rna4012, rna4012 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4012
Unique Name	rna4012
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	498
Alignment location	CM002462.1:626106..628679 +

Link to JBrowse

Properties


Property Name	Value
Product	e3 ubiquitin-protein ligase rnf8
Orig transcript id	gnl\|cribi\|Naga_100001g104.8253.mrna
Orig protein id	gnl\|cribi\|Naga_100001g104.8253
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:626106..628679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g104	gene3860	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4012	rna4012-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26742.1	cds4002	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:626106..628679+
coding sequence from alignment at CM002462.1:626106..628679+

mRNA sequence

>rna4012 ID=rna4012|Name=rna4012|organism=Nannochloropsis gaditana|type=mRNA|length=498bp
ATGATTAAATCTTGGGAGCGACCCACTAATATTGACGCATCGACAGTTAC
CTGTAATCCTTCAATGCTATTGCGTAATTTCCCATCTGACAAAAACATGC
ACCACGGCGAGCGTACAACTGTAAGTATATACCGACTGACGTATCGGAAT
CTTGGCGTTCACTCGATTGTAGAAGCTTTAAAGCCTCTGTGCAGTCCGCG
ATTTCCAAGGAGCAGGTGGTGCTGTCGGTGTCGAGAGTCACAGCACAAAG
CCGTACCAAAAGGGGTCTCTTTCGCTCACCGAACGCATATCATCATATTT
GGGCTCCTCGTTATGATTTCGCGCCTCAAGCTTTTGGTGGACGTTTTCAT
TCCATGCTGGCTTAAATTTTTTAATCCACAGATCCTCATCAAGTTTCTTG
GATTCCCGCAAAGGGGTCGGGAACATTCGCGGTGTGAATGTCACGTTTAT
GACTTTGCGTCCACTTTCGGAACGCACGGCAGGCGCCACGGGCACTGA

protein sequence of rna4012

>rna4012-protein ID=rna4012-protein|Name=rna4012|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTV
LTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEA
SRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEA
GIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLH
PQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGEND
EGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGG
GYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPS
NSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQ
VRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGS
RCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRRE
MERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAAT
RAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKT
R

