGCACGGAAAACGGATT
GCTGTGATTGAGAATGAGTTTGGTAAAGGCTTAGGTATTGAAAGTGCCAT
TGCCAAGGATGGGGCCGATGGAAGCAGTTTGGAAGGTTTTTTTGAGCTTG
CAAATGGATGCATCTGCTGCTCTGTCAAAAACGATCTCCTAGCCACTTTA
GAGGTCCTGGTGCAGCGCAAATCTCAATTTGATTACGTTATAATAGAGAC
AAGCGGTCTAGCAGATCCTGGTCCCGTCGCAAGCTGTTTGTGGGTAGACG
AGGAGTTGGAGAGCCAGCTGCGTCTGGACGGCATCGTTACTGTTGTAGAC
GCCAAGTACATCTCCCGACACATCCATAGAGGGGGGCAGGAAGGCCAGAC
TTTTCAAGGGGATAGCCATTTAGAGAGAGTGAAAAATAGAGGGGCTGAAC
GGGTGACCTCTGATGTCTCGAACATTTGTGAAAATCTACGTTGCCCCGTT
GCGAGCGAGGAAGTCTATTACCGAGAAGAGGCGTTTCGACAGATCTGTGT
GGCGGACCGCATAGTGCTCAATAAAACCGACTTGGTGCCCGAAGAAGACA
CGATCTCCCTGGAGGACGAGTTGCGGGGTCTAAATGGAATGGCACGCATC
CAACGCACGGTATATTCTCATGTGGACCTTGACTTCGTGCTCGGCCTGGA
ATGTTACAGCGGGAAGACGAAGGAGGATCCGCTGCCATTTTTGTCTTGCG
GTGAGAGAAACGGCGATGGAGAGCGACACAGCCACGGTGGCGTGAAAGAG
GTGACAACGCTGGCGATAGTGGAGCCGGTGGAGGTGGACGGAGAGGCCGT
GAAGCGCTGGTTGGCAGACTTGCTGTGGCGCGACGACCCGTCAGACGGAA
AGGAGGGGGAAAGAGAAGACGTGGGGCGGGACGAGGGCATCCAAGATTCG
ATCCGTGAGTCGAGATGTCAGAGGCAGCAGATCTATCGTATGAAAGGCAC
CCTGTCCGTGGCGGGCTCCGACATGGTCCACATCCTGCAGGCAGTGCACG
AGACCTTCGAGCTCGAGGCCAGCCAGACGCCTGGGGGGGGGGGGGCAGCG
AGAGGCTGCTCGGGAGGGAGGGGCTGAATGACAAGCTCGCAAGATGATCT
CCTGACCGAGCAAGGCGAGGATGATGAGGAACCTCCTAAGCTGGTTCTTT
TGTCCTCTCAAGTCGTCTCGCAGCCTTCTTCCCGGCCGGGGGAAGGCGAT
GCGGATCTCTCTGAAACCAAAAGCGGCAGTTCCAATCCAATCCCAATTGA
CAAGATTGTCCCTGTGACCATAATCACTGGGTTTCTCGGTTCAG

Synonyms

Publications