mRNA from alignment at CM002462.1:626106..628679+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4012 ID=rna4012|Name=rna4012|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp|location=Sequence derived from alignment at CM002462.1:626106..628679+ (Nannochloropsis gaditana)
GCACGCTGTTACCCTATCTTATTTGCGCGAGCACCGCTGTCCCTTTCCGG
ACAGGTATATATGAACGAGGCGAGAGTGCCAATGTTTGTTGAACCTTCGA
CGTGCGGGCGTTACGCCTTACATTTCTTATCCGGTTATGCTCTTCTGTAA
GGTGCGGAGCCAAGTCTCGCTCCGCGTGTGCCAAAGCAAAGTGCATCACG
CGATCACGGCCACGACTCTGTgatctctttttcctttgtgTTCAAAGTTG
AGACTTACCTCCATTGCTCCCTCATACCATTTTGCTACAGGTAACCCCAT
CATTCGCTTTCCCTAAGGAGGCGATTGAAGAGCCACTTGAAGCTGTTGAG
GCAGTCACCGAAGAAGCTGAATCCGTCCAAGGCCAGCTCTTGAGAACGAA
ATGGCACGCCGTGGATTGTCGCATAACTTGCCAAACTACGTCAAGGGCGG
GTGCACCGTCGGGGCATGCACATATCAAAGCCAAGCGGCGCGTACCTTTc
acgacgacgatgatgacGACAGCGGGGGTGTTGGCCGTGACTCAACCGTG
TTGACAACAGACACCACAACGGgggagcgggcggaggaagtgcgTGTCCA
GAGCAACGCCCTCAAAGACGCAAATCTGTCACCCGTTGCGACACCGGCCC
CGCATCTCTCAAGGGACTGCACCATCAGTGCCAGGGAGGTTGAAGAAGCG
TCCCGCATTCTTTTCGCGCCAGAGGGCGCGACCTCTCACTTTCATCACCA
TCGGGCGGAGGCTGCATATCAAGACTCAGAGGCGAATAAATTACAGAAGC
GGGTCTCAGGTGCCGCCAAGACTAGTGAAAGAGCCCCTCAAGTAGAGGCA
GGGATCGatgaggcggtggaggacaagcaGCGCGTCAATCTTGCTAAAGG
TATGGCTCCGACTCAGTCGTTGCCGCCCATGTTGCGAACCCGGTCGCCAG
TTTCTCGAAGTTTGGCACCCTTGCCATCGACCTTGCTGGCACGCTTGCAT
CCGCAACCGGAAGTCCACGCCGAGATCTTGCGTTTTGGGGAGGCTCTTGC
TTCTAATCCAAGGATTCAAAACGCCATCGTGGAGGAGCTAGACATGcact
accctccttcccgtaaGGCTTTCGAGCGGGAAGGTACAGGTGAGAACGAC
GAAGGAGCAGCGGAAAGGTCTTTGGCGCAGATGGAGTCAGCAGTGCGGCG
GTTGCTCGGGCGGACTTCGGCCGAGGAtcgggcggaggcagcaacacagg
aaggagaggaagggaatgaagaGAGACGAGGATTTGGAAGCGCTGGCGGC
GGTTACAGTGGCCGGAGCAGTTTTTTGACGGATTCCTTTGAAGTGCTTGG
AGCTATGAGTGCCGAGTGGTCGTCAGCGAGCTCCAAGAACGGAggagcag
aggagaaggtggggaatGAACGCGAGGATATGGCGGAGAACCTTCCCTCT
AATTCCTTCGTAAGTGTGGGCCGCTACATGCGGCGAAAGGACAGCTTGGC
AGGGGAGGTCTCGGACGAGGTGCTGGACGAGCTGCTTCGCTCtgaagacg
acgacgacgtgATCGCCCAGAAGCTCTTCGCCGAGACGCCGGATGACCAA
GTGCGGCGCTTCCTTCGCAACCTCGACCTGGAGTGTGTCATCTGTCACGA
GTacatggtggaggcggcggcagtTGATTGTGGAGAAGGGCACACTTTCT
GCGGAGAATGCATCGAAAGATGGCTGGAACTCCCTGTGGCGGGCGGCTCT
CGATGCCCTACCTGCCAGAAACCTGTCCACTCAACCATTCCCATGCGACA
ATACGACGCCATGATCGAAAAGTATGTTCGCGCTTCAAACCTCTGGGACG
AACAATGCTCTTTCTACCGTCGTCGCACCCTGGCGCACATGCGACGTGAA
ATGGAGCGACaagacagagaggaggaggaaactgCGACGGCTGCGACTCA
GGGCCCTTTTGCTGGCATTGGAAACCTGTTTGGGTTGGGCACGCGCGCGA
ACGCCCGCCGCCAGCGTCGTCGCAGCCGACGGGCTACTGCTGCCGCCACG
CGTGCCGCCGCTGGCGCGTCAAGGACCacgggagacggcggggcggggga
ggcagcgCAGCCTTGGTGGAAGAGCGAATTGCTGAGCACGGCCTTATCGG
TGGCCACGATGCTAGTGCTCCTGGTTTTATTCAAACGCGGGTTCAAGACT
CGATAGACGTAGTAGGGTGGACCGTCGCGTTGAGAAAGCCGAGTTGTGGG
AAGAAGAGCACTCGAAGAGTGTCCTGGCCGTGGCGTCGACGTGGAGAAGC
GAAAGTATTAAACGGGAGGAGCGATACCCTCGTGTCTCGGGTGTTGTGTT
GCTGTACATAGGCTAGGAGGCGTGCGGACCAAATTATAgaggcccgggag
gagacgagcgaGCCCACAAGACTCTTGAGAATGGGAGGGCGTGATAATCG
AaggcctccatttccccgctCAATATtggcgagcaggaggggaaaatgaa
aaCGAACAGATGTTAAAGAAATGCAATACATGCCATAGGATTCACCCACA
AATAGGACGCACAAGCTTATTTTC

Coding sequence (CDS) from alignment at CM002462.1:626106..628679+

>rna4012 ID=rna4012|Name=rna4012|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at CM002462.1:626106..628679+ (Nannochloropsis gaditana)
ATGGCACGCCGTGGATTGTCGCATAACTTGCCAAACTACGTCAAGGGCGG
GTGCACCGTCGGGGCATGCACATATCAAAGCCAAGCGGCGCGTACCTTTc
acgacgacgatgatgacGACAGCGGGGGTGTTGGCCGTGACTCAACCGTG
TTGACAACAGACACCACAACGGgggagcgggcggaggaagtgcgTGTCCA
GAGCAACGCCCTCAAAGACGCAAATCTGTCACCCGTTGCGACACCGGCCC
CGCATCTCTCAAGGGACTGCACCATCAGTGCCAGGGAGGTTGAAGAAGCG
TCCCGCATTCTTTTCGCGCCAGAGGGCGCGACCTCTCACTTTCATCACCA
TCGGGCGGAGGCTGCATATCAAGACTCAGAGGCGAATAAATTACAGAAGC
GGGTCTCAGGTGCCGCCAAGACTAGTGAAAGAGCCCCTCAAGTAGAGGCA
GGGATCGatgaggcggtggaggacaagcaGCGCGTCAATCTTGCTAAAGG
TATGGCTCCGACTCAGTCGTTGCCGCCCATGTTGCGAACCCGGTCGCCAG
TTTCTCGAAGTTTGGCACCCTTGCCATCGACCTTGCTGGCACGCTTGCAT
CCGCAACCGGAAGTCCACGCCGAGATCTTGCGTTTTGGGGAGGCTCTTGC
TTCTAATCCAAGGATTCAAAACGCCATCGTGGAGGAGCTAGACATGcact
accctccttcccgtaaGGCTTTCGAGCGGGAAGGTACAGGTGAGAACGAC
GAAGGAGCAGCGGAAAGGTCTTTGGCGCAGATGGAGTCAGCAGTGCGGCG
GTTGCTCGGGCGGACTTCGGCCGAGGAtcgggcggaggcagcaacacagg
aaggagaggaagggaatgaagaGAGACGAGGATTTGGAAGCGCTGGCGGC
GGTTACAGTGGCCGGAGCAGTTTTTTGACGGATTCCTTTGAAGTGCTTGG
AGCTATGAGTGCCGAGTGGTCGTCAGCGAGCTCCAAGAACGGAggagcag
aggagaaggtggggaatGAACGCGAGGATATGGCGGAGAACCTTCCCTCT
AATTCCTTCGTAAGTGTGGGCCGCTACATGCGGCGAAAGGACAGCTTGGC
AGGGGAGGTCTCGGACGAGGTGCTGGACGAGCTGCTTCGCTCtgaagacg
acgacgacgtgATCGCCCAGAAGCTCTTCGCCGAGACGCCGGATGACCAA
GTGCGGCGCTTCCTTCGCAACCTCGACCTGGAGTGTGTCATCTGTCACGA
GTacatggtggaggcggcggcagtTGATTGTGGAGAAGGGCACACTTTCT
GCGGAGAATGCATCGAAAGATGGCTGGAACTCCCTGTGGCGGGCGGCTCT
CGATGCCCTACCTGCCAGAAACCTGTCCACTCAACCATTCCCATGCGACA
ATACGACGCCATGATCGAAAAGTATGTTCGCGCTTCAAACCTCTGGGACG
AACAATGCTCTTTCTACCGTCGTCGCACCCTGGCGCACATGCGACGTGAA
ATGGAGCGACaagacagagaggaggaggaaactgCGACGGCTGCGACTCA
GGGCCCTTTTGCTGGCATTGGAAACCTGTTTGGGTTGGGCACGCGCGCGA
ACGCCCGCCGCCAGCGTCGTCGCAGCCGACGGGCTACTGCTGCCGCCACG
CGTGCCGCCGCTGGCGCGTCAAGGACCacgggagacggcggggcggggga
ggcagcgCAGCCTTGGTGGAAGAGCGAATTGCTGAGCACGGCCTTATCGG
TGGCCACGATGCTAGTGCTCCTGGTTTTATTCAAACGCGGGTTCAAGACT
CGATAG

Synonyms

Publications